Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20675 and EX31_RS20680 are separated by 128 nucleotides EX31_RS20680 and EX31_RS20685 are separated by 90 nucleotides EX31_RS20685 and EX31_RS20690 are separated by 68 nucleotides
EX31_RS20675: EX31_RS20675 - DUF1615 domain-containing protein, at 777,992 to 779,098
_RS20675
EX31_RS20680: EX31_RS20680 - DUF3053 domain-containing protein, at 779,227 to 779,955
_RS20680
EX31_RS20685: EX31_RS20685 - hypothetical protein, at 780,046 to 780,318
_RS20685
EX31_RS20690: EX31_RS20690 - diguanylate cyclase, at 780,387 to 781,949
_RS20690
Position (kb) 779
780 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 778.285 kb on + strand, within EX31_RS20675 at 778.297 kb on - strand, within EX31_RS20675 at 778.300 kb on + strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.301 kb on - strand, within EX31_RS20675 at 778.342 kb on + strand, within EX31_RS20675 at 778.342 kb on + strand, within EX31_RS20675 at 778.343 kb on - strand, within EX31_RS20675 at 778.343 kb on - strand, within EX31_RS20675 at 778.343 kb on - strand, within EX31_RS20675 at 778.380 kb on + strand, within EX31_RS20675 at 778.381 kb on - strand, within EX31_RS20675 at 778.381 kb on - strand, within EX31_RS20675 at 778.393 kb on + strand, within EX31_RS20675 at 778.393 kb on + strand, within EX31_RS20675 at 778.393 kb on + strand, within EX31_RS20675 at 778.394 kb on - strand, within EX31_RS20675 at 778.394 kb on - strand, within EX31_RS20675 at 778.410 kb on + strand, within EX31_RS20675 at 778.410 kb on + strand, within EX31_RS20675 at 778.412 kb on + strand, within EX31_RS20675 at 778.412 kb on + strand, within EX31_RS20675 at 778.413 kb on - strand, within EX31_RS20675 at 778.425 kb on + strand, within EX31_RS20675 at 778.425 kb on + strand, within EX31_RS20675 at 778.426 kb on - strand, within EX31_RS20675 at 778.464 kb on + strand, within EX31_RS20675 at 778.464 kb on + strand, within EX31_RS20675 at 778.465 kb on - strand, within EX31_RS20675 at 778.516 kb on + strand, within EX31_RS20675 at 778.517 kb on - strand, within EX31_RS20675 at 778.519 kb on - strand, within EX31_RS20675 at 778.580 kb on - strand, within EX31_RS20675 at 778.627 kb on + strand, within EX31_RS20675 at 778.627 kb on + strand, within EX31_RS20675 at 778.627 kb on + strand, within EX31_RS20675 at 778.628 kb on - strand, within EX31_RS20675 at 778.628 kb on - strand, within EX31_RS20675 at 778.628 kb on - strand, within EX31_RS20675 at 778.628 kb on - strand, within EX31_RS20675 at 778.673 kb on + strand, within EX31_RS20675 at 778.673 kb on + strand, within EX31_RS20675 at 778.673 kb on + strand, within EX31_RS20675 at 778.674 kb on - strand, within EX31_RS20675 at 778.674 kb on - strand, within EX31_RS20675 at 778.674 kb on - strand, within EX31_RS20675 at 778.870 kb on + strand, within EX31_RS20675 at 778.871 kb on - strand, within EX31_RS20675 at 779.029 kb on + strand at 779.029 kb on + strand at 779.030 kb on - strand at 779.030 kb on - strand at 779.030 kb on - strand at 779.105 kb on - strand at 779.148 kb on + strand at 779.148 kb on + strand at 779.148 kb on + strand at 779.148 kb on + strand at 779.148 kb on + strand at 779.148 kb on + strand at 779.149 kb on - strand at 779.149 kb on - strand at 779.149 kb on - strand at 779.149 kb on - strand at 779.149 kb on - strand at 779.149 kb on - strand at 779.152 kb on + strand at 779.152 kb on + strand at 779.152 kb on + strand at 779.162 kb on + strand at 779.174 kb on - strand at 779.192 kb on + strand at 779.193 kb on - strand at 779.212 kb on + strand at 779.250 kb on - strand at 779.283 kb on + strand at 779.283 kb on + strand at 779.283 kb on + strand at 779.283 kb on + strand at 779.284 kb on - strand at 779.284 kb on - strand at 779.284 kb on - strand at 779.284 kb on - strand at 779.354 kb on + strand, within EX31_RS20680 at 779.440 kb on + strand, within EX31_RS20680 at 779.440 kb on + strand, within EX31_RS20680 at 779.440 kb on + strand, within EX31_RS20680 at 779.441 kb on - strand, within EX31_RS20680 at 779.441 kb on - strand, within EX31_RS20680 at 779.441 kb on - strand, within EX31_RS20680 at 779.441 kb on - strand, within EX31_RS20680 at 779.461 kb on - strand, within EX31_RS20680 at 779.461 kb on - strand, within EX31_RS20680 at 779.461 kb on - strand, within EX31_RS20680 at 779.537 kb on + strand, within EX31_RS20680 at 779.689 kb on + strand, within EX31_RS20680 at 779.702 kb on - strand, within EX31_RS20680 at 779.702 kb on - strand, within EX31_RS20680 at 779.718 kb on + strand, within EX31_RS20680 at 779.719 kb on - strand, within EX31_RS20680 at 779.719 kb on - strand, within EX31_RS20680 at 779.780 kb on + strand, within EX31_RS20680 at 779.781 kb on - strand, within EX31_RS20680 at 779.781 kb on - strand, within EX31_RS20680 at 779.868 kb on + strand, within EX31_RS20680 at 779.868 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.872 kb on + strand, within EX31_RS20680 at 779.873 kb on - strand, within EX31_RS20680 at 779.873 kb on - strand, within EX31_RS20680 at 779.873 kb on - strand, within EX31_RS20680 at 779.873 kb on - strand, within EX31_RS20680 at 779.873 kb on - strand, within EX31_RS20680 at 780.029 kb on + strand at 780.029 kb on + strand at 780.029 kb on + strand at 780.030 kb on - strand at 780.030 kb on - strand at 780.030 kb on - strand at 780.030 kb on - strand at 780.030 kb on - strand at 780.034 kb on - strand at 780.034 kb on - strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.045 kb on + strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.046 kb on - strand at 780.316 kb on + strand at 780.316 kb on + strand at 780.317 kb on - strand at 780.388 kb on + strand at 780.407 kb on + strand at 780.408 kb on - strand at 780.431 kb on - strand at 780.431 kb on - strand at 780.440 kb on + strand at 780.786 kb on + strand, within EX31_RS20690 at 780.787 kb on - strand, within EX31_RS20690 at 780.795 kb on - strand, within EX31_RS20690 at 780.934 kb on + strand, within EX31_RS20690 at 780.934 kb on + strand, within EX31_RS20690 at 780.935 kb on - strand, within EX31_RS20690 at 780.935 kb on - strand, within EX31_RS20690 at 780.937 kb on + strand, within EX31_RS20690 at 780.938 kb on - strand, within EX31_RS20690 at 780.938 kb on - strand, within EX31_RS20690 at 780.938 kb on - strand, within EX31_RS20690
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 778,285 + EX31_RS20675 0.26 +0.6 778,297 - EX31_RS20675 0.28 -1.4 778,300 + EX31_RS20675 0.28 +0.5 778,301 - EX31_RS20675 0.28 +1.3 778,301 - EX31_RS20675 0.28 +2.2 778,301 - EX31_RS20675 0.28 +0.2 778,301 - EX31_RS20675 0.28 +0.8 778,301 - EX31_RS20675 0.28 -0.0 778,301 - EX31_RS20675 0.28 +0.6 778,301 - EX31_RS20675 0.28 -0.7 778,342 + EX31_RS20675 0.32 +1.1 778,342 + EX31_RS20675 0.32 +0.3 778,343 - EX31_RS20675 0.32 +1.8 778,343 - EX31_RS20675 0.32 -2.5 778,343 - EX31_RS20675 0.32 +0.4 778,380 + EX31_RS20675 0.35 +3.8 778,381 - EX31_RS20675 0.35 -0.7 778,381 - EX31_RS20675 0.35 +1.0 778,393 + EX31_RS20675 0.36 -0.0 778,393 + EX31_RS20675 0.36 -0.3 778,393 + EX31_RS20675 0.36 -2.1 778,394 - EX31_RS20675 0.36 +0.5 778,394 - EX31_RS20675 0.36 -2.3 778,410 + EX31_RS20675 0.38 +1.4 778,410 + EX31_RS20675 0.38 -0.2 778,412 + EX31_RS20675 0.38 -0.3 778,412 + EX31_RS20675 0.38 -0.5 778,413 - EX31_RS20675 0.38 -0.5 778,425 + EX31_RS20675 0.39 +0.2 778,425 + EX31_RS20675 0.39 -0.0 778,426 - EX31_RS20675 0.39 -0.9 778,464 + EX31_RS20675 0.43 -0.8 778,464 + EX31_RS20675 0.43 -0.2 778,465 - EX31_RS20675 0.43 -0.3 778,516 + EX31_RS20675 0.47 -0.4 778,517 - EX31_RS20675 0.47 +1.1 778,519 - EX31_RS20675 0.48 -0.3 778,580 - EX31_RS20675 0.53 +0.6 778,627 + EX31_RS20675 0.57 +0.1 778,627 + EX31_RS20675 0.57 +0.1 778,627 + EX31_RS20675 0.57 -0.1 778,628 - EX31_RS20675 0.57 -0.7 778,628 - EX31_RS20675 0.57 -1.4 778,628 - EX31_RS20675 0.57 +1.1 778,628 - EX31_RS20675 0.57 -0.1 778,673 + EX31_RS20675 0.62 +0.8 778,673 + EX31_RS20675 0.62 +0.9 778,673 + EX31_RS20675 0.62 -0.9 778,674 - EX31_RS20675 0.62 -0.1 778,674 - EX31_RS20675 0.62 +1.6 778,674 - EX31_RS20675 0.62 -2.1 778,870 + EX31_RS20675 0.79 +0.8 778,871 - EX31_RS20675 0.79 -2.1 779,029 + -0.3 779,029 + +0.1 779,030 - -0.1 779,030 - +0.9 779,030 - +0.1 779,105 - -0.8 779,148 + +1.6 779,148 + +0.1 779,148 + +2.1 779,148 + +0.2 779,148 + +0.6 779,148 + -0.4 779,149 - -0.3 779,149 - +0.2 779,149 - +0.4 779,149 - -0.8 779,149 - -0.8 779,149 - +0.5 779,152 + -0.1 779,152 + +0.1 779,152 + +0.2 779,162 + +0.1 779,174 - +1.2 779,192 + -0.2 779,193 - -0.7 779,212 + -0.4 779,250 - -1.5 779,283 + -0.9 779,283 + -0.5 779,283 + -0.1 779,283 + -0.2 779,284 - +1.2 779,284 - +0.6 779,284 - +0.9 779,284 - +0.8 779,354 + EX31_RS20680 0.17 -0.3 779,440 + EX31_RS20680 0.29 -0.1 779,440 + EX31_RS20680 0.29 -0.5 779,440 + EX31_RS20680 0.29 +0.3 779,441 - EX31_RS20680 0.29 -0.3 779,441 - EX31_RS20680 0.29 +3.1 779,441 - EX31_RS20680 0.29 -0.3 779,441 - EX31_RS20680 0.29 -0.5 779,461 - EX31_RS20680 0.32 +0.3 779,461 - EX31_RS20680 0.32 +0.2 779,461 - EX31_RS20680 0.32 +0.1 779,537 + EX31_RS20680 0.43 -0.4 779,689 + EX31_RS20680 0.63 -0.7 779,702 - EX31_RS20680 0.65 -0.5 779,702 - EX31_RS20680 0.65 -0.5 779,718 + EX31_RS20680 0.67 +1.1 779,719 - EX31_RS20680 0.67 -0.8 779,719 - EX31_RS20680 0.67 +2.1 779,780 + EX31_RS20680 0.76 +0.7 779,781 - EX31_RS20680 0.76 +1.1 779,781 - EX31_RS20680 0.76 +0.4 779,868 + EX31_RS20680 0.88 +0.1 779,868 + EX31_RS20680 0.88 -0.0 779,872 + EX31_RS20680 0.88 +2.1 779,872 + EX31_RS20680 0.88 -0.8 779,872 + EX31_RS20680 0.88 +1.1 779,872 + EX31_RS20680 0.88 +0.4 779,872 + EX31_RS20680 0.88 -0.2 779,872 + EX31_RS20680 0.88 -0.6 779,872 + EX31_RS20680 0.88 +0.5 779,872 + EX31_RS20680 0.88 -0.9 779,873 - EX31_RS20680 0.89 -0.3 779,873 - EX31_RS20680 0.89 -1.4 779,873 - EX31_RS20680 0.89 +0.2 779,873 - EX31_RS20680 0.89 +0.5 779,873 - EX31_RS20680 0.89 -0.6 780,029 + +0.9 780,029 + +1.7 780,029 + -0.8 780,030 - -0.1 780,030 - -0.8 780,030 - +1.1 780,030 - +1.1 780,030 - +0.3 780,034 - +1.3 780,034 - +0.1 780,045 + +0.5 780,045 + -0.2 780,045 + -0.4 780,045 + -0.3 780,045 + +0.3 780,045 + +0.8 780,045 + -0.0 780,045 + -1.3 780,045 + -0.3 780,045 + -1.1 780,045 + +0.7 780,046 - -0.1 780,046 - +1.1 780,046 - +1.1 780,046 - +2.1 780,046 - +1.6 780,046 - +1.3 780,046 - +0.4 780,046 - -1.3 780,046 - +1.1 780,046 - +1.3 780,316 + +0.6 780,316 + -0.4 780,317 - +0.1 780,388 + -0.7 780,407 + +1.1 780,408 - -0.5 780,431 - -0.8 780,431 - +0.8 780,440 + +0.2 780,786 + EX31_RS20690 0.26 +0.1 780,787 - EX31_RS20690 0.26 +2.6 780,795 - EX31_RS20690 0.26 +0.1 780,934 + EX31_RS20690 0.35 +0.2 780,934 + EX31_RS20690 0.35 +0.7 780,935 - EX31_RS20690 0.35 +0.2 780,935 - EX31_RS20690 0.35 -0.3 780,937 + EX31_RS20690 0.35 +0.1 780,938 - EX31_RS20690 0.35 +1.1 780,938 - EX31_RS20690 0.35 -1.9 780,938 - EX31_RS20690 0.35 -0.1
Or see this region's nucleotide sequence