Strain Fitness in Rahnella sp. WP5 around EX31_RS23405

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23395 and EX31_RS23400 are separated by 27 nucleotidesEX31_RS23400 and EX31_RS23405 overlap by 1 nucleotidesEX31_RS23405 and EX31_RS23410 are separated by 51 nucleotides EX31_RS23395: EX31_RS23395 - 5-oxoprolinase subunit PxpA, at 443,178 to 443,915 _RS23395 EX31_RS23400: EX31_RS23400 - pyroglutamyl-peptidase I, at 443,943 to 444,593 _RS23400 EX31_RS23405: EX31_RS23405 - endonuclease VIII, at 444,593 to 445,387 _RS23405 EX31_RS23410: EX31_RS23410 - autotransporter outer membrane beta-barrel domain-containing protein, at 445,439 to 448,342 _RS23410 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 443.762 kb on - strand, within EX31_RS23395at 443.762 kb on - strand, within EX31_RS23395at 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.936 kb on + strandat 443.937 kb on - strandat 443.937 kb on - strandat 443.937 kb on - strandat 443.937 kb on - strandat 444.010 kb on + strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.011 kb on - strand, within EX31_RS23400at 444.013 kb on + strand, within EX31_RS23400at 444.013 kb on + strand, within EX31_RS23400at 444.014 kb on - strand, within EX31_RS23400at 444.316 kb on + strand, within EX31_RS23400at 444.316 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.363 kb on + strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.364 kb on - strand, within EX31_RS23400at 444.371 kb on + strand, within EX31_RS23400at 444.372 kb on - strand, within EX31_RS23400at 444.384 kb on + strand, within EX31_RS23400at 444.385 kb on - strand, within EX31_RS23400at 444.419 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.494 kb on + strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.495 kb on - strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.502 kb on + strand, within EX31_RS23400at 444.503 kb on - strand, within EX31_RS23400at 444.503 kb on - strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.506 kb on + strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.507 kb on - strand, within EX31_RS23400at 444.637 kb on + strandat 444.788 kb on + strand, within EX31_RS23405at 444.788 kb on + strand, within EX31_RS23405at 444.789 kb on - strand, within EX31_RS23405at 444.806 kb on + strand, within EX31_RS23405at 444.906 kb on - strand, within EX31_RS23405at 444.929 kb on + strand, within EX31_RS23405at 444.929 kb on + strand, within EX31_RS23405at 444.929 kb on + strand, within EX31_RS23405at 444.929 kb on + strand, within EX31_RS23405at 444.930 kb on - strand, within EX31_RS23405at 444.970 kb on + strand, within EX31_RS23405at 444.971 kb on - strand, within EX31_RS23405at 445.027 kb on - strand, within EX31_RS23405at 445.103 kb on + strand, within EX31_RS23405at 445.103 kb on + strand, within EX31_RS23405at 445.103 kb on + strand, within EX31_RS23405at 445.103 kb on + strand, within EX31_RS23405at 445.104 kb on - strand, within EX31_RS23405at 445.104 kb on - strand, within EX31_RS23405at 445.223 kb on + strand, within EX31_RS23405at 445.237 kb on + strand, within EX31_RS23405at 445.237 kb on + strand, within EX31_RS23405at 445.279 kb on + strand, within EX31_RS23405at 445.284 kb on + strand, within EX31_RS23405at 445.284 kb on + strand, within EX31_RS23405at 445.285 kb on - strand, within EX31_RS23405at 445.392 kb on + strandat 445.473 kb on + strandat 445.473 kb on + strandat 445.474 kb on - strandat 445.474 kb on - strandat 445.520 kb on - strandat 445.522 kb on - strandat 445.522 kb on - strandat 445.522 kb on - strandat 445.598 kb on - strandat 445.619 kb on + strandat 445.620 kb on - strandat 445.620 kb on - strandat 445.665 kb on + strandat 445.665 kb on + strandat 445.789 kb on - strand, within EX31_RS23410at 445.789 kb on - strand, within EX31_RS23410at 445.789 kb on - strand, within EX31_RS23410at 445.789 kb on - strand, within EX31_RS23410at 445.834 kb on + strand, within EX31_RS23410at 445.905 kb on + strand, within EX31_RS23410at 445.906 kb on - strand, within EX31_RS23410at 445.906 kb on - strand, within EX31_RS23410at 445.947 kb on + strand, within EX31_RS23410at 445.948 kb on - strand, within EX31_RS23410at 445.967 kb on + strand, within EX31_RS23410at 445.967 kb on + strand, within EX31_RS23410at 445.968 kb on - strand, within EX31_RS23410at 445.968 kb on - strand, within EX31_RS23410at 445.968 kb on - strand, within EX31_RS23410at 445.974 kb on + strand, within EX31_RS23410at 445.974 kb on + strand, within EX31_RS23410at 445.975 kb on - strand, within EX31_RS23410at 445.977 kb on + strand, within EX31_RS23410at 445.991 kb on - strand, within EX31_RS23410at 445.991 kb on - strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.992 kb on + strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 445.993 kb on - strand, within EX31_RS23410at 446.006 kb on + strand, within EX31_RS23410at 446.007 kb on - strand, within EX31_RS23410at 446.007 kb on - strand, within EX31_RS23410at 446.022 kb on - strand, within EX31_RS23410at 446.022 kb on - strand, within EX31_RS23410at 446.028 kb on + strand, within EX31_RS23410at 446.028 kb on + strand, within EX31_RS23410at 446.028 kb on + strand, within EX31_RS23410at 446.028 kb on + strand, within EX31_RS23410at 446.029 kb on - strand, within EX31_RS23410at 446.029 kb on - strand, within EX31_RS23410at 446.029 kb on - strand, within EX31_RS23410at 446.069 kb on - strand, within EX31_RS23410at 446.150 kb on + strand, within EX31_RS23410at 446.160 kb on + strand, within EX31_RS23410at 446.160 kb on + strand, within EX31_RS23410at 446.178 kb on + strand, within EX31_RS23410at 446.178 kb on + strand, within EX31_RS23410at 446.178 kb on + strand, within EX31_RS23410at 446.178 kb on + strand, within EX31_RS23410at 446.178 kb on + strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.179 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.243 kb on - strand, within EX31_RS23410at 446.247 kb on - strand, within EX31_RS23410at 446.247 kb on - strand, within EX31_RS23410at 446.263 kb on + strand, within EX31_RS23410at 446.274 kb on + strand, within EX31_RS23410at 446.274 kb on + strand, within EX31_RS23410at 446.274 kb on + strand, within EX31_RS23410at 446.274 kb on + strand, within EX31_RS23410at 446.275 kb on - strand, within EX31_RS23410at 446.275 kb on - strand, within EX31_RS23410at 446.275 kb on - strand, within EX31_RS23410at 446.299 kb on - strand, within EX31_RS23410at 446.305 kb on + strand, within EX31_RS23410at 446.306 kb on - strand, within EX31_RS23410at 446.326 kb on + strand, within EX31_RS23410at 446.328 kb on + strand, within EX31_RS23410at 446.329 kb on - strand, within EX31_RS23410at 446.329 kb on - strand, within EX31_RS23410

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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443,762 - EX31_RS23395 0.79 -1.5
443,762 - EX31_RS23395 0.79 -0.2
443,936 + -1.2
443,936 + +0.7
443,936 + +0.8
443,936 + +0.0
443,936 + +0.1
443,937 - +0.8
443,937 - +0.6
443,937 - +0.4
443,937 - -0.6
444,010 + EX31_RS23400 0.10 -1.3
444,011 - EX31_RS23400 0.10 +0.4
444,011 - EX31_RS23400 0.10 -2.4
444,011 - EX31_RS23400 0.10 +0.5
444,013 + EX31_RS23400 0.11 -0.4
444,013 + EX31_RS23400 0.11 +0.8
444,014 - EX31_RS23400 0.11 +1.6
444,316 + EX31_RS23400 0.57 -0.9
444,316 + EX31_RS23400 0.57 +0.5
444,363 + EX31_RS23400 0.65 +0.4
444,363 + EX31_RS23400 0.65 -0.1
444,363 + EX31_RS23400 0.65 +0.9
444,363 + EX31_RS23400 0.65 +0.9
444,363 + EX31_RS23400 0.65 +0.5
444,364 - EX31_RS23400 0.65 -0.2
444,364 - EX31_RS23400 0.65 -1.4
444,364 - EX31_RS23400 0.65 -1.9
444,364 - EX31_RS23400 0.65 -0.2
444,364 - EX31_RS23400 0.65 -0.5
444,371 + EX31_RS23400 0.66 +1.8
444,372 - EX31_RS23400 0.66 +0.8
444,384 + EX31_RS23400 0.68 +1.4
444,385 - EX31_RS23400 0.68 -1.2
444,419 + EX31_RS23400 0.73 +0.1
444,494 + EX31_RS23400 0.85 +1.4
444,494 + EX31_RS23400 0.85 -0.8
444,494 + EX31_RS23400 0.85 +1.8
444,494 + EX31_RS23400 0.85 -0.7
444,494 + EX31_RS23400 0.85 +0.0
444,494 + EX31_RS23400 0.85 +0.8
444,494 + EX31_RS23400 0.85 -0.2
444,494 + EX31_RS23400 0.85 +1.5
444,494 + EX31_RS23400 0.85 -1.2
444,494 + EX31_RS23400 0.85 +0.8
444,494 + EX31_RS23400 0.85 +0.5
444,494 + EX31_RS23400 0.85 -2.0
444,495 - EX31_RS23400 0.85 -0.1
444,495 - EX31_RS23400 0.85 +0.5
444,495 - EX31_RS23400 0.85 -1.4
444,495 - EX31_RS23400 0.85 +0.8
444,495 - EX31_RS23400 0.85 -1.1
444,495 - EX31_RS23400 0.85 -0.0
444,495 - EX31_RS23400 0.85 +0.1
444,495 - EX31_RS23400 0.85 +3.1
444,502 + EX31_RS23400 0.86 +0.8
444,502 + EX31_RS23400 0.86 +0.1
444,502 + EX31_RS23400 0.86 -0.7
444,502 + EX31_RS23400 0.86 -0.1
444,502 + EX31_RS23400 0.86 -0.6
444,502 + EX31_RS23400 0.86 -0.1
444,502 + EX31_RS23400 0.86 -1.8
444,502 + EX31_RS23400 0.86 -2.1
444,502 + EX31_RS23400 0.86 -1.7
444,503 - EX31_RS23400 0.86 +0.1
444,503 - EX31_RS23400 0.86 -0.3
444,506 + EX31_RS23400 0.86 -0.5
444,506 + EX31_RS23400 0.86 +0.5
444,506 + EX31_RS23400 0.86 +0.0
444,506 + EX31_RS23400 0.86 +1.4
444,506 + EX31_RS23400 0.86 -0.9
444,506 + EX31_RS23400 0.86 -0.3
444,506 + EX31_RS23400 0.86 -0.2
444,506 + EX31_RS23400 0.86 +1.4
444,506 + EX31_RS23400 0.86 +1.2
444,506 + EX31_RS23400 0.86 -1.3
444,506 + EX31_RS23400 0.86 -0.8
444,507 - EX31_RS23400 0.87 -0.2
444,507 - EX31_RS23400 0.87 -0.5
444,507 - EX31_RS23400 0.87 +0.8
444,507 - EX31_RS23400 0.87 -0.3
444,507 - EX31_RS23400 0.87 +0.8
444,507 - EX31_RS23400 0.87 -0.2
444,507 - EX31_RS23400 0.87 -0.2
444,507 - EX31_RS23400 0.87 -1.8
444,507 - EX31_RS23400 0.87 -0.1
444,507 - EX31_RS23400 0.87 -2.1
444,637 + +0.1
444,788 + EX31_RS23405 0.25 -0.1
444,788 + EX31_RS23405 0.25 -2.4
444,789 - EX31_RS23405 0.25 -0.2
444,806 + EX31_RS23405 0.27 +1.1
444,906 - EX31_RS23405 0.39 +1.1
444,929 + EX31_RS23405 0.42 -0.8
444,929 + EX31_RS23405 0.42 -1.2
444,929 + EX31_RS23405 0.42 -2.4
444,929 + EX31_RS23405 0.42 +0.4
444,930 - EX31_RS23405 0.42 +0.2
444,970 + EX31_RS23405 0.47 -0.1
444,971 - EX31_RS23405 0.48 -0.4
445,027 - EX31_RS23405 0.55 +0.0
445,103 + EX31_RS23405 0.64 -0.6
445,103 + EX31_RS23405 0.64 -0.2
445,103 + EX31_RS23405 0.64 +0.2
445,103 + EX31_RS23405 0.64 +1.0
445,104 - EX31_RS23405 0.64 -1.8
445,104 - EX31_RS23405 0.64 +1.6
445,223 + EX31_RS23405 0.79 -0.2
445,237 + EX31_RS23405 0.81 -1.8
445,237 + EX31_RS23405 0.81 -1.5
445,279 + EX31_RS23405 0.86 -0.4
445,284 + EX31_RS23405 0.87 -0.2
445,284 + EX31_RS23405 0.87 -0.4
445,285 - EX31_RS23405 0.87 +0.8
445,392 + -0.7
445,473 + +2.4
445,473 + +0.2
445,474 - +0.2
445,474 - -0.5
445,520 - +0.7
445,522 - -0.5
445,522 - +0.6
445,522 - +1.2
445,598 - +0.7
445,619 + +0.6
445,620 - +0.6
445,620 - -0.3
445,665 + -1.7
445,665 + -0.8
445,789 - EX31_RS23410 0.12 -0.5
445,789 - EX31_RS23410 0.12 +1.8
445,789 - EX31_RS23410 0.12 +0.9
445,789 - EX31_RS23410 0.12 +0.2
445,834 + EX31_RS23410 0.14 -1.2
445,905 + EX31_RS23410 0.16 -1.2
445,906 - EX31_RS23410 0.16 +0.8
445,906 - EX31_RS23410 0.16 -1.5
445,947 + EX31_RS23410 0.17 +0.2
445,948 - EX31_RS23410 0.18 -1.1
445,967 + EX31_RS23410 0.18 -0.7
445,967 + EX31_RS23410 0.18 +0.2
445,968 - EX31_RS23410 0.18 -1.5
445,968 - EX31_RS23410 0.18 -0.2
445,968 - EX31_RS23410 0.18 -0.4
445,974 + EX31_RS23410 0.18 +1.6
445,974 + EX31_RS23410 0.18 -0.8
445,975 - EX31_RS23410 0.18 +0.8
445,977 + EX31_RS23410 0.19 +0.8
445,991 - EX31_RS23410 0.19 -2.0
445,991 - EX31_RS23410 0.19 +0.2
445,992 + EX31_RS23410 0.19 -1.5
445,992 + EX31_RS23410 0.19 +0.4
445,992 + EX31_RS23410 0.19 +1.0
445,992 + EX31_RS23410 0.19 -0.2
445,992 + EX31_RS23410 0.19 +1.3
445,992 + EX31_RS23410 0.19 -0.0
445,992 + EX31_RS23410 0.19 +1.7
445,992 + EX31_RS23410 0.19 +0.6
445,992 + EX31_RS23410 0.19 -1.4
445,993 - EX31_RS23410 0.19 -0.6
445,993 - EX31_RS23410 0.19 -0.2
445,993 - EX31_RS23410 0.19 -1.5
445,993 - EX31_RS23410 0.19 +2.0
445,993 - EX31_RS23410 0.19 -0.2
445,993 - EX31_RS23410 0.19 -2.0
445,993 - EX31_RS23410 0.19 +2.0
445,993 - EX31_RS23410 0.19 +0.9
445,993 - EX31_RS23410 0.19 -0.5
445,993 - EX31_RS23410 0.19 +0.6
445,993 - EX31_RS23410 0.19 -1.2
445,993 - EX31_RS23410 0.19 +0.6
445,993 - EX31_RS23410 0.19 +0.3
446,006 + EX31_RS23410 0.20 +1.1
446,007 - EX31_RS23410 0.20 -2.9
446,007 - EX31_RS23410 0.20 -1.0
446,022 - EX31_RS23410 0.20 -0.1
446,022 - EX31_RS23410 0.20 -0.8
446,028 + EX31_RS23410 0.20 +0.8
446,028 + EX31_RS23410 0.20 +1.0
446,028 + EX31_RS23410 0.20 +2.8
446,028 + EX31_RS23410 0.20 +0.4
446,029 - EX31_RS23410 0.20 +0.1
446,029 - EX31_RS23410 0.20 -0.8
446,029 - EX31_RS23410 0.20 +1.3
446,069 - EX31_RS23410 0.22 +0.0
446,150 + EX31_RS23410 0.24 -0.8
446,160 + EX31_RS23410 0.25 +1.2
446,160 + EX31_RS23410 0.25 -0.8
446,178 + EX31_RS23410 0.25 +1.8
446,178 + EX31_RS23410 0.25 -0.1
446,178 + EX31_RS23410 0.25 +0.8
446,178 + EX31_RS23410 0.25 -0.2
446,178 + EX31_RS23410 0.25 +0.8
446,179 - EX31_RS23410 0.25 -1.0
446,179 - EX31_RS23410 0.25 +1.1
446,179 - EX31_RS23410 0.25 +2.4
446,179 - EX31_RS23410 0.25 +0.6
446,179 - EX31_RS23410 0.25 +0.6
446,179 - EX31_RS23410 0.25 +0.6
446,243 - EX31_RS23410 0.28 -0.5
446,243 - EX31_RS23410 0.28 -0.2
446,243 - EX31_RS23410 0.28 -1.1
446,243 - EX31_RS23410 0.28 +1.5
446,243 - EX31_RS23410 0.28 +0.1
446,243 - EX31_RS23410 0.28 -0.4
446,247 - EX31_RS23410 0.28 +1.3
446,247 - EX31_RS23410 0.28 +1.5
446,263 + EX31_RS23410 0.28 +1.8
446,274 + EX31_RS23410 0.29 +2.0
446,274 + EX31_RS23410 0.29 +0.2
446,274 + EX31_RS23410 0.29 +1.9
446,274 + EX31_RS23410 0.29 +1.1
446,275 - EX31_RS23410 0.29 -0.7
446,275 - EX31_RS23410 0.29 -1.2
446,275 - EX31_RS23410 0.29 -0.2
446,299 - EX31_RS23410 0.30 -0.3
446,305 + EX31_RS23410 0.30 +0.5
446,306 - EX31_RS23410 0.30 +1.0
446,326 + EX31_RS23410 0.31 -0.5
446,328 + EX31_RS23410 0.31 +0.8
446,329 - EX31_RS23410 0.31 +0.2
446,329 - EX31_RS23410 0.31 +0.6

Or see this region's nucleotide sequence