Strain Fitness in Rahnella sp. WP5 around EX31_RS23315

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23310 and EX31_RS23315 are separated by 241 nucleotidesEX31_RS23315 and EX31_RS23320 are separated by 24 nucleotides EX31_RS23310: EX31_RS23310 - esterase, at 422,916 to 423,698 _RS23310 EX31_RS23315: EX31_RS23315 - replication initiation negative regulator SeqA, at 423,940 to 424,494 _RS23315 EX31_RS23320: EX31_RS23320 - alpha-D-glucose phosphate-specific phosphoglucomutase, at 424,519 to 426,162 _RS23320 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 422.952 kb on + strandat 422.953 kb on - strandat 422.953 kb on - strandat 423.061 kb on + strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.131 kb on + strand, within EX31_RS23310at 423.131 kb on + strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.227 kb on + strand, within EX31_RS23310at 423.227 kb on + strand, within EX31_RS23310at 423.228 kb on - strand, within EX31_RS23310at 423.228 kb on - strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.257 kb on + strand, within EX31_RS23310at 423.291 kb on - strand, within EX31_RS23310at 423.493 kb on + strand, within EX31_RS23310at 423.530 kb on + strand, within EX31_RS23310at 423.554 kb on + strand, within EX31_RS23310at 423.555 kb on - strand, within EX31_RS23310at 423.594 kb on - strand, within EX31_RS23310at 423.678 kb on + strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.679 kb on - strandat 423.699 kb on - strandat 423.699 kb on - strandat 423.704 kb on + strandat 423.717 kb on + strandat 423.717 kb on + strandat 423.717 kb on + strandat 423.717 kb on + strandat 423.722 kb on + strandat 423.788 kb on + strandat 423.894 kb on - strandat 423.913 kb on + strandat 423.913 kb on + strandat 423.913 kb on + strandat 423.913 kb on + strandat 423.913 kb on + strandat 423.913 kb on + strandat 423.948 kb on + strandat 423.976 kb on + strandat 423.976 kb on + strandat 424.032 kb on + strand, within EX31_RS23315at 424.032 kb on + strand, within EX31_RS23315at 424.033 kb on - strand, within EX31_RS23315at 424.044 kb on + strand, within EX31_RS23315at 424.070 kb on + strand, within EX31_RS23315at 424.221 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.243 kb on + strand, within EX31_RS23315at 424.244 kb on - strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.306 kb on + strand, within EX31_RS23315at 424.350 kb on + strand, within EX31_RS23315at 424.350 kb on + strand, within EX31_RS23315at 424.359 kb on + strand, within EX31_RS23315at 424.389 kb on + strand, within EX31_RS23315at 424.392 kb on + strand, within EX31_RS23315at 424.392 kb on + strand, within EX31_RS23315at 424.413 kb on + strand, within EX31_RS23315at 424.413 kb on + strand, within EX31_RS23315at 424.594 kb on + strandat 424.594 kb on + strandat 424.594 kb on + strandat 424.595 kb on - strandat 424.595 kb on - strandat 424.595 kb on - strandat 424.595 kb on - strandat 424.597 kb on + strandat 424.597 kb on + strandat 424.597 kb on + strandat 424.597 kb on + strandat 424.698 kb on + strand, within EX31_RS23320at 424.763 kb on - strand, within EX31_RS23320at 424.987 kb on + strand, within EX31_RS23320at 424.987 kb on + strand, within EX31_RS23320at 424.988 kb on - strand, within EX31_RS23320at 424.988 kb on - strand, within EX31_RS23320at 424.988 kb on - strand, within EX31_RS23320at 425.424 kb on + strand, within EX31_RS23320at 425.437 kb on + strand, within EX31_RS23320

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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422,952 + +2.4
422,953 - +0.1
422,953 - +0.1
423,061 + EX31_RS23310 0.19 -0.8
423,062 - EX31_RS23310 0.19 +0.6
423,062 - EX31_RS23310 0.19 +0.1
423,062 - EX31_RS23310 0.19 +0.4
423,131 + EX31_RS23310 0.27 +0.2
423,131 + EX31_RS23310 0.27 +0.4
423,132 - EX31_RS23310 0.28 +0.5
423,132 - EX31_RS23310 0.28 -0.8
423,132 - EX31_RS23310 0.28 -0.5
423,132 - EX31_RS23310 0.28 -0.2
423,225 + EX31_RS23310 0.39 +1.1
423,225 + EX31_RS23310 0.39 +1.1
423,225 + EX31_RS23310 0.39 -0.4
423,225 + EX31_RS23310 0.39 +1.6
423,225 + EX31_RS23310 0.39 +0.1
423,226 - EX31_RS23310 0.40 +0.1
423,226 - EX31_RS23310 0.40 +1.2
423,226 - EX31_RS23310 0.40 +0.0
423,226 - EX31_RS23310 0.40 -0.7
423,226 - EX31_RS23310 0.40 +0.2
423,226 - EX31_RS23310 0.40 +0.2
423,226 - EX31_RS23310 0.40 +0.8
423,227 + EX31_RS23310 0.40 -0.2
423,227 + EX31_RS23310 0.40 +0.8
423,228 - EX31_RS23310 0.40 -0.1
423,228 - EX31_RS23310 0.40 +0.9
423,229 + EX31_RS23310 0.40 -1.2
423,229 + EX31_RS23310 0.40 +1.5
423,229 + EX31_RS23310 0.40 +1.6
423,229 + EX31_RS23310 0.40 +1.8
423,229 + EX31_RS23310 0.40 +0.6
423,229 + EX31_RS23310 0.40 -0.8
423,229 + EX31_RS23310 0.40 +0.8
423,229 + EX31_RS23310 0.40 -1.9
423,229 + EX31_RS23310 0.40 +2.4
423,229 + EX31_RS23310 0.40 +0.5
423,229 + EX31_RS23310 0.40 -1.5
423,229 + EX31_RS23310 0.40 +0.4
423,229 + EX31_RS23310 0.40 -0.8
423,229 + EX31_RS23310 0.40 +0.4
423,229 + EX31_RS23310 0.40 +1.2
423,229 + EX31_RS23310 0.40 +0.2
423,229 + EX31_RS23310 0.40 +0.0
423,229 + EX31_RS23310 0.40 +0.8
423,229 + EX31_RS23310 0.40 -0.5
423,229 + EX31_RS23310 0.40 -2.4
423,229 + EX31_RS23310 0.40 +0.8
423,230 - EX31_RS23310 0.40 +0.8
423,230 - EX31_RS23310 0.40 -1.7
423,230 - EX31_RS23310 0.40 -0.2
423,230 - EX31_RS23310 0.40 +2.8
423,230 - EX31_RS23310 0.40 -1.0
423,230 - EX31_RS23310 0.40 -0.2
423,230 - EX31_RS23310 0.40 +2.2
423,230 - EX31_RS23310 0.40 +0.6
423,230 - EX31_RS23310 0.40 +0.8
423,230 - EX31_RS23310 0.40 -0.4
423,230 - EX31_RS23310 0.40 +0.5
423,230 - EX31_RS23310 0.40 +0.4
423,230 - EX31_RS23310 0.40 -0.8
423,230 - EX31_RS23310 0.40 -0.3
423,230 - EX31_RS23310 0.40 +0.3
423,230 - EX31_RS23310 0.40 +0.7
423,230 - EX31_RS23310 0.40 +0.5
423,230 - EX31_RS23310 0.40 +0.8
423,230 - EX31_RS23310 0.40 +0.2
423,230 - EX31_RS23310 0.40 +0.2
423,230 - EX31_RS23310 0.40 +0.6
423,233 + EX31_RS23310 0.40 +0.2
423,233 + EX31_RS23310 0.40 +1.4
423,233 + EX31_RS23310 0.40 -0.2
423,233 + EX31_RS23310 0.40 +0.9
423,233 + EX31_RS23310 0.40 +0.8
423,233 + EX31_RS23310 0.40 -2.0
423,233 + EX31_RS23310 0.40 +0.1
423,234 - EX31_RS23310 0.41 -0.2
423,234 - EX31_RS23310 0.41 -2.0
423,234 - EX31_RS23310 0.41 -0.1
423,234 - EX31_RS23310 0.41 +0.1
423,234 - EX31_RS23310 0.41 +0.1
423,257 + EX31_RS23310 0.44 +1.2
423,291 - EX31_RS23310 0.48 +1.6
423,493 + EX31_RS23310 0.74 -1.2
423,530 + EX31_RS23310 0.78 +1.0
423,554 + EX31_RS23310 0.81 +0.2
423,555 - EX31_RS23310 0.82 +0.8
423,594 - EX31_RS23310 0.87 +0.7
423,678 + +2.4
423,679 - +0.8
423,679 - -0.0
423,679 - -0.6
423,679 - -1.2
423,679 - -0.1
423,679 - -0.2
423,679 - -0.6
423,699 - +0.7
423,699 - +1.3
423,704 + -0.3
423,717 + -0.9
423,717 + +0.5
423,717 + -1.2
423,717 + +1.4
423,722 + +0.5
423,788 + +0.1
423,894 - +0.8
423,913 + -0.8
423,913 + +0.9
423,913 + -0.3
423,913 + -0.3
423,913 + -0.3
423,913 + -2.9
423,948 + -0.8
423,976 + +0.5
423,976 + +2.1
424,032 + EX31_RS23315 0.17 -0.8
424,032 + EX31_RS23315 0.17 -0.2
424,033 - EX31_RS23315 0.17 +1.5
424,044 + EX31_RS23315 0.19 -1.7
424,070 + EX31_RS23315 0.23 +0.8
424,221 + EX31_RS23315 0.51 +1.8
424,243 + EX31_RS23315 0.55 +0.8
424,243 + EX31_RS23315 0.55 -1.9
424,243 + EX31_RS23315 0.55 -2.6
424,243 + EX31_RS23315 0.55 +0.5
424,243 + EX31_RS23315 0.55 -0.0
424,243 + EX31_RS23315 0.55 -1.8
424,244 - EX31_RS23315 0.55 -1.5
424,306 + EX31_RS23315 0.66 -0.8
424,306 + EX31_RS23315 0.66 -0.5
424,306 + EX31_RS23315 0.66 -2.5
424,306 + EX31_RS23315 0.66 -1.8
424,306 + EX31_RS23315 0.66 +0.8
424,306 + EX31_RS23315 0.66 +0.0
424,350 + EX31_RS23315 0.74 -0.4
424,350 + EX31_RS23315 0.74 -1.2
424,359 + EX31_RS23315 0.75 -2.2
424,389 + EX31_RS23315 0.81 -0.6
424,392 + EX31_RS23315 0.81 -1.4
424,392 + EX31_RS23315 0.81 -0.7
424,413 + EX31_RS23315 0.85 +0.1
424,413 + EX31_RS23315 0.85 -0.2
424,594 + +6.4
424,594 + +5.2
424,594 + +2.7
424,595 - +4.6
424,595 - +6.3
424,595 - +4.6
424,595 - +4.0
424,597 + +4.5
424,597 + +4.6
424,597 + +5.3
424,597 + +4.7
424,698 + EX31_RS23320 0.11 +3.3
424,763 - EX31_RS23320 0.15 +4.7
424,987 + EX31_RS23320 0.28 +5.5
424,987 + EX31_RS23320 0.28 +5.3
424,988 - EX31_RS23320 0.29 +4.1
424,988 - EX31_RS23320 0.29 +5.6
424,988 - EX31_RS23320 0.29 +2.8
425,424 + EX31_RS23320 0.55 +5.3
425,437 + EX31_RS23320 0.56 +5.1

Or see this region's nucleotide sequence