Strain Fitness in Rahnella sp. WP5 around EX31_RS19385

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19380 and EX31_RS19385 are separated by 97 nucleotidesEX31_RS19385 and EX31_RS19390 overlap by 4 nucleotidesEX31_RS19390 and EX31_RS19395 overlap by 4 nucleotidesEX31_RS19395 and EX31_RS19400 are separated by 12 nucleotides EX31_RS19380: EX31_RS19380 - NADH-quinone oxidoreductase subunit M, at 502,624 to 504,153 _RS19380 EX31_RS19385: EX31_RS19385 - NADH-quinone oxidoreductase subunit L, at 504,251 to 506,098 _RS19385 EX31_RS19390: EX31_RS19390 - NADH-quinone oxidoreductase subunit NuoK, at 506,095 to 506,397 _RS19390 EX31_RS19395: EX31_RS19395 - NADH-quinone oxidoreductase subunit J, at 506,394 to 506,954 _RS19395 EX31_RS19400: EX31_RS19400 - NADH-quinone oxidoreductase subunit NuoI, at 506,967 to 507,509 _RS19400 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 503.256 kb on - strand, within EX31_RS19380at 503.256 kb on - strand, within EX31_RS19380at 503.263 kb on - strand, within EX31_RS19380at 503.493 kb on - strand, within EX31_RS19380at 503.535 kb on - strand, within EX31_RS19380at 503.564 kb on + strand, within EX31_RS19380at 503.565 kb on - strand, within EX31_RS19380at 503.565 kb on - strand, within EX31_RS19380at 503.565 kb on - strand, within EX31_RS19380at 503.622 kb on + strand, within EX31_RS19380at 503.623 kb on - strand, within EX31_RS19380at 503.624 kb on + strand, within EX31_RS19380at 503.625 kb on - strand, within EX31_RS19380at 503.625 kb on - strand, within EX31_RS19380at 503.625 kb on - strand, within EX31_RS19380at 503.625 kb on - strand, within EX31_RS19380at 503.652 kb on + strand, within EX31_RS19380at 503.662 kb on - strand, within EX31_RS19380at 503.703 kb on - strand, within EX31_RS19380at 504.074 kb on - strandat 504.130 kb on - strandat 504.133 kb on + strandat 504.134 kb on - strandat 504.149 kb on - strandat 504.149 kb on - strandat 504.175 kb on - strandat 504.188 kb on - strandat 504.188 kb on - strandat 504.188 kb on - strandat 504.229 kb on + strandat 504.230 kb on - strandat 504.230 kb on - strandat 504.233 kb on + strandat 504.233 kb on + strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.234 kb on - strandat 504.241 kb on + strandat 504.242 kb on - strandat 504.242 kb on - strandat 504.242 kb on - strandat 504.242 kb on - strandat 504.252 kb on + strandat 504.310 kb on - strandat 504.310 kb on - strandat 504.456 kb on + strand, within EX31_RS19385at 504.556 kb on - strand, within EX31_RS19385at 504.711 kb on - strand, within EX31_RS19385at 504.963 kb on + strand, within EX31_RS19385at 504.963 kb on + strand, within EX31_RS19385at 504.983 kb on - strand, within EX31_RS19385at 504.987 kb on - strand, within EX31_RS19385at 505.138 kb on - strand, within EX31_RS19385at 505.235 kb on - strand, within EX31_RS19385at 505.300 kb on - strand, within EX31_RS19385at 505.617 kb on + strand, within EX31_RS19385at 505.618 kb on - strand, within EX31_RS19385at 505.639 kb on - strand, within EX31_RS19385at 505.671 kb on + strand, within EX31_RS19385at 505.671 kb on + strand, within EX31_RS19385at 505.672 kb on - strand, within EX31_RS19385at 505.672 kb on - strand, within EX31_RS19385at 505.773 kb on + strand, within EX31_RS19385at 505.773 kb on + strand, within EX31_RS19385at 505.774 kb on - strand, within EX31_RS19385at 505.959 kb on + strandat 505.960 kb on - strandat 505.963 kb on + strandat 505.963 kb on + strandat 505.964 kb on - strandat 506.085 kb on + strandat 506.085 kb on + strandat 506.086 kb on - strandat 506.119 kb on - strandat 506.212 kb on - strand, within EX31_RS19390at 506.213 kb on + strand, within EX31_RS19390at 506.213 kb on + strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.214 kb on - strand, within EX31_RS19390at 506.243 kb on + strand, within EX31_RS19390at 506.244 kb on - strand, within EX31_RS19390at 506.244 kb on - strand, within EX31_RS19390at 506.308 kb on - strand, within EX31_RS19390at 506.308 kb on - strand, within EX31_RS19390at 506.745 kb on + strand, within EX31_RS19395at 506.766 kb on - strand, within EX31_RS19395at 506.781 kb on + strand, within EX31_RS19395at 506.782 kb on - strand, within EX31_RS19395at 506.810 kb on - strand, within EX31_RS19395at 506.863 kb on + strand, within EX31_RS19395at 506.863 kb on + strand, within EX31_RS19395at 506.864 kb on - strand, within EX31_RS19395at 506.937 kb on - strandat 506.938 kb on + strandat 506.939 kb on - strandat 507.068 kb on - strand, within EX31_RS19400

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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503,256 - EX31_RS19380 0.41 +0.9
503,256 - EX31_RS19380 0.41 -1.4
503,263 - EX31_RS19380 0.42 -2.4
503,493 - EX31_RS19380 0.57 -0.6
503,535 - EX31_RS19380 0.60 +0.9
503,564 + EX31_RS19380 0.61 -0.6
503,565 - EX31_RS19380 0.62 -1.4
503,565 - EX31_RS19380 0.62 -1.9
503,565 - EX31_RS19380 0.62 +0.5
503,622 + EX31_RS19380 0.65 -2.4
503,623 - EX31_RS19380 0.65 -0.1
503,624 + EX31_RS19380 0.65 +0.9
503,625 - EX31_RS19380 0.65 +0.9
503,625 - EX31_RS19380 0.65 -0.9
503,625 - EX31_RS19380 0.65 -1.4
503,625 - EX31_RS19380 0.65 -0.6
503,652 + EX31_RS19380 0.67 -1.1
503,662 - EX31_RS19380 0.68 +0.9
503,703 - EX31_RS19380 0.71 +0.9
504,074 - -1.4
504,130 - -0.1
504,133 + -0.1
504,134 - -1.4
504,149 - -0.1
504,149 - +1.9
504,175 - +0.2
504,188 - +0.6
504,188 - -0.1
504,188 - +0.4
504,229 + -0.1
504,230 - +0.5
504,230 - +1.2
504,233 + +0.9
504,233 + -0.1
504,234 - -0.4
504,234 - -1.5
504,234 - +0.6
504,234 - +0.8
504,234 - -0.6
504,234 - +0.4
504,234 - +1.5
504,234 - +0.0
504,234 - -0.2
504,234 - -0.8
504,241 + -0.9
504,242 - +0.7
504,242 - -0.1
504,242 - -0.1
504,242 - +0.5
504,252 + -1.6
504,310 - -1.1
504,310 - +0.5
504,456 + EX31_RS19385 0.11 -2.2
504,556 - EX31_RS19385 0.17 +0.2
504,711 - EX31_RS19385 0.25 -0.1
504,963 + EX31_RS19385 0.39 +1.5
504,963 + EX31_RS19385 0.39 -0.1
504,983 - EX31_RS19385 0.40 +2.5
504,987 - EX31_RS19385 0.40 +0.4
505,138 - EX31_RS19385 0.48 -0.1
505,235 - EX31_RS19385 0.53 -1.6
505,300 - EX31_RS19385 0.57 +0.9
505,617 + EX31_RS19385 0.74 -1.1
505,618 - EX31_RS19385 0.74 -0.1
505,639 - EX31_RS19385 0.75 -0.4
505,671 + EX31_RS19385 0.77 -1.4
505,671 + EX31_RS19385 0.77 -1.1
505,672 - EX31_RS19385 0.77 -0.1
505,672 - EX31_RS19385 0.77 -0.1
505,773 + EX31_RS19385 0.82 +1.0
505,773 + EX31_RS19385 0.82 -1.5
505,774 - EX31_RS19385 0.82 -2.0
505,959 + -0.4
505,960 - -1.0
505,963 + -1.4
505,963 + -1.9
505,964 - -1.0
506,085 + -0.0
506,085 + +1.0
506,086 - -0.6
506,119 - -1.4
506,212 - EX31_RS19390 0.39 -1.6
506,213 + EX31_RS19390 0.39 -1.4
506,213 + EX31_RS19390 0.39 -1.9
506,214 - EX31_RS19390 0.39 -1.0
506,214 - EX31_RS19390 0.39 -0.6
506,214 - EX31_RS19390 0.39 -1.0
506,214 - EX31_RS19390 0.39 -0.6
506,214 - EX31_RS19390 0.39 +1.0
506,214 - EX31_RS19390 0.39 -0.2
506,243 + EX31_RS19390 0.49 +1.5
506,244 - EX31_RS19390 0.49 -1.0
506,244 - EX31_RS19390 0.49 -1.9
506,308 - EX31_RS19390 0.70 -1.0
506,308 - EX31_RS19390 0.70 -2.7
506,745 + EX31_RS19395 0.63 +0.4
506,766 - EX31_RS19395 0.66 +2.0
506,781 + EX31_RS19395 0.69 -1.0
506,782 - EX31_RS19395 0.69 -0.5
506,810 - EX31_RS19395 0.74 -1.3
506,863 + EX31_RS19395 0.84 -1.0
506,863 + EX31_RS19395 0.84 -0.0
506,864 - EX31_RS19395 0.84 +1.0
506,937 - -1.6
506,938 + +0.4
506,939 - -2.2
507,068 - EX31_RS19400 0.19 -0.5

Or see this region's nucleotide sequence