Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20260 and EX31_RS20265 overlap by 1 nucleotides EX31_RS20265 and EX31_RS20270 are separated by 54 nucleotides
EX31_RS20260: EX31_RS20260 - oxygen-dependent coproporphyrinogen oxidase, at 679,189 to 680,172
_RS20260
EX31_RS20265: EX31_RS20265 - YaiI/YqxD family protein, at 680,172 to 680,621
_RS20265
EX31_RS20270: EX31_RS20270 - nucleoside hydrolase, at 680,676 to 681,623
_RS20270
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 679.255 kb on - strand at 679.269 kb on + strand at 679.269 kb on + strand at 679.269 kb on + strand at 679.270 kb on - strand at 679.284 kb on + strand at 679.284 kb on + strand at 679.284 kb on + strand at 679.285 kb on - strand at 679.285 kb on - strand at 679.412 kb on + strand, within EX31_RS20260 at 679.413 kb on - strand, within EX31_RS20260 at 679.413 kb on - strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.534 kb on + strand, within EX31_RS20260 at 679.535 kb on - strand, within EX31_RS20260 at 679.535 kb on - strand, within EX31_RS20260 at 679.535 kb on - strand, within EX31_RS20260 at 679.535 kb on - strand, within EX31_RS20260 at 679.559 kb on + strand, within EX31_RS20260 at 679.560 kb on - strand, within EX31_RS20260 at 679.633 kb on + strand, within EX31_RS20260 at 679.633 kb on + strand, within EX31_RS20260 at 679.634 kb on - strand, within EX31_RS20260 at 679.636 kb on + strand, within EX31_RS20260 at 679.711 kb on + strand, within EX31_RS20260 at 679.720 kb on + strand, within EX31_RS20260 at 679.720 kb on + strand, within EX31_RS20260 at 679.741 kb on + strand, within EX31_RS20260 at 679.742 kb on - strand, within EX31_RS20260 at 679.742 kb on - strand, within EX31_RS20260 at 679.742 kb on - strand, within EX31_RS20260 at 679.837 kb on - strand, within EX31_RS20260 at 679.860 kb on + strand, within EX31_RS20260 at 679.871 kb on - strand, within EX31_RS20260 at 679.871 kb on - strand, within EX31_RS20260 at 679.893 kb on + strand, within EX31_RS20260 at 679.893 kb on + strand, within EX31_RS20260 at 679.893 kb on + strand, within EX31_RS20260 at 679.936 kb on + strand, within EX31_RS20260 at 680.102 kb on - strand at 680.147 kb on + strand at 680.147 kb on + strand at 680.147 kb on + strand at 680.213 kb on + strand at 680.315 kb on - strand, within EX31_RS20265 at 680.492 kb on + strand, within EX31_RS20265 at 680.594 kb on + strand at 680.594 kb on + strand at 680.595 kb on - strand at 680.595 kb on - strand at 680.595 kb on - strand at 680.595 kb on - strand at 680.647 kb on + strand at 680.648 kb on - strand at 680.653 kb on + strand at 680.653 kb on + strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.654 kb on - strand at 680.658 kb on + strand at 680.658 kb on + strand at 680.658 kb on + strand at 680.659 kb on - strand at 680.662 kb on + strand at 680.662 kb on + strand at 680.663 kb on - strand at 680.663 kb on - strand at 680.775 kb on - strand, within EX31_RS20270 at 680.777 kb on + strand, within EX31_RS20270 at 680.777 kb on + strand, within EX31_RS20270 at 680.778 kb on - strand, within EX31_RS20270 at 680.840 kb on + strand, within EX31_RS20270 at 680.840 kb on + strand, within EX31_RS20270 at 680.840 kb on + strand, within EX31_RS20270 at 680.840 kb on + strand, within EX31_RS20270 at 680.843 kb on + strand, within EX31_RS20270 at 680.844 kb on - strand, within EX31_RS20270 at 681.032 kb on + strand, within EX31_RS20270 at 681.067 kb on + strand, within EX31_RS20270 at 681.067 kb on + strand, within EX31_RS20270 at 681.067 kb on + strand, within EX31_RS20270 at 681.068 kb on - strand, within EX31_RS20270 at 681.149 kb on + strand, within EX31_RS20270 at 681.149 kb on + strand, within EX31_RS20270 at 681.357 kb on + strand, within EX31_RS20270 at 681.357 kb on + strand, within EX31_RS20270 at 681.357 kb on + strand, within EX31_RS20270 at 681.414 kb on + strand, within EX31_RS20270 at 681.414 kb on + strand, within EX31_RS20270 at 681.415 kb on - strand, within EX31_RS20270 at 681.433 kb on + strand, within EX31_RS20270 at 681.434 kb on - strand, within EX31_RS20270 at 681.434 kb on - strand, within EX31_RS20270 at 681.434 kb on - strand, within EX31_RS20270 at 681.434 kb on - strand, within EX31_RS20270 at 681.537 kb on - strand at 681.551 kb on + strand at 681.552 kb on - strand at 681.552 kb on - strand at 681.614 kb on - strand at 681.618 kb on + strand at 681.618 kb on + strand at 681.619 kb on - strand at 681.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 679,255 - -0.3 679,269 + -0.6 679,269 + +0.0 679,269 + +0.2 679,270 - -1.0 679,284 + -2.3 679,284 + +0.8 679,284 + +0.0 679,285 - -0.8 679,285 - +2.3 679,412 + EX31_RS20260 0.23 +0.6 679,413 - EX31_RS20260 0.23 +0.0 679,413 - EX31_RS20260 0.23 +0.4 679,534 + EX31_RS20260 0.35 -0.2 679,534 + EX31_RS20260 0.35 -1.0 679,534 + EX31_RS20260 0.35 -0.4 679,534 + EX31_RS20260 0.35 +1.4 679,534 + EX31_RS20260 0.35 +0.5 679,534 + EX31_RS20260 0.35 +0.3 679,534 + EX31_RS20260 0.35 +0.1 679,534 + EX31_RS20260 0.35 +0.4 679,535 - EX31_RS20260 0.35 +0.0 679,535 - EX31_RS20260 0.35 -0.3 679,535 - EX31_RS20260 0.35 +1.4 679,535 - EX31_RS20260 0.35 -2.3 679,559 + EX31_RS20260 0.38 +0.4 679,560 - EX31_RS20260 0.38 -0.3 679,633 + EX31_RS20260 0.45 +0.9 679,633 + EX31_RS20260 0.45 -0.6 679,634 - EX31_RS20260 0.45 -0.8 679,636 + EX31_RS20260 0.45 -0.2 679,711 + EX31_RS20260 0.53 -0.4 679,720 + EX31_RS20260 0.54 +0.2 679,720 + EX31_RS20260 0.54 -0.1 679,741 + EX31_RS20260 0.56 +0.3 679,742 - EX31_RS20260 0.56 +1.0 679,742 - EX31_RS20260 0.56 -1.1 679,742 - EX31_RS20260 0.56 -0.2 679,837 - EX31_RS20260 0.66 +0.4 679,860 + EX31_RS20260 0.68 -0.6 679,871 - EX31_RS20260 0.69 -0.6 679,871 - EX31_RS20260 0.69 +1.5 679,893 + EX31_RS20260 0.72 +0.3 679,893 + EX31_RS20260 0.72 -0.3 679,893 + EX31_RS20260 0.72 +0.2 679,936 + EX31_RS20260 0.76 -0.4 680,102 - +0.2 680,147 + -0.9 680,147 + +0.5 680,147 + -0.5 680,213 + -0.4 680,315 - EX31_RS20265 0.32 -2.0 680,492 + EX31_RS20265 0.71 -0.6 680,594 + +0.2 680,594 + +1.4 680,595 - +1.3 680,595 - +1.0 680,595 - +0.4 680,595 - +0.4 680,647 + -0.2 680,648 - +1.6 680,653 + -0.6 680,653 + -0.6 680,654 - +2.6 680,654 - -1.0 680,654 - +0.2 680,654 - -1.0 680,654 - -0.5 680,654 - -2.4 680,654 - +1.0 680,654 - +0.4 680,658 + +1.3 680,658 + +0.9 680,658 + -1.1 680,659 - +0.0 680,662 + +0.1 680,662 + +0.3 680,663 - +0.9 680,663 - +0.2 680,775 - EX31_RS20270 0.10 +1.0 680,777 + EX31_RS20270 0.11 +0.1 680,777 + EX31_RS20270 0.11 +2.8 680,778 - EX31_RS20270 0.11 +0.4 680,840 + EX31_RS20270 0.17 +1.0 680,840 + EX31_RS20270 0.17 +0.9 680,840 + EX31_RS20270 0.17 +0.7 680,840 + EX31_RS20270 0.17 +1.4 680,843 + EX31_RS20270 0.18 -0.3 680,844 - EX31_RS20270 0.18 +0.5 681,032 + EX31_RS20270 0.38 +0.9 681,067 + EX31_RS20270 0.41 +0.4 681,067 + EX31_RS20270 0.41 -1.8 681,067 + EX31_RS20270 0.41 +0.0 681,068 - EX31_RS20270 0.41 +0.2 681,149 + EX31_RS20270 0.50 -0.4 681,149 + EX31_RS20270 0.50 -0.6 681,357 + EX31_RS20270 0.72 +0.6 681,357 + EX31_RS20270 0.72 +0.7 681,357 + EX31_RS20270 0.72 +3.0 681,414 + EX31_RS20270 0.78 +0.2 681,414 + EX31_RS20270 0.78 -0.2 681,415 - EX31_RS20270 0.78 +1.6 681,433 + EX31_RS20270 0.80 -0.5 681,434 - EX31_RS20270 0.80 +0.0 681,434 - EX31_RS20270 0.80 +0.2 681,434 - EX31_RS20270 0.80 +0.3 681,434 - EX31_RS20270 0.80 +0.3 681,537 - +0.8 681,551 + +0.6 681,552 - +1.2 681,552 - -1.0 681,614 - +0.2 681,618 + +1.5 681,618 + -0.6 681,619 - -0.3 681,619 - +0.9
Or see this region's nucleotide sequence