Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19365 and EX31_RS19370 are separated by 112 nucleotides EX31_RS19370 and EX31_RS19375 are separated by 192 nucleotides EX31_RS19375 and EX31_RS19380 are separated by 6 nucleotides
EX31_RS19365: EX31_RS19365 - stress response protein ElaB, at 500,028 to 500,336
_RS19365
EX31_RS19370: EX31_RS19370 - DUF1097 domain-containing protein, at 500,449 to 500,964
_RS19370
EX31_RS19375: EX31_RS19375 - NADH-quinone oxidoreductase subunit NuoN, at 501,157 to 502,617
_RS19375
EX31_RS19380: EX31_RS19380 - NADH-quinone oxidoreductase subunit M, at 502,624 to 504,153
_RS19380
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 500.172 kb on - strand, within EX31_RS19365 at 500.225 kb on - strand, within EX31_RS19365 at 500.225 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.290 kb on - strand, within EX31_RS19365 at 500.348 kb on + strand at 500.372 kb on - strand at 500.372 kb on - strand at 500.372 kb on - strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.405 kb on - strand at 500.405 kb on - strand at 500.427 kb on - strand at 500.427 kb on - strand at 500.588 kb on - strand, within EX31_RS19370 at 500.640 kb on + strand, within EX31_RS19370 at 500.653 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.685 kb on + strand, within EX31_RS19370 at 500.686 kb on - strand, within EX31_RS19370 at 500.782 kb on + strand, within EX31_RS19370 at 500.783 kb on - strand, within EX31_RS19370 at 500.783 kb on - strand, within EX31_RS19370 at 500.850 kb on - strand, within EX31_RS19370 at 500.881 kb on + strand, within EX31_RS19370 at 500.895 kb on + strand, within EX31_RS19370 at 500.896 kb on - strand, within EX31_RS19370 at 500.953 kb on + strand at 500.977 kb on + strand at 500.977 kb on + strand at 500.977 kb on + strand at 500.978 kb on - strand at 500.978 kb on - strand at 500.978 kb on - strand at 500.980 kb on + strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 500.981 kb on - strand at 501.002 kb on + strand at 501.002 kb on + strand at 501.002 kb on + strand at 501.003 kb on - strand at 501.053 kb on - strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.066 kb on + strand at 501.067 kb on - strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.070 kb on + strand at 501.071 kb on - strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.072 kb on + strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.073 kb on - strand at 501.104 kb on + strand at 501.105 kb on - strand at 501.105 kb on - strand at 501.105 kb on - strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.147 kb on + strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.148 kb on - strand at 501.211 kb on - strand at 501.318 kb on - strand, within EX31_RS19375 at 501.342 kb on - strand, within EX31_RS19375 at 501.344 kb on + strand, within EX31_RS19375 at 501.345 kb on - strand, within EX31_RS19375 at 501.511 kb on - strand, within EX31_RS19375 at 501.630 kb on - strand, within EX31_RS19375 at 501.630 kb on - strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.631 kb on + strand, within EX31_RS19375 at 501.632 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.302 kb on - strand, within EX31_RS19375 at 502.391 kb on + strand, within EX31_RS19375 at 502.391 kb on + strand, within EX31_RS19375 at 502.392 kb on - strand, within EX31_RS19375 at 502.457 kb on + strand, within EX31_RS19375 at 502.458 kb on - strand, within EX31_RS19375 at 502.460 kb on + strand, within EX31_RS19375 at 502.586 kb on - strand at 502.608 kb on + strand at 502.608 kb on + strand at 502.744 kb on + strand at 502.745 kb on - strand at 502.745 kb on - strand at 502.745 kb on - strand at 502.851 kb on - strand, within EX31_RS19380 at 502.947 kb on + strand, within EX31_RS19380 at 502.948 kb on - strand, within EX31_RS19380 at 502.948 kb on - strand, within EX31_RS19380 at 503.043 kb on + strand, within EX31_RS19380 at 503.069 kb on - strand, within EX31_RS19380 at 503.091 kb on + strand, within EX31_RS19380 at 503.162 kb on + strand, within EX31_RS19380 at 503.221 kb on - strand, within EX31_RS19380 at 503.221 kb on - strand, within EX31_RS19380 at 503.256 kb on - strand, within EX31_RS19380 at 503.256 kb on - strand, within EX31_RS19380 at 503.263 kb on - strand, within EX31_RS19380 at 503.493 kb on - strand, within EX31_RS19380 at 503.535 kb on - strand, within EX31_RS19380 at 503.564 kb on + strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380 at 503.565 kb on - strand, within EX31_RS19380
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 500,172 - EX31_RS19365 0.47 -0.7 500,225 - EX31_RS19365 0.64 -1.1 500,225 - EX31_RS19365 0.64 -0.9 500,290 - EX31_RS19365 0.85 +1.4 500,290 - EX31_RS19365 0.85 +0.4 500,290 - EX31_RS19365 0.85 -0.7 500,348 + -0.5 500,372 - +0.9 500,372 - +0.9 500,372 - +0.0 500,393 + -0.1 500,393 + +0.9 500,393 + +1.9 500,393 + -0.1 500,393 + +0.3 500,394 - +1.2 500,394 - +0.4 500,394 - +0.2 500,394 - +0.7 500,394 - +0.1 500,394 - -0.2 500,394 - +0.8 500,405 - -1.3 500,405 - -0.4 500,427 - +0.3 500,427 - +0.8 500,588 - EX31_RS19370 0.27 +0.7 500,640 + EX31_RS19370 0.37 -1.1 500,653 + EX31_RS19370 0.40 +0.4 500,685 + EX31_RS19370 0.46 +0.9 500,685 + EX31_RS19370 0.46 +1.1 500,685 + EX31_RS19370 0.46 +0.5 500,686 - EX31_RS19370 0.46 -0.6 500,782 + EX31_RS19370 0.65 +0.3 500,783 - EX31_RS19370 0.65 +0.4 500,783 - EX31_RS19370 0.65 +1.2 500,850 - EX31_RS19370 0.78 +1.5 500,881 + EX31_RS19370 0.84 +0.1 500,895 + EX31_RS19370 0.86 -0.1 500,896 - EX31_RS19370 0.87 +0.5 500,953 + -1.4 500,977 + +0.7 500,977 + -0.1 500,977 + -0.1 500,978 - -0.2 500,978 - +1.1 500,978 - -0.2 500,980 + +0.2 500,981 - -0.1 500,981 - +0.1 500,981 - +1.4 500,981 - -0.4 500,981 - +1.3 500,981 - +0.3 501,002 + +0.8 501,002 + +1.2 501,002 + +0.9 501,003 - -0.9 501,053 - -1.6 501,066 + +0.7 501,066 + -0.6 501,066 + +0.6 501,066 + -0.1 501,066 + +0.1 501,066 + +0.7 501,066 + +0.3 501,067 - -0.6 501,070 + +0.8 501,070 + +0.9 501,070 + +1.3 501,070 + +0.7 501,071 - -0.1 501,072 + +0.2 501,072 + +0.3 501,072 + +0.4 501,072 + -0.2 501,072 + -0.9 501,073 - -0.3 501,073 - -1.6 501,073 - -0.4 501,073 - +1.9 501,073 - -1.1 501,104 + +0.4 501,105 - -1.0 501,105 - +0.9 501,105 - +0.5 501,147 + -1.4 501,147 + -0.7 501,147 + +0.9 501,147 + -0.6 501,148 - +0.9 501,148 - -0.2 501,148 - -0.2 501,148 - +0.1 501,148 - -0.5 501,211 - +0.9 501,318 - EX31_RS19375 0.11 -2.8 501,342 - EX31_RS19375 0.13 -0.3 501,344 + EX31_RS19375 0.13 +1.9 501,345 - EX31_RS19375 0.13 -2.2 501,511 - EX31_RS19375 0.24 +0.9 501,630 - EX31_RS19375 0.32 -1.4 501,630 - EX31_RS19375 0.32 -0.1 501,631 + EX31_RS19375 0.32 -0.1 501,631 + EX31_RS19375 0.32 -0.6 501,631 + EX31_RS19375 0.32 +0.9 501,632 - EX31_RS19375 0.33 +0.2 502,302 - EX31_RS19375 0.78 -1.4 502,302 - EX31_RS19375 0.78 -1.1 502,302 - EX31_RS19375 0.78 -2.1 502,391 + EX31_RS19375 0.84 -1.6 502,391 + EX31_RS19375 0.84 -1.1 502,392 - EX31_RS19375 0.85 +0.9 502,457 + EX31_RS19375 0.89 -0.6 502,458 - EX31_RS19375 0.89 -1.4 502,460 + EX31_RS19375 0.89 +0.9 502,586 - -1.1 502,608 + +0.9 502,608 + +0.4 502,744 + -0.6 502,745 - -1.1 502,745 - +0.9 502,745 - -0.4 502,851 - EX31_RS19380 0.15 -0.1 502,947 + EX31_RS19380 0.21 -1.1 502,948 - EX31_RS19380 0.21 +0.1 502,948 - EX31_RS19380 0.21 -0.4 503,043 + EX31_RS19380 0.27 -0.6 503,069 - EX31_RS19380 0.29 -1.6 503,091 + EX31_RS19380 0.31 +0.9 503,162 + EX31_RS19380 0.35 -0.1 503,221 - EX31_RS19380 0.39 -0.3 503,221 - EX31_RS19380 0.39 -1.1 503,256 - EX31_RS19380 0.41 +0.9 503,256 - EX31_RS19380 0.41 -1.4 503,263 - EX31_RS19380 0.42 -2.4 503,493 - EX31_RS19380 0.57 -0.6 503,535 - EX31_RS19380 0.60 +0.9 503,564 + EX31_RS19380 0.61 -0.6 503,565 - EX31_RS19380 0.62 -1.4 503,565 - EX31_RS19380 0.62 -1.9 503,565 - EX31_RS19380 0.62 +0.5
Or see this region's nucleotide sequence