Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20175 and EX31_RS20180 are separated by 403 nucleotides EX31_RS20180 and EX31_RS20185 are separated by 50 nucleotides EX31_RS20185 and EX31_RS20190 are separated by 48 nucleotides EX31_RS20190 and EX31_RS20195 are separated by 56 nucleotides
EX31_RS20175: EX31_RS20175 - cysteine synthase A, at 663,437 to 664,402
_RS20175
EX31_RS20180: EX31_RS20180 - phosphocarrier protein Hpr, at 664,806 to 665,063
_RS20180
EX31_RS20185: EX31_RS20185 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 665,114 to 666,841
_RS20185
EX31_RS20190: EX31_RS20190 - PTS glucose transporter subunit IIA, at 666,890 to 667,399
_RS20190
EX31_RS20195: EX31_RS20195 - HAMP domain-containing protein, at 667,456 to 668,805
_RS20195
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 664.132 kb on + strand, within EX31_RS20175 at 664.176 kb on + strand, within EX31_RS20175 at 664.374 kb on + strand at 664.375 kb on - strand at 664.400 kb on + strand at 664.400 kb on + strand at 664.400 kb on + strand at 664.414 kb on + strand at 664.415 kb on - strand at 664.471 kb on + strand at 664.471 kb on + strand at 664.471 kb on + strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.506 kb on + strand at 664.507 kb on - strand at 664.507 kb on - strand at 664.510 kb on - strand at 664.510 kb on - strand at 664.513 kb on + strand at 664.514 kb on - strand at 664.612 kb on + strand at 664.612 kb on + strand at 664.613 kb on - strand at 664.623 kb on + strand at 664.624 kb on - strand at 664.624 kb on - strand at 664.734 kb on - strand at 664.740 kb on + strand at 664.741 kb on - strand at 664.754 kb on + strand at 664.755 kb on - strand at 664.759 kb on + strand at 664.766 kb on + strand at 664.766 kb on + strand at 664.766 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.780 kb on + strand at 664.781 kb on - strand at 664.781 kb on - strand at 664.781 kb on - strand at 664.781 kb on - strand at 664.785 kb on + strand at 664.785 kb on + strand at 664.785 kb on + strand at 664.785 kb on + strand at 664.786 kb on - strand at 664.788 kb on + strand at 664.788 kb on + strand at 664.788 kb on + strand at 664.789 kb on - strand at 664.789 kb on - strand at 664.789 kb on - strand at 664.823 kb on + strand at 664.823 kb on + strand at 664.823 kb on + strand at 664.823 kb on + strand at 664.826 kb on + strand at 664.826 kb on + strand at 664.826 kb on + strand at 664.826 kb on + strand at 664.829 kb on + strand at 664.838 kb on + strand, within EX31_RS20180 at 664.838 kb on + strand, within EX31_RS20180 at 664.937 kb on + strand, within EX31_RS20180 at 664.937 kb on + strand, within EX31_RS20180 at 665.038 kb on + strand at 665.061 kb on + strand at 665.061 kb on + strand at 665.065 kb on - strand at 665.065 kb on - strand at 665.078 kb on + strand at 665.078 kb on + strand at 665.078 kb on + strand at 665.081 kb on - strand at 665.107 kb on + strand at 665.107 kb on + strand at 665.107 kb on + strand at 665.113 kb on + strand at 665.382 kb on + strand, within EX31_RS20185 at 665.581 kb on + strand, within EX31_RS20185 at 665.650 kb on + strand, within EX31_RS20185 at 665.671 kb on + strand, within EX31_RS20185 at 665.672 kb on - strand, within EX31_RS20185 at 665.762 kb on + strand, within EX31_RS20185 at 665.762 kb on + strand, within EX31_RS20185 at 665.762 kb on + strand, within EX31_RS20185 at 665.763 kb on - strand, within EX31_RS20185 at 665.782 kb on + strand, within EX31_RS20185 at 665.795 kb on + strand, within EX31_RS20185 at 665.849 kb on + strand, within EX31_RS20185 at 665.849 kb on + strand, within EX31_RS20185 at 666.062 kb on + strand, within EX31_RS20185 at 666.062 kb on + strand, within EX31_RS20185 at 666.064 kb on + strand, within EX31_RS20185 at 666.105 kb on + strand, within EX31_RS20185 at 666.105 kb on + strand, within EX31_RS20185 at 666.143 kb on + strand, within EX31_RS20185 at 666.143 kb on + strand, within EX31_RS20185 at 666.144 kb on - strand, within EX31_RS20185 at 666.196 kb on + strand, within EX31_RS20185 at 666.490 kb on + strand, within EX31_RS20185 at 666.490 kb on + strand, within EX31_RS20185 at 666.490 kb on + strand, within EX31_RS20185 at 666.491 kb on - strand, within EX31_RS20185 at 666.533 kb on + strand, within EX31_RS20185 at 666.533 kb on + strand, within EX31_RS20185 at 666.555 kb on + strand, within EX31_RS20185 at 666.568 kb on + strand, within EX31_RS20185 at 666.568 kb on + strand, within EX31_RS20185 at 666.578 kb on - strand, within EX31_RS20185 at 666.646 kb on + strand, within EX31_RS20185 at 666.646 kb on + strand, within EX31_RS20185 at 666.646 kb on + strand, within EX31_RS20185 at 666.657 kb on + strand, within EX31_RS20185 at 666.672 kb on + strand at 666.694 kb on + strand at 666.694 kb on + strand at 666.781 kb on + strand at 666.839 kb on + strand at 666.856 kb on + strand at 666.856 kb on + strand at 666.871 kb on + strand at 666.878 kb on + strand at 666.949 kb on + strand, within EX31_RS20190 at 667.045 kb on + strand, within EX31_RS20190 at 667.046 kb on - strand, within EX31_RS20190 at 667.315 kb on + strand, within EX31_RS20190 at 667.354 kb on + strand at 667.397 kb on + strand at 667.397 kb on + strand at 667.397 kb on + strand at 667.397 kb on + strand at 667.416 kb on + strand at 667.416 kb on + strand at 667.416 kb on + strand at 667.522 kb on + strand at 667.522 kb on + strand at 667.523 kb on - strand at 667.523 kb on - strand at 667.523 kb on - strand at 667.523 kb on - strand at 667.523 kb on - strand at 667.523 kb on - strand at 667.627 kb on - strand, within EX31_RS20195 at 667.639 kb on - strand, within EX31_RS20195 at 667.639 kb on - strand, within EX31_RS20195 at 667.639 kb on - strand, within EX31_RS20195 at 667.639 kb on - strand, within EX31_RS20195 at 667.639 kb on - strand, within EX31_RS20195 at 667.686 kb on - strand, within EX31_RS20195 at 667.686 kb on - strand, within EX31_RS20195 at 667.686 kb on - strand, within EX31_RS20195 at 667.686 kb on - strand, within EX31_RS20195 at 667.686 kb on - strand, within EX31_RS20195 at 667.716 kb on + strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.717 kb on - strand, within EX31_RS20195 at 667.749 kb on + strand, within EX31_RS20195 at 667.749 kb on + strand, within EX31_RS20195 at 667.750 kb on - strand, within EX31_RS20195 at 667.791 kb on + strand, within EX31_RS20195 at 667.792 kb on - strand, within EX31_RS20195 at 667.805 kb on + strand, within EX31_RS20195 at 667.806 kb on - strand, within EX31_RS20195 at 667.806 kb on - strand, within EX31_RS20195 at 667.812 kb on + strand, within EX31_RS20195 at 667.812 kb on + strand, within EX31_RS20195 at 667.812 kb on + strand, within EX31_RS20195 at 667.813 kb on - strand, within EX31_RS20195 at 667.813 kb on - strand, within EX31_RS20195
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 664,132 + EX31_RS20175 0.72 -0.5 664,176 + EX31_RS20175 0.77 -1.2 664,374 + +0.8 664,375 - +0.0 664,400 + -0.2 664,400 + +0.4 664,400 + -0.2 664,414 + +0.1 664,415 - +0.7 664,471 + -0.8 664,471 + +2.3 664,471 + -0.6 664,472 - +0.1 664,472 - +0.4 664,472 - -0.2 664,472 - +0.3 664,506 + -0.6 664,507 - +0.4 664,507 - +1.4 664,510 - +0.1 664,510 - -1.1 664,513 + -0.7 664,514 - +0.0 664,612 + +1.4 664,612 + +0.3 664,613 - -0.2 664,623 + +0.2 664,624 - -1.0 664,624 - +0.5 664,734 - +0.0 664,740 + -2.1 664,741 - +0.4 664,754 + +1.6 664,755 - -0.9 664,759 + +0.7 664,766 + +0.2 664,766 + +1.8 664,766 + +0.0 664,780 + +0.5 664,780 + +2.0 664,780 + -0.2 664,780 + -0.4 664,780 + -1.8 664,780 + +0.6 664,780 + -1.8 664,780 + +1.4 664,780 + +1.4 664,780 + +0.4 664,781 - +1.0 664,781 - +0.3 664,781 - +1.8 664,781 - -0.6 664,785 + +0.0 664,785 + -0.1 664,785 + +0.8 664,785 + +0.0 664,786 - +1.3 664,788 + -0.2 664,788 + +1.4 664,788 + -0.9 664,789 - -1.6 664,789 - +1.0 664,789 - -0.7 664,823 + +0.8 664,823 + +0.4 664,823 + +1.2 664,823 + -0.3 664,826 + +0.0 664,826 + +0.2 664,826 + -0.9 664,826 + +1.8 664,829 + +3.6 664,838 + EX31_RS20180 0.12 -0.1 664,838 + EX31_RS20180 0.12 -1.8 664,937 + EX31_RS20180 0.51 +0.9 664,937 + EX31_RS20180 0.51 +1.3 665,038 + +0.4 665,061 + -0.1 665,061 + +0.6 665,065 - -1.6 665,065 - -0.6 665,078 + +0.9 665,078 + -0.6 665,078 + -0.0 665,081 - -1.2 665,107 + +0.6 665,107 + +0.8 665,107 + +1.3 665,113 + -0.4 665,382 + EX31_RS20185 0.16 -2.5 665,581 + EX31_RS20185 0.27 -1.9 665,650 + EX31_RS20185 0.31 +0.0 665,671 + EX31_RS20185 0.32 -0.2 665,672 - EX31_RS20185 0.32 -0.3 665,762 + EX31_RS20185 0.38 -2.4 665,762 + EX31_RS20185 0.38 +0.6 665,762 + EX31_RS20185 0.38 +1.0 665,763 - EX31_RS20185 0.38 -0.6 665,782 + EX31_RS20185 0.39 +0.9 665,795 + EX31_RS20185 0.39 -1.3 665,849 + EX31_RS20185 0.43 -1.3 665,849 + EX31_RS20185 0.43 -2.0 666,062 + EX31_RS20185 0.55 -1.6 666,062 + EX31_RS20185 0.55 +2.6 666,064 + EX31_RS20185 0.55 -0.6 666,105 + EX31_RS20185 0.57 -1.0 666,105 + EX31_RS20185 0.57 +2.7 666,143 + EX31_RS20185 0.60 -0.1 666,143 + EX31_RS20185 0.60 -1.0 666,144 - EX31_RS20185 0.60 -1.8 666,196 + EX31_RS20185 0.63 -0.8 666,490 + EX31_RS20185 0.80 -1.0 666,490 + EX31_RS20185 0.80 -0.3 666,490 + EX31_RS20185 0.80 -0.1 666,491 - EX31_RS20185 0.80 +1.0 666,533 + EX31_RS20185 0.82 -0.8 666,533 + EX31_RS20185 0.82 -1.7 666,555 + EX31_RS20185 0.83 -0.9 666,568 + EX31_RS20185 0.84 -1.3 666,568 + EX31_RS20185 0.84 -1.0 666,578 - EX31_RS20185 0.85 +2.6 666,646 + EX31_RS20185 0.89 -1.2 666,646 + EX31_RS20185 0.89 -1.8 666,646 + EX31_RS20185 0.89 -1.3 666,657 + EX31_RS20185 0.89 +0.0 666,672 + -1.8 666,694 + +1.0 666,694 + -0.5 666,781 + -0.1 666,839 + +1.3 666,856 + +0.8 666,856 + +0.6 666,871 + +0.5 666,878 + +0.5 666,949 + EX31_RS20190 0.12 -0.3 667,045 + EX31_RS20190 0.30 -1.0 667,046 - EX31_RS20190 0.31 +1.0 667,315 + EX31_RS20190 0.83 -2.0 667,354 + -0.6 667,397 + +0.6 667,397 + -0.6 667,397 + +0.4 667,397 + +0.5 667,416 + -0.6 667,416 + -0.4 667,416 + +1.4 667,522 + +0.8 667,522 + +0.0 667,523 - -0.6 667,523 - -0.6 667,523 - -0.2 667,523 - -0.4 667,523 - +0.1 667,523 - +0.4 667,627 - EX31_RS20195 0.13 +0.3 667,639 - EX31_RS20195 0.14 -0.9 667,639 - EX31_RS20195 0.14 +1.0 667,639 - EX31_RS20195 0.14 +0.8 667,639 - EX31_RS20195 0.14 +0.0 667,639 - EX31_RS20195 0.14 -0.5 667,686 - EX31_RS20195 0.17 -1.8 667,686 - EX31_RS20195 0.17 +0.6 667,686 - EX31_RS20195 0.17 +1.0 667,686 - EX31_RS20195 0.17 +1.0 667,686 - EX31_RS20195 0.17 +0.4 667,716 + EX31_RS20195 0.19 +3.0 667,717 - EX31_RS20195 0.19 +1.5 667,717 - EX31_RS20195 0.19 -1.4 667,717 - EX31_RS20195 0.19 -2.1 667,717 - EX31_RS20195 0.19 -0.2 667,717 - EX31_RS20195 0.19 +0.3 667,717 - EX31_RS20195 0.19 +0.8 667,749 + EX31_RS20195 0.22 +1.2 667,749 + EX31_RS20195 0.22 +0.9 667,750 - EX31_RS20195 0.22 +1.2 667,791 + EX31_RS20195 0.25 -1.6 667,792 - EX31_RS20195 0.25 +0.8 667,805 + EX31_RS20195 0.26 +2.0 667,806 - EX31_RS20195 0.26 +0.2 667,806 - EX31_RS20195 0.26 -0.7 667,812 + EX31_RS20195 0.26 -1.0 667,812 + EX31_RS20195 0.26 -0.1 667,812 + EX31_RS20195 0.26 -2.1 667,813 - EX31_RS20195 0.26 -2.1 667,813 - EX31_RS20195 0.26 -0.3
Or see this region's nucleotide sequence