Strain Fitness in Rahnella sp. WP5 around EX31_RS23570

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS23565 and EX31_RS23570 overlap by 7 nucleotidesEX31_RS23570 and EX31_RS23575 overlap by 1 nucleotides EX31_RS23565: EX31_RS23565 - galactose-1-epimerase, at 478,019 to 479,065 _RS23565 EX31_RS23570: EX31_RS23570 - galactokinase, at 479,059 to 480,207 _RS23570 EX31_RS23575: EX31_RS23575 - galactose-1-phosphate uridylyltransferase, at 480,207 to 481,256 _RS23575 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 478.152 kb on + strand, within EX31_RS23565at 478.153 kb on - strand, within EX31_RS23565at 478.161 kb on + strand, within EX31_RS23565at 478.162 kb on - strand, within EX31_RS23565at 478.209 kb on + strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.210 kb on - strand, within EX31_RS23565at 478.234 kb on + strand, within EX31_RS23565at 478.235 kb on - strand, within EX31_RS23565at 478.235 kb on - strand, within EX31_RS23565at 478.320 kb on + strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.321 kb on - strand, within EX31_RS23565at 478.333 kb on - strand, within EX31_RS23565at 478.333 kb on - strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.533 kb on + strand, within EX31_RS23565at 478.534 kb on - strand, within EX31_RS23565at 478.567 kb on + strand, within EX31_RS23565at 478.620 kb on + strand, within EX31_RS23565at 478.623 kb on + strand, within EX31_RS23565at 478.624 kb on - strand, within EX31_RS23565at 478.715 kb on - strand, within EX31_RS23565at 478.715 kb on - strand, within EX31_RS23565at 478.826 kb on - strand, within EX31_RS23565at 478.837 kb on - strand, within EX31_RS23565at 478.860 kb on + strand, within EX31_RS23565at 478.878 kb on + strand, within EX31_RS23565at 478.878 kb on + strand, within EX31_RS23565at 478.878 kb on + strand, within EX31_RS23565at 478.878 kb on + strand, within EX31_RS23565at 478.879 kb on - strand, within EX31_RS23565at 478.879 kb on - strand, within EX31_RS23565at 478.879 kb on - strand, within EX31_RS23565at 478.879 kb on - strand, within EX31_RS23565at 479.061 kb on - strandat 479.061 kb on - strandat 479.061 kb on - strandat 479.061 kb on - strandat 479.065 kb on + strandat 479.065 kb on + strandat 479.066 kb on - strandat 479.066 kb on - strandat 479.066 kb on - strandat 479.066 kb on - strandat 479.096 kb on + strandat 479.096 kb on + strandat 479.096 kb on + strandat 479.097 kb on - strandat 479.130 kb on - strandat 479.130 kb on - strandat 479.165 kb on - strandat 479.268 kb on + strand, within EX31_RS23570at 479.385 kb on + strand, within EX31_RS23570at 479.541 kb on - strand, within EX31_RS23570at 479.541 kb on - strand, within EX31_RS23570at 479.679 kb on + strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.680 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.692 kb on - strand, within EX31_RS23570at 479.703 kb on + strand, within EX31_RS23570at 479.704 kb on - strand, within EX31_RS23570at 479.774 kb on + strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.775 kb on - strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.924 kb on + strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.925 kb on - strand, within EX31_RS23570at 479.958 kb on + strand, within EX31_RS23570at 479.959 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.031 kb on - strand, within EX31_RS23570at 480.060 kb on - strand, within EX31_RS23570at 480.095 kb on + strandat 480.096 kb on - strandat 480.102 kb on + strandat 480.103 kb on - strandat 480.144 kb on + strandat 480.145 kb on - strandat 480.583 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.691 kb on + strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.031 kb on + strand, within EX31_RS23575at 481.032 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.189 kb on - strandat 481.189 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
478,152 + EX31_RS23565 0.13 +1.5
478,153 - EX31_RS23565 0.13 +0.8
478,161 + EX31_RS23565 0.14 +1.5
478,162 - EX31_RS23565 0.14 +1.2
478,209 + EX31_RS23565 0.18 -0.8
478,210 - EX31_RS23565 0.18 +0.2
478,210 - EX31_RS23565 0.18 +0.5
478,210 - EX31_RS23565 0.18 +0.5
478,210 - EX31_RS23565 0.18 +1.4
478,234 + EX31_RS23565 0.21 -0.1
478,235 - EX31_RS23565 0.21 +0.4
478,235 - EX31_RS23565 0.21 +3.6
478,320 + EX31_RS23565 0.29 +0.8
478,321 - EX31_RS23565 0.29 -0.2
478,321 - EX31_RS23565 0.29 -0.1
478,321 - EX31_RS23565 0.29 +0.8
478,333 - EX31_RS23565 0.30 -0.0
478,333 - EX31_RS23565 0.30 +0.5
478,533 + EX31_RS23565 0.49 -1.2
478,533 + EX31_RS23565 0.49 +1.4
478,533 + EX31_RS23565 0.49 -0.2
478,534 - EX31_RS23565 0.49 +2.4
478,567 + EX31_RS23565 0.52 -0.6
478,620 + EX31_RS23565 0.57 -0.6
478,623 + EX31_RS23565 0.58 +0.8
478,624 - EX31_RS23565 0.58 +1.8
478,715 - EX31_RS23565 0.66 +0.4
478,715 - EX31_RS23565 0.66 +0.8
478,826 - EX31_RS23565 0.77 +1.1
478,837 - EX31_RS23565 0.78 +0.1
478,860 + EX31_RS23565 0.80 -0.1
478,878 + EX31_RS23565 0.82 -0.4
478,878 + EX31_RS23565 0.82 +0.0
478,878 + EX31_RS23565 0.82 -0.0
478,878 + EX31_RS23565 0.82 -1.7
478,879 - EX31_RS23565 0.82 +1.1
478,879 - EX31_RS23565 0.82 +1.0
478,879 - EX31_RS23565 0.82 +1.2
478,879 - EX31_RS23565 0.82 -0.8
479,061 - +1.1
479,061 - +1.9
479,061 - -0.3
479,061 - -0.1
479,065 + +0.4
479,065 + +0.8
479,066 - +0.2
479,066 - -1.0
479,066 - +0.5
479,066 - -0.1
479,096 + +0.6
479,096 + +0.8
479,096 + +2.0
479,097 - -0.0
479,130 - +0.8
479,130 - +1.1
479,165 - +0.8
479,268 + EX31_RS23570 0.18 +1.0
479,385 + EX31_RS23570 0.28 -0.2
479,541 - EX31_RS23570 0.42 -1.2
479,541 - EX31_RS23570 0.42 -2.2
479,679 + EX31_RS23570 0.54 +0.2
479,680 - EX31_RS23570 0.54 +0.4
479,680 - EX31_RS23570 0.54 +0.9
479,680 - EX31_RS23570 0.54 -0.2
479,680 - EX31_RS23570 0.54 +0.6
479,680 - EX31_RS23570 0.54 +0.8
479,692 - EX31_RS23570 0.55 +0.1
479,692 - EX31_RS23570 0.55 +0.2
479,692 - EX31_RS23570 0.55 +0.0
479,703 + EX31_RS23570 0.56 +1.2
479,704 - EX31_RS23570 0.56 -0.4
479,774 + EX31_RS23570 0.62 +2.4
479,775 - EX31_RS23570 0.62 +0.3
479,775 - EX31_RS23570 0.62 -0.9
479,775 - EX31_RS23570 0.62 -0.9
479,775 - EX31_RS23570 0.62 +0.1
479,775 - EX31_RS23570 0.62 +0.5
479,924 + EX31_RS23570 0.75 -0.8
479,924 + EX31_RS23570 0.75 +1.4
479,924 + EX31_RS23570 0.75 +1.7
479,924 + EX31_RS23570 0.75 +0.8
479,924 + EX31_RS23570 0.75 -0.4
479,924 + EX31_RS23570 0.75 -0.4
479,924 + EX31_RS23570 0.75 +0.8
479,924 + EX31_RS23570 0.75 +1.6
479,925 - EX31_RS23570 0.75 +0.6
479,925 - EX31_RS23570 0.75 +0.3
479,925 - EX31_RS23570 0.75 -0.2
479,925 - EX31_RS23570 0.75 -1.0
479,925 - EX31_RS23570 0.75 +2.0
479,925 - EX31_RS23570 0.75 -0.9
479,958 + EX31_RS23570 0.78 +1.8
479,959 - EX31_RS23570 0.78 +0.0
480,031 - EX31_RS23570 0.85 -0.0
480,031 - EX31_RS23570 0.85 +1.2
480,031 - EX31_RS23570 0.85 -0.2
480,060 - EX31_RS23570 0.87 +1.2
480,095 + +0.4
480,096 - -0.2
480,102 + +0.1
480,103 - -0.8
480,144 + -0.2
480,145 - -0.6
480,583 + EX31_RS23575 0.36 -0.4
480,655 + EX31_RS23575 0.43 +2.0
480,655 + EX31_RS23575 0.43 +0.8
480,691 + EX31_RS23575 0.46 -1.4
480,692 - EX31_RS23575 0.46 +1.3
480,692 - EX31_RS23575 0.46 +0.0
481,022 - EX31_RS23575 0.78 -2.8
481,022 - EX31_RS23575 0.78 -1.4
481,031 + EX31_RS23575 0.78 +0.8
481,032 - EX31_RS23575 0.79 +0.0
481,052 - EX31_RS23575 0.80 +1.7
481,052 - EX31_RS23575 0.80 +0.0
481,189 - +0.8
481,189 - +0.2

Or see this region's nucleotide sequence