Strain Fitness in Rahnella sp. WP5 around EX31_RS20270

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20260 and EX31_RS20265 overlap by 1 nucleotidesEX31_RS20265 and EX31_RS20270 are separated by 54 nucleotidesEX31_RS20270 and EX31_RS20275 are separated by 59 nucleotides EX31_RS20260: EX31_RS20260 - oxygen-dependent coproporphyrinogen oxidase, at 679,189 to 680,172 _RS20260 EX31_RS20265: EX31_RS20265 - YaiI/YqxD family protein, at 680,172 to 680,621 _RS20265 EX31_RS20270: EX31_RS20270 - nucleoside hydrolase, at 680,676 to 681,623 _RS20270 EX31_RS20275: EX31_RS20275 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 681,683 to 683,962 _RS20275 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 679.711 kb on + strand, within EX31_RS20260at 679.720 kb on + strand, within EX31_RS20260at 679.720 kb on + strand, within EX31_RS20260at 679.741 kb on + strand, within EX31_RS20260at 679.742 kb on - strand, within EX31_RS20260at 679.742 kb on - strand, within EX31_RS20260at 679.742 kb on - strand, within EX31_RS20260at 679.837 kb on - strand, within EX31_RS20260at 679.860 kb on + strand, within EX31_RS20260at 679.871 kb on - strand, within EX31_RS20260at 679.871 kb on - strand, within EX31_RS20260at 679.893 kb on + strand, within EX31_RS20260at 679.893 kb on + strand, within EX31_RS20260at 679.893 kb on + strand, within EX31_RS20260at 679.936 kb on + strand, within EX31_RS20260at 680.102 kb on - strandat 680.147 kb on + strandat 680.147 kb on + strandat 680.147 kb on + strandat 680.213 kb on + strandat 680.315 kb on - strand, within EX31_RS20265at 680.492 kb on + strand, within EX31_RS20265at 680.594 kb on + strandat 680.594 kb on + strandat 680.595 kb on - strandat 680.595 kb on - strandat 680.595 kb on - strandat 680.595 kb on - strandat 680.647 kb on + strandat 680.648 kb on - strandat 680.653 kb on + strandat 680.653 kb on + strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.654 kb on - strandat 680.658 kb on + strandat 680.658 kb on + strandat 680.658 kb on + strandat 680.659 kb on - strandat 680.662 kb on + strandat 680.662 kb on + strandat 680.663 kb on - strandat 680.663 kb on - strandat 680.775 kb on - strand, within EX31_RS20270at 680.777 kb on + strand, within EX31_RS20270at 680.777 kb on + strand, within EX31_RS20270at 680.778 kb on - strand, within EX31_RS20270at 680.840 kb on + strand, within EX31_RS20270at 680.840 kb on + strand, within EX31_RS20270at 680.840 kb on + strand, within EX31_RS20270at 680.840 kb on + strand, within EX31_RS20270at 680.843 kb on + strand, within EX31_RS20270at 680.844 kb on - strand, within EX31_RS20270at 681.032 kb on + strand, within EX31_RS20270at 681.067 kb on + strand, within EX31_RS20270at 681.067 kb on + strand, within EX31_RS20270at 681.067 kb on + strand, within EX31_RS20270at 681.068 kb on - strand, within EX31_RS20270at 681.149 kb on + strand, within EX31_RS20270at 681.149 kb on + strand, within EX31_RS20270at 681.357 kb on + strand, within EX31_RS20270at 681.357 kb on + strand, within EX31_RS20270at 681.357 kb on + strand, within EX31_RS20270at 681.414 kb on + strand, within EX31_RS20270at 681.414 kb on + strand, within EX31_RS20270at 681.415 kb on - strand, within EX31_RS20270at 681.433 kb on + strand, within EX31_RS20270at 681.434 kb on - strand, within EX31_RS20270at 681.434 kb on - strand, within EX31_RS20270at 681.434 kb on - strand, within EX31_RS20270at 681.434 kb on - strand, within EX31_RS20270at 681.537 kb on - strandat 681.551 kb on + strandat 681.552 kb on - strandat 681.552 kb on - strandat 681.614 kb on - strandat 681.618 kb on + strandat 681.618 kb on + strandat 681.619 kb on - strandat 681.619 kb on - strandat 681.653 kb on - strandat 681.674 kb on - strandat 681.675 kb on + strandat 681.675 kb on + strandat 681.675 kb on + strandat 681.675 kb on + strandat 681.675 kb on + strandat 681.675 kb on + strandat 681.676 kb on - strandat 681.676 kb on - strandat 681.676 kb on - strandat 681.676 kb on - strandat 681.684 kb on + strandat 681.684 kb on + strandat 681.684 kb on + strandat 681.685 kb on - strandat 681.686 kb on + strandat 681.687 kb on - strandat 681.728 kb on - strandat 681.766 kb on + strandat 681.766 kb on + strandat 681.766 kb on + strandat 681.767 kb on - strandat 681.767 kb on - strandat 681.770 kb on + strandat 681.771 kb on - strandat 681.771 kb on - strandat 681.771 kb on - strandat 681.843 kb on + strandat 681.844 kb on - strandat 681.844 kb on - strandat 681.844 kb on - strandat 681.883 kb on + strandat 681.884 kb on - strandat 682.012 kb on + strand, within EX31_RS20275at 682.049 kb on - strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.167 kb on + strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.168 kb on - strand, within EX31_RS20275at 682.171 kb on + strand, within EX31_RS20275at 682.171 kb on + strand, within EX31_RS20275at 682.181 kb on - strand, within EX31_RS20275at 682.181 kb on - strand, within EX31_RS20275at 682.181 kb on - strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.234 kb on + strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.235 kb on - strand, within EX31_RS20275at 682.253 kb on + strand, within EX31_RS20275at 682.253 kb on + strand, within EX31_RS20275at 682.254 kb on - strand, within EX31_RS20275at 682.254 kb on - strand, within EX31_RS20275at 682.272 kb on + strand, within EX31_RS20275at 682.273 kb on - strand, within EX31_RS20275at 682.273 kb on - strand, within EX31_RS20275at 682.273 kb on - strand, within EX31_RS20275at 682.273 kb on - strand, within EX31_RS20275at 682.284 kb on + strand, within EX31_RS20275at 682.284 kb on + strand, within EX31_RS20275at 682.284 kb on + strand, within EX31_RS20275at 682.284 kb on + strand, within EX31_RS20275at 682.284 kb on + strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.285 kb on - strand, within EX31_RS20275at 682.419 kb on + strand, within EX31_RS20275at 682.420 kb on - strand, within EX31_RS20275at 682.420 kb on - strand, within EX31_RS20275at 682.420 kb on - strand, within EX31_RS20275at 682.420 kb on - strand, within EX31_RS20275at 682.420 kb on - strand, within EX31_RS20275at 682.423 kb on - strand, within EX31_RS20275at 682.423 kb on - strand, within EX31_RS20275at 682.434 kb on + strand, within EX31_RS20275at 682.441 kb on + strand, within EX31_RS20275at 682.442 kb on - strand, within EX31_RS20275at 682.522 kb on + strand, within EX31_RS20275at 682.599 kb on - strand, within EX31_RS20275

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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679,711 + EX31_RS20260 0.53 -0.4
679,720 + EX31_RS20260 0.54 +0.2
679,720 + EX31_RS20260 0.54 -0.1
679,741 + EX31_RS20260 0.56 +0.3
679,742 - EX31_RS20260 0.56 +1.0
679,742 - EX31_RS20260 0.56 -1.1
679,742 - EX31_RS20260 0.56 -0.2
679,837 - EX31_RS20260 0.66 +0.4
679,860 + EX31_RS20260 0.68 -0.6
679,871 - EX31_RS20260 0.69 -0.6
679,871 - EX31_RS20260 0.69 +1.5
679,893 + EX31_RS20260 0.72 +0.3
679,893 + EX31_RS20260 0.72 -0.3
679,893 + EX31_RS20260 0.72 +0.2
679,936 + EX31_RS20260 0.76 -0.4
680,102 - +0.2
680,147 + -0.9
680,147 + +0.5
680,147 + -0.5
680,213 + -0.4
680,315 - EX31_RS20265 0.32 -2.0
680,492 + EX31_RS20265 0.71 -0.6
680,594 + +0.2
680,594 + +1.4
680,595 - +1.3
680,595 - +1.0
680,595 - +0.4
680,595 - +0.4
680,647 + -0.2
680,648 - +1.6
680,653 + -0.6
680,653 + -0.6
680,654 - +2.6
680,654 - -1.0
680,654 - +0.2
680,654 - -1.0
680,654 - -0.5
680,654 - -2.4
680,654 - +1.0
680,654 - +0.4
680,658 + +1.3
680,658 + +0.9
680,658 + -1.1
680,659 - +0.0
680,662 + +0.1
680,662 + +0.3
680,663 - +0.9
680,663 - +0.2
680,775 - EX31_RS20270 0.10 +1.0
680,777 + EX31_RS20270 0.11 +0.1
680,777 + EX31_RS20270 0.11 +2.8
680,778 - EX31_RS20270 0.11 +0.4
680,840 + EX31_RS20270 0.17 +1.0
680,840 + EX31_RS20270 0.17 +0.9
680,840 + EX31_RS20270 0.17 +0.7
680,840 + EX31_RS20270 0.17 +1.4
680,843 + EX31_RS20270 0.18 -0.3
680,844 - EX31_RS20270 0.18 +0.5
681,032 + EX31_RS20270 0.38 +0.9
681,067 + EX31_RS20270 0.41 +0.4
681,067 + EX31_RS20270 0.41 -1.8
681,067 + EX31_RS20270 0.41 +0.0
681,068 - EX31_RS20270 0.41 +0.2
681,149 + EX31_RS20270 0.50 -0.4
681,149 + EX31_RS20270 0.50 -0.6
681,357 + EX31_RS20270 0.72 +0.6
681,357 + EX31_RS20270 0.72 +0.7
681,357 + EX31_RS20270 0.72 +3.0
681,414 + EX31_RS20270 0.78 +0.2
681,414 + EX31_RS20270 0.78 -0.2
681,415 - EX31_RS20270 0.78 +1.6
681,433 + EX31_RS20270 0.80 -0.5
681,434 - EX31_RS20270 0.80 +0.0
681,434 - EX31_RS20270 0.80 +0.2
681,434 - EX31_RS20270 0.80 +0.3
681,434 - EX31_RS20270 0.80 +0.3
681,537 - +0.8
681,551 + +0.6
681,552 - +1.2
681,552 - -1.0
681,614 - +0.2
681,618 + +1.5
681,618 + -0.6
681,619 - -0.3
681,619 - +0.9
681,653 - -0.7
681,674 - -0.1
681,675 + -2.4
681,675 + -0.4
681,675 + -0.8
681,675 + -1.2
681,675 + +0.7
681,675 + +0.4
681,676 - -0.1
681,676 - -0.6
681,676 - +0.0
681,676 - -0.2
681,684 + +2.2
681,684 + +1.0
681,684 + -0.7
681,685 - -1.0
681,686 + +0.6
681,687 - +1.3
681,728 - +1.7
681,766 + +2.0
681,766 + +2.0
681,766 + +0.4
681,767 - +1.3
681,767 - +0.3
681,770 + +1.6
681,771 - +1.4
681,771 - -0.4
681,771 - +1.3
681,843 + +0.0
681,844 - -1.8
681,844 - -0.0
681,844 - -1.0
681,883 + -0.6
681,884 - +1.0
682,012 + EX31_RS20275 0.14 -1.1
682,049 - EX31_RS20275 0.16 -0.1
682,167 + EX31_RS20275 0.21 -1.0
682,167 + EX31_RS20275 0.21 -0.4
682,167 + EX31_RS20275 0.21 +1.0
682,167 + EX31_RS20275 0.21 -0.3
682,167 + EX31_RS20275 0.21 +1.0
682,167 + EX31_RS20275 0.21 +1.6
682,167 + EX31_RS20275 0.21 +0.4
682,168 - EX31_RS20275 0.21 +0.2
682,168 - EX31_RS20275 0.21 -0.6
682,168 - EX31_RS20275 0.21 +0.1
682,168 - EX31_RS20275 0.21 +3.4
682,168 - EX31_RS20275 0.21 -0.2
682,168 - EX31_RS20275 0.21 -0.1
682,168 - EX31_RS20275 0.21 +0.1
682,171 + EX31_RS20275 0.21 -0.3
682,171 + EX31_RS20275 0.21 +0.4
682,181 - EX31_RS20275 0.22 +0.0
682,181 - EX31_RS20275 0.22 +1.0
682,181 - EX31_RS20275 0.22 +1.3
682,234 + EX31_RS20275 0.24 -1.0
682,234 + EX31_RS20275 0.24 -1.8
682,234 + EX31_RS20275 0.24 +0.6
682,234 + EX31_RS20275 0.24 +1.4
682,234 + EX31_RS20275 0.24 +0.0
682,234 + EX31_RS20275 0.24 +0.0
682,235 - EX31_RS20275 0.24 +0.0
682,235 - EX31_RS20275 0.24 -0.8
682,235 - EX31_RS20275 0.24 +0.4
682,235 - EX31_RS20275 0.24 -1.6
682,235 - EX31_RS20275 0.24 +0.2
682,235 - EX31_RS20275 0.24 +0.6
682,235 - EX31_RS20275 0.24 +0.0
682,253 + EX31_RS20275 0.25 -0.4
682,253 + EX31_RS20275 0.25 +0.4
682,254 - EX31_RS20275 0.25 +0.4
682,254 - EX31_RS20275 0.25 +0.0
682,272 + EX31_RS20275 0.26 -1.4
682,273 - EX31_RS20275 0.26 -0.3
682,273 - EX31_RS20275 0.26 -1.7
682,273 - EX31_RS20275 0.26 -0.1
682,273 - EX31_RS20275 0.26 +0.9
682,284 + EX31_RS20275 0.26 -0.3
682,284 + EX31_RS20275 0.26 -0.2
682,284 + EX31_RS20275 0.26 -0.1
682,284 + EX31_RS20275 0.26 +0.2
682,284 + EX31_RS20275 0.26 +1.8
682,285 - EX31_RS20275 0.26 -1.3
682,285 - EX31_RS20275 0.26 -0.7
682,285 - EX31_RS20275 0.26 -0.7
682,285 - EX31_RS20275 0.26 -1.0
682,285 - EX31_RS20275 0.26 +0.6
682,285 - EX31_RS20275 0.26 -0.1
682,285 - EX31_RS20275 0.26 +0.1
682,285 - EX31_RS20275 0.26 -1.3
682,285 - EX31_RS20275 0.26 +3.8
682,285 - EX31_RS20275 0.26 +0.8
682,285 - EX31_RS20275 0.26 +1.4
682,285 - EX31_RS20275 0.26 +0.5
682,285 - EX31_RS20275 0.26 +1.0
682,419 + EX31_RS20275 0.32 +2.0
682,420 - EX31_RS20275 0.32 -0.4
682,420 - EX31_RS20275 0.32 +0.0
682,420 - EX31_RS20275 0.32 +0.0
682,420 - EX31_RS20275 0.32 +0.5
682,420 - EX31_RS20275 0.32 -0.2
682,423 - EX31_RS20275 0.32 +0.7
682,423 - EX31_RS20275 0.32 -2.0
682,434 + EX31_RS20275 0.33 -0.1
682,441 + EX31_RS20275 0.33 -1.6
682,442 - EX31_RS20275 0.33 +0.2
682,522 + EX31_RS20275 0.37 +0.0
682,599 - EX31_RS20275 0.40 +0.4

Or see this region's nucleotide sequence