Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21555 and EX31_RS21560 are separated by 15 nucleotides EX31_RS21560 and EX31_RS21565 overlap by 4 nucleotides EX31_RS21565 and EX31_RS21570 are separated by 379 nucleotides EX31_RS21570 and EX31_RS21575 are separated by 265 nucleotides
EX31_RS21555: EX31_RS21555 - ribulose-phosphate 3-epimerase, at 56,764 to 57,444
_RS21555
EX31_RS21560: EX31_RS21560 - allose kinase, at 57,460 to 58,404
_RS21560
EX31_RS21565: EX31_RS21565 - ribokinase, at 58,401 to 59,333
_RS21565
EX31_RS21570: EX31_RS21570 - hypothetical protein, at 59,713 to 60,033
_RS21570
EX31_RS21575: EX31_RS21575 - hypothetical protein, at 60,299 to 60,700
_RS21575
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.460 kb on - strand at 57.460 kb on - strand at 57.507 kb on - strand at 57.616 kb on + strand, within EX31_RS21560 at 57.616 kb on + strand, within EX31_RS21560 at 57.616 kb on + strand, within EX31_RS21560 at 57.617 kb on - strand, within EX31_RS21560 at 57.617 kb on - strand, within EX31_RS21560 at 57.677 kb on + strand, within EX31_RS21560 at 57.677 kb on + strand, within EX31_RS21560 at 57.678 kb on - strand, within EX31_RS21560 at 57.767 kb on + strand, within EX31_RS21560 at 57.767 kb on + strand, within EX31_RS21560 at 57.768 kb on - strand, within EX31_RS21560 at 57.768 kb on - strand, within EX31_RS21560 at 57.798 kb on + strand, within EX31_RS21560 at 57.821 kb on + strand, within EX31_RS21560 at 57.862 kb on + strand, within EX31_RS21560 at 57.863 kb on - strand, within EX31_RS21560 at 58.082 kb on + strand, within EX31_RS21560 at 58.082 kb on + strand, within EX31_RS21560 at 58.082 kb on + strand, within EX31_RS21560 at 58.082 kb on + strand, within EX31_RS21560 at 58.082 kb on + strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.083 kb on - strand, within EX31_RS21560 at 58.106 kb on + strand, within EX31_RS21560 at 58.106 kb on + strand, within EX31_RS21560 at 58.107 kb on - strand, within EX31_RS21560 at 58.172 kb on - strand, within EX31_RS21560 at 58.172 kb on - strand, within EX31_RS21560 at 58.238 kb on + strand, within EX31_RS21560 at 58.238 kb on + strand, within EX31_RS21560 at 58.238 kb on + strand, within EX31_RS21560 at 58.238 kb on + strand, within EX31_RS21560 at 58.239 kb on - strand, within EX31_RS21560 at 58.239 kb on - strand, within EX31_RS21560 at 58.239 kb on - strand, within EX31_RS21560 at 58.251 kb on - strand, within EX31_RS21560 at 58.251 kb on - strand, within EX31_RS21560 at 58.251 kb on - strand, within EX31_RS21560 at 58.251 kb on - strand, within EX31_RS21560 at 58.417 kb on + strand at 58.417 kb on + strand at 58.418 kb on - strand at 58.418 kb on - strand at 58.418 kb on - strand at 58.423 kb on + strand at 58.423 kb on + strand at 58.423 kb on + strand at 58.423 kb on + strand at 58.423 kb on + strand at 58.424 kb on - strand at 58.424 kb on - strand at 58.424 kb on - strand at 58.424 kb on - strand at 58.424 kb on - strand at 58.424 kb on - strand at 58.575 kb on + strand, within EX31_RS21565 at 58.575 kb on + strand, within EX31_RS21565 at 58.575 kb on + strand, within EX31_RS21565 at 58.575 kb on + strand, within EX31_RS21565 at 58.576 kb on - strand, within EX31_RS21565 at 58.576 kb on - strand, within EX31_RS21565 at 58.576 kb on - strand, within EX31_RS21565 at 58.576 kb on - strand, within EX31_RS21565 at 58.583 kb on + strand, within EX31_RS21565 at 58.584 kb on - strand, within EX31_RS21565 at 58.652 kb on + strand, within EX31_RS21565 at 58.652 kb on + strand, within EX31_RS21565 at 58.653 kb on - strand, within EX31_RS21565 at 58.699 kb on - strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.884 kb on + strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.885 kb on - strand, within EX31_RS21565 at 58.948 kb on + strand, within EX31_RS21565 at 59.072 kb on - strand, within EX31_RS21565 at 59.171 kb on + strand, within EX31_RS21565 at 59.241 kb on + strand at 59.241 kb on + strand at 59.241 kb on + strand at 59.242 kb on - strand at 59.242 kb on - strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.251 kb on + strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.252 kb on - strand at 59.292 kb on + strand at 59.292 kb on + strand at 59.292 kb on + strand at 59.292 kb on + strand at 59.293 kb on - strand at 59.293 kb on - strand at 59.293 kb on - strand at 59.350 kb on + strand at 59.350 kb on + strand at 59.350 kb on + strand at 59.351 kb on - strand at 59.427 kb on + strand at 59.428 kb on - strand at 59.477 kb on + strand at 59.477 kb on + strand at 59.478 kb on - strand at 59.478 kb on - strand at 59.478 kb on - strand at 59.479 kb on + strand at 59.504 kb on + strand at 59.553 kb on + strand at 59.553 kb on + strand at 59.553 kb on + strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.579 kb on + strand at 59.580 kb on - strand at 59.585 kb on - strand at 59.641 kb on - strand at 59.641 kb on - strand at 59.692 kb on + strand at 59.693 kb on - strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.818 kb on + strand, within EX31_RS21570 at 59.818 kb on + strand, within EX31_RS21570 at 59.819 kb on - strand, within EX31_RS21570 at 59.819 kb on - strand, within EX31_RS21570 at 59.898 kb on + strand, within EX31_RS21570 at 59.942 kb on - strand, within EX31_RS21570 at 60.100 kb on + strand at 60.116 kb on + strand at 60.190 kb on + strand at 60.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 57,460 - +0.3 57,460 - +0.2 57,507 - -0.5 57,616 + EX31_RS21560 0.17 -0.6 57,616 + EX31_RS21560 0.17 +1.8 57,616 + EX31_RS21560 0.17 +0.7 57,617 - EX31_RS21560 0.17 -0.1 57,617 - EX31_RS21560 0.17 +0.2 57,677 + EX31_RS21560 0.23 +0.3 57,677 + EX31_RS21560 0.23 +1.6 57,678 - EX31_RS21560 0.23 +0.4 57,767 + EX31_RS21560 0.32 +0.6 57,767 + EX31_RS21560 0.32 +0.9 57,768 - EX31_RS21560 0.33 -0.7 57,768 - EX31_RS21560 0.33 -0.3 57,798 + EX31_RS21560 0.36 -0.7 57,821 + EX31_RS21560 0.38 +0.9 57,862 + EX31_RS21560 0.43 +0.2 57,863 - EX31_RS21560 0.43 +0.7 58,082 + EX31_RS21560 0.66 +0.3 58,082 + EX31_RS21560 0.66 +1.3 58,082 + EX31_RS21560 0.66 -1.0 58,082 + EX31_RS21560 0.66 +0.8 58,082 + EX31_RS21560 0.66 +0.9 58,083 - EX31_RS21560 0.66 +0.6 58,083 - EX31_RS21560 0.66 -0.8 58,083 - EX31_RS21560 0.66 +0.4 58,083 - EX31_RS21560 0.66 -0.4 58,083 - EX31_RS21560 0.66 -1.7 58,083 - EX31_RS21560 0.66 -0.6 58,106 + EX31_RS21560 0.68 -0.2 58,106 + EX31_RS21560 0.68 -0.1 58,107 - EX31_RS21560 0.68 +0.9 58,172 - EX31_RS21560 0.75 +0.1 58,172 - EX31_RS21560 0.75 -0.4 58,238 + EX31_RS21560 0.82 +1.2 58,238 + EX31_RS21560 0.82 -1.1 58,238 + EX31_RS21560 0.82 -0.9 58,238 + EX31_RS21560 0.82 -0.3 58,239 - EX31_RS21560 0.82 -0.5 58,239 - EX31_RS21560 0.82 +0.4 58,239 - EX31_RS21560 0.82 +0.9 58,251 - EX31_RS21560 0.84 -1.0 58,251 - EX31_RS21560 0.84 +0.4 58,251 - EX31_RS21560 0.84 +0.2 58,251 - EX31_RS21560 0.84 +1.3 58,417 + +0.7 58,417 + +2.0 58,418 - -0.3 58,418 - +2.9 58,418 - +1.6 58,423 + -0.3 58,423 + -0.7 58,423 + -0.1 58,423 + +0.2 58,423 + +1.6 58,424 - +0.3 58,424 - +0.2 58,424 - +0.9 58,424 - +0.9 58,424 - +1.8 58,424 - +0.6 58,575 + EX31_RS21565 0.19 -0.1 58,575 + EX31_RS21565 0.19 +1.2 58,575 + EX31_RS21565 0.19 -1.3 58,575 + EX31_RS21565 0.19 -0.0 58,576 - EX31_RS21565 0.19 -2.1 58,576 - EX31_RS21565 0.19 +2.5 58,576 - EX31_RS21565 0.19 +0.0 58,576 - EX31_RS21565 0.19 +0.7 58,583 + EX31_RS21565 0.20 -0.1 58,584 - EX31_RS21565 0.20 +1.3 58,652 + EX31_RS21565 0.27 +1.6 58,652 + EX31_RS21565 0.27 +2.6 58,653 - EX31_RS21565 0.27 -0.3 58,699 - EX31_RS21565 0.32 -0.4 58,884 + EX31_RS21565 0.52 -0.2 58,884 + EX31_RS21565 0.52 +0.3 58,884 + EX31_RS21565 0.52 +0.5 58,884 + EX31_RS21565 0.52 +0.3 58,884 + EX31_RS21565 0.52 +1.5 58,884 + EX31_RS21565 0.52 +1.3 58,884 + EX31_RS21565 0.52 +1.0 58,884 + EX31_RS21565 0.52 +0.8 58,885 - EX31_RS21565 0.52 +0.4 58,885 - EX31_RS21565 0.52 +0.5 58,885 - EX31_RS21565 0.52 +0.4 58,885 - EX31_RS21565 0.52 +1.1 58,885 - EX31_RS21565 0.52 -0.4 58,885 - EX31_RS21565 0.52 +1.5 58,885 - EX31_RS21565 0.52 +1.0 58,885 - EX31_RS21565 0.52 +1.1 58,885 - EX31_RS21565 0.52 +2.2 58,885 - EX31_RS21565 0.52 +0.8 58,948 + EX31_RS21565 0.59 -0.7 59,072 - EX31_RS21565 0.72 +0.8 59,171 + EX31_RS21565 0.83 +0.1 59,241 + +0.7 59,241 + +2.5 59,241 + -1.4 59,242 - -0.1 59,242 - +0.2 59,251 + +0.9 59,251 + +1.5 59,251 + +0.9 59,251 + +1.2 59,251 + -1.0 59,251 + -1.5 59,251 + -0.1 59,251 + -0.2 59,251 + -0.5 59,251 + -1.0 59,251 + +1.4 59,252 - -1.0 59,252 - +0.8 59,252 - -0.4 59,252 - -0.8 59,252 - -0.2 59,252 - +0.9 59,252 - -1.4 59,252 - -0.1 59,252 - +0.6 59,252 - -0.1 59,252 - -2.1 59,252 - +1.4 59,252 - +0.6 59,292 + -1.1 59,292 + +0.0 59,292 + -2.1 59,292 + +0.1 59,293 - +0.3 59,293 - -0.4 59,293 - +0.4 59,350 + -0.7 59,350 + -0.3 59,350 + +0.7 59,351 - +1.3 59,427 + +2.2 59,428 - -0.3 59,477 + -0.7 59,477 + +0.5 59,478 - +1.4 59,478 - +0.1 59,478 - +1.9 59,479 + +0.1 59,504 + +0.0 59,553 + +2.5 59,553 + -1.5 59,553 + +0.6 59,554 - -0.7 59,554 - +0.7 59,554 - +0.7 59,554 - +1.9 59,579 + -1.3 59,580 - -0.0 59,585 - +1.2 59,641 - +1.9 59,641 - +1.2 59,692 + -0.7 59,693 - +0.3 59,709 + +0.3 59,709 + -0.7 59,710 - +0.3 59,710 - -1.0 59,818 + EX31_RS21570 0.33 +0.1 59,818 + EX31_RS21570 0.33 +0.5 59,819 - EX31_RS21570 0.33 +0.5 59,819 - EX31_RS21570 0.33 -0.1 59,898 + EX31_RS21570 0.58 -0.0 59,942 - EX31_RS21570 0.71 -0.5 60,100 + -0.4 60,116 + -1.8 60,190 + +0.4 60,282 - -2.1
Or see this region's nucleotide sequence