Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23555 and EX31_RS23560 are separated by 207 nucleotides EX31_RS23560 and EX31_RS23565 are separated by 151 nucleotides EX31_RS23565 and EX31_RS23570 overlap by 7 nucleotides
EX31_RS23555: EX31_RS23555 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 476,575 to 477,327
_RS23555
EX31_RS23560: EX31_RS23560 - phosphate starvation-inducible protein, at 477,535 to 477,867
_RS23560
EX31_RS23565: EX31_RS23565 - galactose-1-epimerase, at 478,019 to 479,065
_RS23565
EX31_RS23570: EX31_RS23570 - galactokinase, at 479,059 to 480,207
_RS23570
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 477.363 kb on - strand at 477.444 kb on - strand at 477.446 kb on + strand at 477.452 kb on + strand at 477.475 kb on - strand at 477.475 kb on - strand at 477.516 kb on + strand at 477.517 kb on - strand at 477.517 kb on - strand at 477.558 kb on + strand at 477.559 kb on - strand at 477.615 kb on + strand, within EX31_RS23560 at 477.652 kb on - strand, within EX31_RS23560 at 477.726 kb on + strand, within EX31_RS23560 at 477.727 kb on - strand, within EX31_RS23560 at 477.741 kb on + strand, within EX31_RS23560 at 477.741 kb on + strand, within EX31_RS23560 at 477.742 kb on - strand, within EX31_RS23560 at 477.742 kb on - strand, within EX31_RS23560 at 477.847 kb on + strand at 477.860 kb on - strand at 477.867 kb on + strand at 477.868 kb on - strand at 477.883 kb on + strand at 477.883 kb on + strand at 477.895 kb on + strand at 477.896 kb on - strand at 477.917 kb on + strand at 477.918 kb on - strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.925 kb on + strand at 477.926 kb on - strand at 477.926 kb on - strand at 478.020 kb on + strand at 478.020 kb on + strand at 478.020 kb on + strand at 478.021 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.039 kb on - strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.054 kb on + strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.055 kb on - strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.056 kb on + strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.057 kb on - strand at 478.152 kb on + strand, within EX31_RS23565 at 478.153 kb on - strand, within EX31_RS23565 at 478.161 kb on + strand, within EX31_RS23565 at 478.162 kb on - strand, within EX31_RS23565 at 478.209 kb on + strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.210 kb on - strand, within EX31_RS23565 at 478.234 kb on + strand, within EX31_RS23565 at 478.235 kb on - strand, within EX31_RS23565 at 478.235 kb on - strand, within EX31_RS23565 at 478.320 kb on + strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565 at 478.321 kb on - strand, within EX31_RS23565 at 478.333 kb on - strand, within EX31_RS23565 at 478.333 kb on - strand, within EX31_RS23565 at 478.533 kb on + strand, within EX31_RS23565 at 478.533 kb on + strand, within EX31_RS23565 at 478.533 kb on + strand, within EX31_RS23565 at 478.534 kb on - strand, within EX31_RS23565 at 478.567 kb on + strand, within EX31_RS23565 at 478.620 kb on + strand, within EX31_RS23565 at 478.623 kb on + strand, within EX31_RS23565 at 478.624 kb on - strand, within EX31_RS23565 at 478.715 kb on - strand, within EX31_RS23565 at 478.715 kb on - strand, within EX31_RS23565 at 478.826 kb on - strand, within EX31_RS23565 at 478.837 kb on - strand, within EX31_RS23565 at 478.860 kb on + strand, within EX31_RS23565 at 478.878 kb on + strand, within EX31_RS23565 at 478.878 kb on + strand, within EX31_RS23565 at 478.878 kb on + strand, within EX31_RS23565 at 478.878 kb on + strand, within EX31_RS23565 at 478.879 kb on - strand, within EX31_RS23565 at 478.879 kb on - strand, within EX31_RS23565 at 478.879 kb on - strand, within EX31_RS23565 at 478.879 kb on - strand, within EX31_RS23565 at 479.061 kb on - strand at 479.061 kb on - strand at 479.061 kb on - strand at 479.061 kb on - strand at 479.065 kb on + strand at 479.065 kb on + strand at 479.066 kb on - strand at 479.066 kb on - strand at 479.066 kb on - strand at 479.066 kb on - strand at 479.096 kb on + strand at 479.096 kb on + strand at 479.096 kb on + strand at 479.097 kb on - strand at 479.130 kb on - strand at 479.130 kb on - strand at 479.165 kb on - strand at 479.268 kb on + strand, within EX31_RS23570 at 479.385 kb on + strand, within EX31_RS23570 at 479.541 kb on - strand, within EX31_RS23570 at 479.541 kb on - strand, within EX31_RS23570 at 479.679 kb on + strand, within EX31_RS23570 at 479.680 kb on - strand, within EX31_RS23570 at 479.680 kb on - strand, within EX31_RS23570 at 479.680 kb on - strand, within EX31_RS23570 at 479.680 kb on - strand, within EX31_RS23570 at 479.680 kb on - strand, within EX31_RS23570 at 479.692 kb on - strand, within EX31_RS23570 at 479.692 kb on - strand, within EX31_RS23570 at 479.692 kb on - strand, within EX31_RS23570 at 479.703 kb on + strand, within EX31_RS23570 at 479.704 kb on - strand, within EX31_RS23570 at 479.774 kb on + strand, within EX31_RS23570 at 479.775 kb on - strand, within EX31_RS23570 at 479.775 kb on - strand, within EX31_RS23570 at 479.775 kb on - strand, within EX31_RS23570 at 479.775 kb on - strand, within EX31_RS23570 at 479.775 kb on - strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.924 kb on + strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.925 kb on - strand, within EX31_RS23570 at 479.958 kb on + strand, within EX31_RS23570 at 479.959 kb on - strand, within EX31_RS23570 at 480.031 kb on - strand, within EX31_RS23570 at 480.031 kb on - strand, within EX31_RS23570 at 480.031 kb on - strand, within EX31_RS23570 at 480.060 kb on - strand, within EX31_RS23570
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 477,363 - +0.3 477,444 - +0.8 477,446 + -1.1 477,452 + -0.2 477,475 - -1.0 477,475 - +0.1 477,516 + +1.0 477,517 - -0.3 477,517 - +0.2 477,558 + +2.4 477,559 - -1.1 477,615 + EX31_RS23560 0.24 +0.2 477,652 - EX31_RS23560 0.35 +0.2 477,726 + EX31_RS23560 0.57 -0.0 477,727 - EX31_RS23560 0.58 +1.1 477,741 + EX31_RS23560 0.62 -2.0 477,741 + EX31_RS23560 0.62 +0.2 477,742 - EX31_RS23560 0.62 -0.1 477,742 - EX31_RS23560 0.62 -1.2 477,847 + +0.5 477,860 - -1.2 477,867 + -0.5 477,868 - +0.6 477,883 + +1.8 477,883 + +0.2 477,895 + -2.1 477,896 - -0.5 477,917 + -1.0 477,918 - -0.0 477,925 + -0.2 477,925 + +0.6 477,925 + -0.1 477,925 + +0.4 477,926 - +0.6 477,926 - -0.0 478,020 + -0.8 478,020 + -0.8 478,020 + +1.5 478,021 - +0.6 478,039 - +0.3 478,039 - -0.6 478,039 - -0.4 478,039 - -0.5 478,054 + +0.8 478,054 + +0.0 478,054 + +1.5 478,054 + +2.0 478,054 + +1.9 478,054 + -1.7 478,054 + +1.4 478,054 + +1.4 478,054 + +0.5 478,054 + -0.4 478,054 + -0.2 478,054 + +1.8 478,054 + +0.2 478,054 + +0.8 478,055 - -3.2 478,055 - +1.4 478,055 - +0.0 478,055 - +0.7 478,055 - +0.8 478,055 - +1.3 478,055 - -0.9 478,055 - +0.0 478,055 - +0.1 478,056 + -1.0 478,056 + +1.8 478,056 + +2.1 478,056 + +0.3 478,056 + -0.1 478,057 - -0.1 478,057 - -0.8 478,057 - +1.0 478,057 - -0.0 478,152 + EX31_RS23565 0.13 +1.5 478,153 - EX31_RS23565 0.13 +0.8 478,161 + EX31_RS23565 0.14 +1.5 478,162 - EX31_RS23565 0.14 +1.2 478,209 + EX31_RS23565 0.18 -0.8 478,210 - EX31_RS23565 0.18 +0.2 478,210 - EX31_RS23565 0.18 +0.5 478,210 - EX31_RS23565 0.18 +0.5 478,210 - EX31_RS23565 0.18 +1.4 478,234 + EX31_RS23565 0.21 -0.1 478,235 - EX31_RS23565 0.21 +0.4 478,235 - EX31_RS23565 0.21 +3.6 478,320 + EX31_RS23565 0.29 +0.8 478,321 - EX31_RS23565 0.29 -0.2 478,321 - EX31_RS23565 0.29 -0.1 478,321 - EX31_RS23565 0.29 +0.8 478,333 - EX31_RS23565 0.30 -0.0 478,333 - EX31_RS23565 0.30 +0.5 478,533 + EX31_RS23565 0.49 -1.2 478,533 + EX31_RS23565 0.49 +1.4 478,533 + EX31_RS23565 0.49 -0.2 478,534 - EX31_RS23565 0.49 +2.4 478,567 + EX31_RS23565 0.52 -0.6 478,620 + EX31_RS23565 0.57 -0.6 478,623 + EX31_RS23565 0.58 +0.8 478,624 - EX31_RS23565 0.58 +1.8 478,715 - EX31_RS23565 0.66 +0.4 478,715 - EX31_RS23565 0.66 +0.8 478,826 - EX31_RS23565 0.77 +1.1 478,837 - EX31_RS23565 0.78 +0.1 478,860 + EX31_RS23565 0.80 -0.1 478,878 + EX31_RS23565 0.82 -0.4 478,878 + EX31_RS23565 0.82 +0.0 478,878 + EX31_RS23565 0.82 -0.0 478,878 + EX31_RS23565 0.82 -1.7 478,879 - EX31_RS23565 0.82 +1.1 478,879 - EX31_RS23565 0.82 +1.0 478,879 - EX31_RS23565 0.82 +1.2 478,879 - EX31_RS23565 0.82 -0.8 479,061 - +1.1 479,061 - +1.9 479,061 - -0.3 479,061 - -0.1 479,065 + +0.4 479,065 + +0.8 479,066 - +0.2 479,066 - -1.0 479,066 - +0.5 479,066 - -0.1 479,096 + +0.6 479,096 + +0.8 479,096 + +2.0 479,097 - -0.0 479,130 - +0.8 479,130 - +1.1 479,165 - +0.8 479,268 + EX31_RS23570 0.18 +1.0 479,385 + EX31_RS23570 0.28 -0.2 479,541 - EX31_RS23570 0.42 -1.2 479,541 - EX31_RS23570 0.42 -2.2 479,679 + EX31_RS23570 0.54 +0.2 479,680 - EX31_RS23570 0.54 +0.4 479,680 - EX31_RS23570 0.54 +0.9 479,680 - EX31_RS23570 0.54 -0.2 479,680 - EX31_RS23570 0.54 +0.6 479,680 - EX31_RS23570 0.54 +0.8 479,692 - EX31_RS23570 0.55 +0.1 479,692 - EX31_RS23570 0.55 +0.2 479,692 - EX31_RS23570 0.55 +0.0 479,703 + EX31_RS23570 0.56 +1.2 479,704 - EX31_RS23570 0.56 -0.4 479,774 + EX31_RS23570 0.62 +2.4 479,775 - EX31_RS23570 0.62 +0.3 479,775 - EX31_RS23570 0.62 -0.9 479,775 - EX31_RS23570 0.62 -0.9 479,775 - EX31_RS23570 0.62 +0.1 479,775 - EX31_RS23570 0.62 +0.5 479,924 + EX31_RS23570 0.75 -0.8 479,924 + EX31_RS23570 0.75 +1.4 479,924 + EX31_RS23570 0.75 +1.7 479,924 + EX31_RS23570 0.75 +0.8 479,924 + EX31_RS23570 0.75 -0.4 479,924 + EX31_RS23570 0.75 -0.4 479,924 + EX31_RS23570 0.75 +0.8 479,924 + EX31_RS23570 0.75 +1.6 479,925 - EX31_RS23570 0.75 +0.6 479,925 - EX31_RS23570 0.75 +0.3 479,925 - EX31_RS23570 0.75 -0.2 479,925 - EX31_RS23570 0.75 -1.0 479,925 - EX31_RS23570 0.75 +2.0 479,925 - EX31_RS23570 0.75 -0.9 479,958 + EX31_RS23570 0.78 +1.8 479,959 - EX31_RS23570 0.78 +0.0 480,031 - EX31_RS23570 0.85 -0.0 480,031 - EX31_RS23570 0.85 +1.2 480,031 - EX31_RS23570 0.85 -0.2 480,060 - EX31_RS23570 0.87 +1.2
Or see this region's nucleotide sequence