Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20755 and EX31_RS20760 are separated by 1 nucleotides EX31_RS20760 and EX31_RS20765 overlap by 1 nucleotides EX31_RS20765 and EX31_RS20770 are separated by 51 nucleotides
EX31_RS20755: EX31_RS20755 - ribokinase, at 798,435 to 799,295
_RS20755
EX31_RS20760: EX31_RS20760 - MurR/RpiR family transcriptional regulator, at 799,297 to 800,154
_RS20760
EX31_RS20765: EX31_RS20765 - ABC transporter permease, at 800,154 to 801,125
_RS20765
EX31_RS20770: EX31_RS20770 - sugar ABC transporter ATP-binding protein, at 801,177 to 802,670
_RS20770
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.190 kb on + strand, within EX31_RS20755 at 799.190 kb on + strand, within EX31_RS20755 at 799.190 kb on + strand, within EX31_RS20755 at 799.191 kb on - strand, within EX31_RS20755 at 799.192 kb on + strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.261 kb on + strand at 799.262 kb on - strand at 799.262 kb on - strand at 799.281 kb on + strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.402 kb on - strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.509 kb on - strand, within EX31_RS20760 at 799.696 kb on - strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.806 kb on + strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.811 kb on - strand, within EX31_RS20760 at 799.811 kb on - strand, within EX31_RS20760 at 799.834 kb on - strand, within EX31_RS20760 at 799.859 kb on - strand, within EX31_RS20760 at 799.916 kb on + strand, within EX31_RS20760 at 800.156 kb on - strand at 800.156 kb on - strand at 800.156 kb on - strand at 800.156 kb on - strand at 800.191 kb on - strand at 800.196 kb on - strand at 800.198 kb on + strand at 800.199 kb on - strand at 800.199 kb on - strand at 800.202 kb on - strand at 800.354 kb on + strand, within EX31_RS20765 at 800.354 kb on + strand, within EX31_RS20765 at 800.355 kb on - strand, within EX31_RS20765 at 800.370 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.531 kb on + strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.532 kb on - strand, within EX31_RS20765 at 800.533 kb on + strand, within EX31_RS20765 at 800.533 kb on + strand, within EX31_RS20765 at 800.533 kb on + strand, within EX31_RS20765 at 800.533 kb on + strand, within EX31_RS20765 at 800.588 kb on + strand, within EX31_RS20765 at 800.631 kb on - strand, within EX31_RS20765 at 800.672 kb on + strand, within EX31_RS20765 at 800.812 kb on - strand, within EX31_RS20765 at 800.912 kb on + strand, within EX31_RS20765 at 800.912 kb on + strand, within EX31_RS20765 at 800.939 kb on + strand, within EX31_RS20765 at 800.940 kb on - strand, within EX31_RS20765 at 800.964 kb on + strand, within EX31_RS20765 at 800.967 kb on + strand, within EX31_RS20765 at 800.967 kb on + strand, within EX31_RS20765 at 800.967 kb on + strand, within EX31_RS20765 at 800.967 kb on + strand, within EX31_RS20765 at 800.967 kb on + strand, within EX31_RS20765 at 800.968 kb on - strand, within EX31_RS20765 at 800.969 kb on + strand, within EX31_RS20765 at 800.969 kb on + strand, within EX31_RS20765 at 800.970 kb on - strand, within EX31_RS20765 at 800.970 kb on - strand, within EX31_RS20765 at 800.970 kb on - strand, within EX31_RS20765 at 800.970 kb on - strand, within EX31_RS20765 at 800.970 kb on - strand, within EX31_RS20765 at 801.029 kb on + strand at 801.030 kb on - strand at 801.064 kb on - strand at 801.064 kb on - strand at 801.064 kb on - strand at 801.074 kb on + strand at 801.075 kb on - strand at 801.079 kb on - strand at 801.092 kb on + strand at 801.092 kb on + strand at 801.111 kb on - strand at 801.125 kb on + strand at 801.125 kb on + strand at 801.125 kb on + strand at 801.129 kb on - strand at 801.129 kb on - strand at 801.147 kb on + strand at 801.148 kb on - strand at 801.148 kb on - strand at 801.148 kb on - strand at 801.163 kb on - strand at 801.221 kb on + strand at 801.287 kb on + strand at 801.288 kb on - strand at 801.288 kb on - strand at 801.288 kb on - strand at 801.294 kb on + strand at 801.295 kb on - strand at 801.362 kb on + strand, within EX31_RS20770 at 801.363 kb on - strand, within EX31_RS20770 at 801.365 kb on - strand, within EX31_RS20770 at 801.387 kb on - strand, within EX31_RS20770 at 801.425 kb on + strand, within EX31_RS20770 at 801.425 kb on + strand, within EX31_RS20770 at 801.425 kb on + strand, within EX31_RS20770 at 801.426 kb on - strand, within EX31_RS20770 at 801.501 kb on + strand, within EX31_RS20770 at 801.502 kb on - strand, within EX31_RS20770 at 801.506 kb on + strand, within EX31_RS20770 at 801.506 kb on + strand, within EX31_RS20770 at 801.507 kb on - strand, within EX31_RS20770 at 801.507 kb on - strand, within EX31_RS20770 at 801.507 kb on - strand, within EX31_RS20770 at 801.551 kb on + strand, within EX31_RS20770 at 801.552 kb on - strand, within EX31_RS20770 at 801.587 kb on + strand, within EX31_RS20770 at 801.614 kb on + strand, within EX31_RS20770 at 801.638 kb on + strand, within EX31_RS20770 at 801.639 kb on - strand, within EX31_RS20770 at 801.791 kb on + strand, within EX31_RS20770 at 801.916 kb on + strand, within EX31_RS20770 at 801.968 kb on + strand, within EX31_RS20770 at 801.968 kb on + strand, within EX31_RS20770 at 801.968 kb on + strand, within EX31_RS20770 at 801.968 kb on + strand, within EX31_RS20770 at 801.968 kb on + strand, within EX31_RS20770 at 801.969 kb on - strand, within EX31_RS20770 at 801.969 kb on - strand, within EX31_RS20770 at 801.969 kb on - strand, within EX31_RS20770 at 801.969 kb on - strand, within EX31_RS20770 at 801.969 kb on - strand, within EX31_RS20770 at 801.992 kb on + strand, within EX31_RS20770 at 801.992 kb on + strand, within EX31_RS20770 at 802.014 kb on - strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.023 kb on + strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.024 kb on - strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.078 kb on + strand, within EX31_RS20770 at 802.079 kb on - strand, within EX31_RS20770 at 802.079 kb on - strand, within EX31_RS20770
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 799,190 + EX31_RS20755 0.88 -0.8 799,190 + EX31_RS20755 0.88 +1.4 799,190 + EX31_RS20755 0.88 -0.0 799,191 - EX31_RS20755 0.88 -1.0 799,192 + EX31_RS20755 0.88 -0.5 799,193 - EX31_RS20755 0.88 -0.5 799,193 - EX31_RS20755 0.88 +0.8 799,193 - EX31_RS20755 0.88 -0.4 799,193 - EX31_RS20755 0.88 +0.2 799,193 - EX31_RS20755 0.88 +0.6 799,193 - EX31_RS20755 0.88 +1.0 799,261 + +1.3 799,262 - -1.5 799,262 - -0.5 799,281 + -0.0 799,299 - -0.5 799,299 - +2.1 799,299 - +1.3 799,299 - +1.1 799,299 - -0.2 799,402 - EX31_RS20760 0.12 -0.1 799,508 + EX31_RS20760 0.25 +1.2 799,508 + EX31_RS20760 0.25 +1.8 799,508 + EX31_RS20760 0.25 +1.7 799,508 + EX31_RS20760 0.25 +0.6 799,509 - EX31_RS20760 0.25 +1.6 799,696 - EX31_RS20760 0.47 +3.2 799,739 + EX31_RS20760 0.52 +1.1 799,739 + EX31_RS20760 0.52 +1.6 799,739 + EX31_RS20760 0.52 +3.1 799,740 - EX31_RS20760 0.52 +1.5 799,740 - EX31_RS20760 0.52 +1.4 799,740 - EX31_RS20760 0.52 +1.2 799,740 - EX31_RS20760 0.52 +2.0 799,740 - EX31_RS20760 0.52 +2.6 799,740 - EX31_RS20760 0.52 +0.1 799,740 - EX31_RS20760 0.52 +1.4 799,740 - EX31_RS20760 0.52 +0.6 799,740 - EX31_RS20760 0.52 +1.4 799,742 - EX31_RS20760 0.52 +1.5 799,742 - EX31_RS20760 0.52 +1.1 799,742 - EX31_RS20760 0.52 +0.5 799,742 - EX31_RS20760 0.52 +0.9 799,742 - EX31_RS20760 0.52 +1.4 799,742 - EX31_RS20760 0.52 +1.6 799,742 - EX31_RS20760 0.52 +2.5 799,806 + EX31_RS20760 0.59 +0.7 799,807 - EX31_RS20760 0.59 +1.4 799,807 - EX31_RS20760 0.59 +1.1 799,807 - EX31_RS20760 0.59 +1.6 799,807 - EX31_RS20760 0.59 -0.0 799,807 - EX31_RS20760 0.59 +2.1 799,811 - EX31_RS20760 0.60 +1.8 799,811 - EX31_RS20760 0.60 +2.2 799,834 - EX31_RS20760 0.63 +2.2 799,859 - EX31_RS20760 0.66 +0.9 799,916 + EX31_RS20760 0.72 -1.3 800,156 - +2.2 800,156 - +0.5 800,156 - +1.5 800,156 - +1.0 800,191 - -0.4 800,196 - +0.1 800,198 + +0.5 800,199 - -0.8 800,199 - +0.4 800,202 - +0.3 800,354 + EX31_RS20765 0.21 +0.2 800,354 + EX31_RS20765 0.21 +0.2 800,355 - EX31_RS20765 0.21 +0.1 800,370 + EX31_RS20765 0.22 -1.8 800,531 + EX31_RS20765 0.39 +0.1 800,531 + EX31_RS20765 0.39 +0.3 800,531 + EX31_RS20765 0.39 +0.1 800,531 + EX31_RS20765 0.39 -0.6 800,531 + EX31_RS20765 0.39 +1.2 800,531 + EX31_RS20765 0.39 +2.5 800,532 - EX31_RS20765 0.39 -0.5 800,532 - EX31_RS20765 0.39 +0.2 800,532 - EX31_RS20765 0.39 +0.3 800,532 - EX31_RS20765 0.39 +0.5 800,532 - EX31_RS20765 0.39 +1.0 800,532 - EX31_RS20765 0.39 +0.5 800,533 + EX31_RS20765 0.39 +0.7 800,533 + EX31_RS20765 0.39 +0.8 800,533 + EX31_RS20765 0.39 -0.3 800,533 + EX31_RS20765 0.39 -1.9 800,588 + EX31_RS20765 0.45 +0.5 800,631 - EX31_RS20765 0.49 +1.7 800,672 + EX31_RS20765 0.53 -1.1 800,812 - EX31_RS20765 0.68 -0.2 800,912 + EX31_RS20765 0.78 -0.5 800,912 + EX31_RS20765 0.78 -0.2 800,939 + EX31_RS20765 0.81 -1.5 800,940 - EX31_RS20765 0.81 +0.9 800,964 + EX31_RS20765 0.83 +0.1 800,967 + EX31_RS20765 0.84 +0.1 800,967 + EX31_RS20765 0.84 +1.1 800,967 + EX31_RS20765 0.84 -0.4 800,967 + EX31_RS20765 0.84 +0.5 800,967 + EX31_RS20765 0.84 -0.9 800,968 - EX31_RS20765 0.84 +0.1 800,969 + EX31_RS20765 0.84 +0.8 800,969 + EX31_RS20765 0.84 +0.1 800,970 - EX31_RS20765 0.84 -0.6 800,970 - EX31_RS20765 0.84 +0.9 800,970 - EX31_RS20765 0.84 +1.0 800,970 - EX31_RS20765 0.84 +0.4 800,970 - EX31_RS20765 0.84 +0.6 801,029 + -0.9 801,030 - -0.2 801,064 - +0.8 801,064 - -0.5 801,064 - +1.1 801,074 + -1.5 801,075 - +0.3 801,079 - +0.6 801,092 + -0.8 801,092 + +1.1 801,111 - -1.4 801,125 + +2.1 801,125 + +0.4 801,125 + +0.5 801,129 - +0.5 801,129 - +1.8 801,147 + +0.1 801,148 - -0.2 801,148 - -0.2 801,148 - -0.0 801,163 - -0.8 801,221 + -1.3 801,287 + +0.1 801,288 - +0.7 801,288 - +0.7 801,288 - +0.1 801,294 + -0.9 801,295 - +0.6 801,362 + EX31_RS20770 0.12 +0.2 801,363 - EX31_RS20770 0.12 +1.1 801,365 - EX31_RS20770 0.13 +0.6 801,387 - EX31_RS20770 0.14 +0.8 801,425 + EX31_RS20770 0.17 -0.3 801,425 + EX31_RS20770 0.17 -0.3 801,425 + EX31_RS20770 0.17 -0.3 801,426 - EX31_RS20770 0.17 +0.1 801,501 + EX31_RS20770 0.22 +0.7 801,502 - EX31_RS20770 0.22 +0.3 801,506 + EX31_RS20770 0.22 +0.3 801,506 + EX31_RS20770 0.22 -1.1 801,507 - EX31_RS20770 0.22 +1.1 801,507 - EX31_RS20770 0.22 -0.4 801,507 - EX31_RS20770 0.22 +0.3 801,551 + EX31_RS20770 0.25 +0.1 801,552 - EX31_RS20770 0.25 +1.3 801,587 + EX31_RS20770 0.27 +0.1 801,614 + EX31_RS20770 0.29 +0.9 801,638 + EX31_RS20770 0.31 +0.7 801,639 - EX31_RS20770 0.31 -1.3 801,791 + EX31_RS20770 0.41 -3.1 801,916 + EX31_RS20770 0.49 -0.4 801,968 + EX31_RS20770 0.53 -0.2 801,968 + EX31_RS20770 0.53 +0.3 801,968 + EX31_RS20770 0.53 +0.1 801,968 + EX31_RS20770 0.53 -0.5 801,968 + EX31_RS20770 0.53 +0.5 801,969 - EX31_RS20770 0.53 -0.6 801,969 - EX31_RS20770 0.53 +0.8 801,969 - EX31_RS20770 0.53 -1.8 801,969 - EX31_RS20770 0.53 -1.3 801,969 - EX31_RS20770 0.53 +0.4 801,992 + EX31_RS20770 0.55 +1.2 801,992 + EX31_RS20770 0.55 +0.5 802,014 - EX31_RS20770 0.56 +0.1 802,023 + EX31_RS20770 0.57 +0.6 802,023 + EX31_RS20770 0.57 +0.2 802,023 + EX31_RS20770 0.57 +0.1 802,023 + EX31_RS20770 0.57 -1.8 802,023 + EX31_RS20770 0.57 +0.6 802,023 + EX31_RS20770 0.57 -0.5 802,023 + EX31_RS20770 0.57 +0.3 802,023 + EX31_RS20770 0.57 -0.1 802,024 - EX31_RS20770 0.57 -0.6 802,024 - EX31_RS20770 0.57 +1.8 802,024 - EX31_RS20770 0.57 +0.4 802,024 - EX31_RS20770 0.57 +0.1 802,024 - EX31_RS20770 0.57 -0.3 802,024 - EX31_RS20770 0.57 +0.7 802,078 + EX31_RS20770 0.60 +0.8 802,078 + EX31_RS20770 0.60 -1.1 802,078 + EX31_RS20770 0.60 -1.1 802,078 + EX31_RS20770 0.60 +1.9 802,078 + EX31_RS20770 0.60 -1.9 802,078 + EX31_RS20770 0.60 +0.1 802,078 + EX31_RS20770 0.60 -0.1 802,078 + EX31_RS20770 0.60 +0.9 802,078 + EX31_RS20770 0.60 +1.2 802,078 + EX31_RS20770 0.60 -0.4 802,078 + EX31_RS20770 0.60 +0.1 802,079 - EX31_RS20770 0.60 -1.3 802,079 - EX31_RS20770 0.60 +0.7
Or see this region's nucleotide sequence