Strain Fitness in Rahnella sp. WP5 around EX31_RS20770

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS20765 and EX31_RS20770 are separated by 51 nucleotidesEX31_RS20770 and EX31_RS20775 are separated by 32 nucleotides EX31_RS20765: EX31_RS20765 - ABC transporter permease, at 800,154 to 801,125 _RS20765 EX31_RS20770: EX31_RS20770 - sugar ABC transporter ATP-binding protein, at 801,177 to 802,670 _RS20770 EX31_RS20775: EX31_RS20775 - substrate-binding domain-containing protein, at 802,703 to 803,746 _RS20775 Position (kb) 801 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.191 kb on - strandat 800.196 kb on - strandat 800.198 kb on + strandat 800.199 kb on - strandat 800.199 kb on - strandat 800.202 kb on - strandat 800.354 kb on + strand, within EX31_RS20765at 800.354 kb on + strand, within EX31_RS20765at 800.355 kb on - strand, within EX31_RS20765at 800.370 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.531 kb on + strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.532 kb on - strand, within EX31_RS20765at 800.533 kb on + strand, within EX31_RS20765at 800.533 kb on + strand, within EX31_RS20765at 800.533 kb on + strand, within EX31_RS20765at 800.533 kb on + strand, within EX31_RS20765at 800.588 kb on + strand, within EX31_RS20765at 800.631 kb on - strand, within EX31_RS20765at 800.672 kb on + strand, within EX31_RS20765at 800.812 kb on - strand, within EX31_RS20765at 800.912 kb on + strand, within EX31_RS20765at 800.912 kb on + strand, within EX31_RS20765at 800.939 kb on + strand, within EX31_RS20765at 800.940 kb on - strand, within EX31_RS20765at 800.964 kb on + strand, within EX31_RS20765at 800.967 kb on + strand, within EX31_RS20765at 800.967 kb on + strand, within EX31_RS20765at 800.967 kb on + strand, within EX31_RS20765at 800.967 kb on + strand, within EX31_RS20765at 800.967 kb on + strand, within EX31_RS20765at 800.968 kb on - strand, within EX31_RS20765at 800.969 kb on + strand, within EX31_RS20765at 800.969 kb on + strand, within EX31_RS20765at 800.970 kb on - strand, within EX31_RS20765at 800.970 kb on - strand, within EX31_RS20765at 800.970 kb on - strand, within EX31_RS20765at 800.970 kb on - strand, within EX31_RS20765at 800.970 kb on - strand, within EX31_RS20765at 801.029 kb on + strandat 801.030 kb on - strandat 801.064 kb on - strandat 801.064 kb on - strandat 801.064 kb on - strandat 801.074 kb on + strandat 801.075 kb on - strandat 801.079 kb on - strandat 801.092 kb on + strandat 801.092 kb on + strandat 801.111 kb on - strandat 801.125 kb on + strandat 801.125 kb on + strandat 801.125 kb on + strandat 801.129 kb on - strandat 801.129 kb on - strandat 801.147 kb on + strandat 801.148 kb on - strandat 801.148 kb on - strandat 801.148 kb on - strandat 801.163 kb on - strandat 801.221 kb on + strandat 801.287 kb on + strandat 801.288 kb on - strandat 801.288 kb on - strandat 801.288 kb on - strandat 801.294 kb on + strandat 801.295 kb on - strandat 801.362 kb on + strand, within EX31_RS20770at 801.363 kb on - strand, within EX31_RS20770at 801.365 kb on - strand, within EX31_RS20770at 801.387 kb on - strand, within EX31_RS20770at 801.425 kb on + strand, within EX31_RS20770at 801.425 kb on + strand, within EX31_RS20770at 801.425 kb on + strand, within EX31_RS20770at 801.426 kb on - strand, within EX31_RS20770at 801.501 kb on + strand, within EX31_RS20770at 801.502 kb on - strand, within EX31_RS20770at 801.506 kb on + strand, within EX31_RS20770at 801.506 kb on + strand, within EX31_RS20770at 801.507 kb on - strand, within EX31_RS20770at 801.507 kb on - strand, within EX31_RS20770at 801.507 kb on - strand, within EX31_RS20770at 801.551 kb on + strand, within EX31_RS20770at 801.552 kb on - strand, within EX31_RS20770at 801.587 kb on + strand, within EX31_RS20770at 801.614 kb on + strand, within EX31_RS20770at 801.638 kb on + strand, within EX31_RS20770at 801.639 kb on - strand, within EX31_RS20770at 801.791 kb on + strand, within EX31_RS20770at 801.916 kb on + strand, within EX31_RS20770at 801.968 kb on + strand, within EX31_RS20770at 801.968 kb on + strand, within EX31_RS20770at 801.968 kb on + strand, within EX31_RS20770at 801.968 kb on + strand, within EX31_RS20770at 801.968 kb on + strand, within EX31_RS20770at 801.969 kb on - strand, within EX31_RS20770at 801.969 kb on - strand, within EX31_RS20770at 801.969 kb on - strand, within EX31_RS20770at 801.969 kb on - strand, within EX31_RS20770at 801.969 kb on - strand, within EX31_RS20770at 801.992 kb on + strand, within EX31_RS20770at 801.992 kb on + strand, within EX31_RS20770at 802.014 kb on - strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.023 kb on + strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.024 kb on - strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.078 kb on + strand, within EX31_RS20770at 802.079 kb on - strand, within EX31_RS20770at 802.079 kb on - strand, within EX31_RS20770at 802.234 kb on - strand, within EX31_RS20770at 802.234 kb on - strand, within EX31_RS20770at 802.268 kb on + strand, within EX31_RS20770at 802.269 kb on - strand, within EX31_RS20770at 802.269 kb on - strand, within EX31_RS20770at 802.269 kb on - strand, within EX31_RS20770at 802.269 kb on - strand, within EX31_RS20770at 802.309 kb on + strand, within EX31_RS20770at 802.309 kb on + strand, within EX31_RS20770at 802.310 kb on - strand, within EX31_RS20770at 802.370 kb on + strand, within EX31_RS20770at 802.371 kb on - strand, within EX31_RS20770at 802.371 kb on - strand, within EX31_RS20770at 802.371 kb on - strand, within EX31_RS20770at 802.627 kb on + strandat 802.627 kb on + strandat 802.704 kb on + strandat 802.705 kb on - strandat 802.705 kb on - strandat 802.705 kb on - strandat 802.835 kb on + strand, within EX31_RS20775at 802.835 kb on + strand, within EX31_RS20775at 802.836 kb on - strand, within EX31_RS20775at 802.836 kb on - strand, within EX31_RS20775at 802.864 kb on + strand, within EX31_RS20775at 802.864 kb on + strand, within EX31_RS20775at 802.864 kb on + strand, within EX31_RS20775at 802.865 kb on - strand, within EX31_RS20775at 802.920 kb on + strand, within EX31_RS20775at 802.920 kb on + strand, within EX31_RS20775at 802.921 kb on - strand, within EX31_RS20775at 802.921 kb on - strand, within EX31_RS20775at 802.933 kb on + strand, within EX31_RS20775at 802.950 kb on - strand, within EX31_RS20775at 803.181 kb on + strand, within EX31_RS20775at 803.181 kb on + strand, within EX31_RS20775at 803.181 kb on + strand, within EX31_RS20775at 803.181 kb on + strand, within EX31_RS20775at 803.181 kb on + strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.182 kb on - strand, within EX31_RS20775at 803.259 kb on - strand, within EX31_RS20775at 803.259 kb on - strand, within EX31_RS20775at 803.276 kb on + strand, within EX31_RS20775at 803.289 kb on + strand, within EX31_RS20775at 803.289 kb on + strand, within EX31_RS20775at 803.290 kb on - strand, within EX31_RS20775at 803.290 kb on - strand, within EX31_RS20775at 803.290 kb on - strand, within EX31_RS20775at 803.484 kb on + strand, within EX31_RS20775at 803.507 kb on - strand, within EX31_RS20775at 803.507 kb on - strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.521 kb on + strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.522 kb on - strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.523 kb on + strand, within EX31_RS20775at 803.524 kb on - strand, within EX31_RS20775at 803.524 kb on - strand, within EX31_RS20775at 803.616 kb on + strand, within EX31_RS20775at 803.616 kb on + strand, within EX31_RS20775at 803.617 kb on - strand, within EX31_RS20775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
800,191 - -0.4
800,196 - +0.1
800,198 + +0.5
800,199 - -0.8
800,199 - +0.4
800,202 - +0.3
800,354 + EX31_RS20765 0.21 +0.2
800,354 + EX31_RS20765 0.21 +0.2
800,355 - EX31_RS20765 0.21 +0.1
800,370 + EX31_RS20765 0.22 -1.8
800,531 + EX31_RS20765 0.39 +0.1
800,531 + EX31_RS20765 0.39 +0.3
800,531 + EX31_RS20765 0.39 +0.1
800,531 + EX31_RS20765 0.39 -0.6
800,531 + EX31_RS20765 0.39 +1.2
800,531 + EX31_RS20765 0.39 +2.5
800,532 - EX31_RS20765 0.39 -0.5
800,532 - EX31_RS20765 0.39 +0.2
800,532 - EX31_RS20765 0.39 +0.3
800,532 - EX31_RS20765 0.39 +0.5
800,532 - EX31_RS20765 0.39 +1.0
800,532 - EX31_RS20765 0.39 +0.5
800,533 + EX31_RS20765 0.39 +0.7
800,533 + EX31_RS20765 0.39 +0.8
800,533 + EX31_RS20765 0.39 -0.3
800,533 + EX31_RS20765 0.39 -1.9
800,588 + EX31_RS20765 0.45 +0.5
800,631 - EX31_RS20765 0.49 +1.7
800,672 + EX31_RS20765 0.53 -1.1
800,812 - EX31_RS20765 0.68 -0.2
800,912 + EX31_RS20765 0.78 -0.5
800,912 + EX31_RS20765 0.78 -0.2
800,939 + EX31_RS20765 0.81 -1.5
800,940 - EX31_RS20765 0.81 +0.9
800,964 + EX31_RS20765 0.83 +0.1
800,967 + EX31_RS20765 0.84 +0.1
800,967 + EX31_RS20765 0.84 +1.1
800,967 + EX31_RS20765 0.84 -0.4
800,967 + EX31_RS20765 0.84 +0.5
800,967 + EX31_RS20765 0.84 -0.9
800,968 - EX31_RS20765 0.84 +0.1
800,969 + EX31_RS20765 0.84 +0.8
800,969 + EX31_RS20765 0.84 +0.1
800,970 - EX31_RS20765 0.84 -0.6
800,970 - EX31_RS20765 0.84 +0.9
800,970 - EX31_RS20765 0.84 +1.0
800,970 - EX31_RS20765 0.84 +0.4
800,970 - EX31_RS20765 0.84 +0.6
801,029 + -0.9
801,030 - -0.2
801,064 - +0.8
801,064 - -0.5
801,064 - +1.1
801,074 + -1.5
801,075 - +0.3
801,079 - +0.6
801,092 + -0.8
801,092 + +1.1
801,111 - -1.4
801,125 + +2.1
801,125 + +0.4
801,125 + +0.5
801,129 - +0.5
801,129 - +1.8
801,147 + +0.1
801,148 - -0.2
801,148 - -0.2
801,148 - -0.0
801,163 - -0.8
801,221 + -1.3
801,287 + +0.1
801,288 - +0.7
801,288 - +0.7
801,288 - +0.1
801,294 + -0.9
801,295 - +0.6
801,362 + EX31_RS20770 0.12 +0.2
801,363 - EX31_RS20770 0.12 +1.1
801,365 - EX31_RS20770 0.13 +0.6
801,387 - EX31_RS20770 0.14 +0.8
801,425 + EX31_RS20770 0.17 -0.3
801,425 + EX31_RS20770 0.17 -0.3
801,425 + EX31_RS20770 0.17 -0.3
801,426 - EX31_RS20770 0.17 +0.1
801,501 + EX31_RS20770 0.22 +0.7
801,502 - EX31_RS20770 0.22 +0.3
801,506 + EX31_RS20770 0.22 +0.3
801,506 + EX31_RS20770 0.22 -1.1
801,507 - EX31_RS20770 0.22 +1.1
801,507 - EX31_RS20770 0.22 -0.4
801,507 - EX31_RS20770 0.22 +0.3
801,551 + EX31_RS20770 0.25 +0.1
801,552 - EX31_RS20770 0.25 +1.3
801,587 + EX31_RS20770 0.27 +0.1
801,614 + EX31_RS20770 0.29 +0.9
801,638 + EX31_RS20770 0.31 +0.7
801,639 - EX31_RS20770 0.31 -1.3
801,791 + EX31_RS20770 0.41 -3.1
801,916 + EX31_RS20770 0.49 -0.4
801,968 + EX31_RS20770 0.53 -0.2
801,968 + EX31_RS20770 0.53 +0.3
801,968 + EX31_RS20770 0.53 +0.1
801,968 + EX31_RS20770 0.53 -0.5
801,968 + EX31_RS20770 0.53 +0.5
801,969 - EX31_RS20770 0.53 -0.6
801,969 - EX31_RS20770 0.53 +0.8
801,969 - EX31_RS20770 0.53 -1.8
801,969 - EX31_RS20770 0.53 -1.3
801,969 - EX31_RS20770 0.53 +0.4
801,992 + EX31_RS20770 0.55 +1.2
801,992 + EX31_RS20770 0.55 +0.5
802,014 - EX31_RS20770 0.56 +0.1
802,023 + EX31_RS20770 0.57 +0.6
802,023 + EX31_RS20770 0.57 +0.2
802,023 + EX31_RS20770 0.57 +0.1
802,023 + EX31_RS20770 0.57 -1.8
802,023 + EX31_RS20770 0.57 +0.6
802,023 + EX31_RS20770 0.57 -0.5
802,023 + EX31_RS20770 0.57 +0.3
802,023 + EX31_RS20770 0.57 -0.1
802,024 - EX31_RS20770 0.57 -0.6
802,024 - EX31_RS20770 0.57 +1.8
802,024 - EX31_RS20770 0.57 +0.4
802,024 - EX31_RS20770 0.57 +0.1
802,024 - EX31_RS20770 0.57 -0.3
802,024 - EX31_RS20770 0.57 +0.7
802,078 + EX31_RS20770 0.60 +0.8
802,078 + EX31_RS20770 0.60 -1.1
802,078 + EX31_RS20770 0.60 -1.1
802,078 + EX31_RS20770 0.60 +1.9
802,078 + EX31_RS20770 0.60 -1.9
802,078 + EX31_RS20770 0.60 +0.1
802,078 + EX31_RS20770 0.60 -0.1
802,078 + EX31_RS20770 0.60 +0.9
802,078 + EX31_RS20770 0.60 +1.2
802,078 + EX31_RS20770 0.60 -0.4
802,078 + EX31_RS20770 0.60 +0.1
802,079 - EX31_RS20770 0.60 -1.3
802,079 - EX31_RS20770 0.60 +0.7
802,234 - EX31_RS20770 0.71 +0.1
802,234 - EX31_RS20770 0.71 +1.8
802,268 + EX31_RS20770 0.73 +0.5
802,269 - EX31_RS20770 0.73 -1.1
802,269 - EX31_RS20770 0.73 +1.8
802,269 - EX31_RS20770 0.73 -0.3
802,269 - EX31_RS20770 0.73 -0.6
802,309 + EX31_RS20770 0.76 -0.5
802,309 + EX31_RS20770 0.76 +0.1
802,310 - EX31_RS20770 0.76 +0.7
802,370 + EX31_RS20770 0.80 +0.8
802,371 - EX31_RS20770 0.80 -1.3
802,371 - EX31_RS20770 0.80 +0.4
802,371 - EX31_RS20770 0.80 +0.5
802,627 + +1.4
802,627 + -0.5
802,704 + +0.1
802,705 - -0.7
802,705 - +0.7
802,705 - -2.0
802,835 + EX31_RS20775 0.13 -0.2
802,835 + EX31_RS20775 0.13 -1.4
802,836 - EX31_RS20775 0.13 +1.1
802,836 - EX31_RS20775 0.13 +0.1
802,864 + EX31_RS20775 0.15 +1.7
802,864 + EX31_RS20775 0.15 +0.6
802,864 + EX31_RS20775 0.15 +0.9
802,865 - EX31_RS20775 0.16 +0.5
802,920 + EX31_RS20775 0.21 +0.3
802,920 + EX31_RS20775 0.21 +0.8
802,921 - EX31_RS20775 0.21 -0.6
802,921 - EX31_RS20775 0.21 -0.9
802,933 + EX31_RS20775 0.22 +0.2
802,950 - EX31_RS20775 0.24 -0.1
803,181 + EX31_RS20775 0.46 +0.3
803,181 + EX31_RS20775 0.46 +0.0
803,181 + EX31_RS20775 0.46 -0.5
803,181 + EX31_RS20775 0.46 -0.2
803,181 + EX31_RS20775 0.46 -1.4
803,182 - EX31_RS20775 0.46 +0.1
803,182 - EX31_RS20775 0.46 -2.4
803,182 - EX31_RS20775 0.46 -1.9
803,182 - EX31_RS20775 0.46 -1.1
803,182 - EX31_RS20775 0.46 -0.5
803,182 - EX31_RS20775 0.46 +0.2
803,182 - EX31_RS20775 0.46 +0.7
803,182 - EX31_RS20775 0.46 +1.1
803,259 - EX31_RS20775 0.53 +0.2
803,259 - EX31_RS20775 0.53 +0.7
803,276 + EX31_RS20775 0.55 +1.8
803,289 + EX31_RS20775 0.56 +0.9
803,289 + EX31_RS20775 0.56 -1.5
803,290 - EX31_RS20775 0.56 +2.5
803,290 - EX31_RS20775 0.56 -1.1
803,290 - EX31_RS20775 0.56 -1.1
803,484 + EX31_RS20775 0.75 -0.2
803,507 - EX31_RS20775 0.77 +0.3
803,507 - EX31_RS20775 0.77 +2.1
803,521 + EX31_RS20775 0.78 -0.7
803,521 + EX31_RS20775 0.78 +0.9
803,521 + EX31_RS20775 0.78 +1.2
803,521 + EX31_RS20775 0.78 +0.1
803,521 + EX31_RS20775 0.78 -0.0
803,521 + EX31_RS20775 0.78 +0.4
803,521 + EX31_RS20775 0.78 +0.5
803,521 + EX31_RS20775 0.78 -1.3
803,522 - EX31_RS20775 0.78 +0.1
803,522 - EX31_RS20775 0.78 +0.9
803,522 - EX31_RS20775 0.78 +0.2
803,522 - EX31_RS20775 0.78 -0.3
803,522 - EX31_RS20775 0.78 +0.6
803,522 - EX31_RS20775 0.78 -0.2
803,522 - EX31_RS20775 0.78 +0.2
803,523 + EX31_RS20775 0.79 -0.9
803,523 + EX31_RS20775 0.79 +1.1
803,523 + EX31_RS20775 0.79 -1.3
803,523 + EX31_RS20775 0.79 +1.6
803,523 + EX31_RS20775 0.79 -1.0
803,523 + EX31_RS20775 0.79 +0.1
803,523 + EX31_RS20775 0.79 +2.2
803,524 - EX31_RS20775 0.79 +1.3
803,524 - EX31_RS20775 0.79 +0.2
803,616 + EX31_RS20775 0.87 +0.1
803,616 + EX31_RS20775 0.87 +0.8
803,617 - EX31_RS20775 0.88 +0.6

Or see this region's nucleotide sequence