Strain Fitness in Rahnella sp. WP5 around EX31_RS18665

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18660 and EX31_RS18665 are separated by 158 nucleotidesEX31_RS18665 and EX31_RS18670 are separated by 226 nucleotides EX31_RS18660: EX31_RS18660 - cytidine deaminase, at 310,089 to 310,973 _RS18660 EX31_RS18665: EX31_RS18665 - NAD-dependent malic enzyme, at 311,132 to 312,829 _RS18665 EX31_RS18670: EX31_RS18670 - outer membrane permeability protein SanA, at 313,056 to 313,979 _RS18670 Position (kb) 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.210 kb on + strand, within EX31_RS18660at 310.284 kb on - strand, within EX31_RS18660at 310.284 kb on - strand, within EX31_RS18660at 310.289 kb on + strand, within EX31_RS18660at 310.290 kb on - strand, within EX31_RS18660at 310.493 kb on + strand, within EX31_RS18660at 310.494 kb on - strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.638 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.712 kb on + strand, within EX31_RS18660at 310.713 kb on - strand, within EX31_RS18660at 310.713 kb on - strand, within EX31_RS18660at 310.835 kb on + strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.952 kb on + strandat 310.975 kb on - strandat 310.975 kb on - strandat 310.994 kb on + strandat 310.994 kb on + strandat 310.995 kb on - strandat 311.019 kb on - strandat 311.022 kb on + strandat 311.022 kb on + strandat 311.023 kb on - strandat 311.023 kb on - strandat 311.026 kb on + strandat 311.027 kb on - strandat 311.027 kb on - strandat 311.039 kb on - strandat 311.060 kb on + strandat 311.060 kb on + strandat 311.060 kb on + strandat 311.061 kb on - strandat 311.095 kb on + strandat 311.165 kb on + strandat 311.165 kb on + strandat 311.165 kb on + strandat 311.165 kb on + strandat 311.165 kb on + strandat 311.166 kb on - strandat 311.166 kb on - strandat 311.228 kb on - strandat 311.357 kb on + strand, within EX31_RS18665at 311.358 kb on - strand, within EX31_RS18665at 311.358 kb on - strand, within EX31_RS18665at 311.396 kb on + strand, within EX31_RS18665at 311.442 kb on - strand, within EX31_RS18665at 311.442 kb on - strand, within EX31_RS18665at 311.486 kb on + strand, within EX31_RS18665at 311.571 kb on + strand, within EX31_RS18665at 311.571 kb on + strand, within EX31_RS18665at 311.666 kb on + strand, within EX31_RS18665at 311.666 kb on + strand, within EX31_RS18665at 311.696 kb on + strand, within EX31_RS18665at 311.696 kb on + strand, within EX31_RS18665at 311.696 kb on + strand, within EX31_RS18665at 311.697 kb on - strand, within EX31_RS18665at 311.697 kb on - strand, within EX31_RS18665at 311.698 kb on + strand, within EX31_RS18665at 311.699 kb on - strand, within EX31_RS18665at 311.742 kb on + strand, within EX31_RS18665at 311.742 kb on + strand, within EX31_RS18665at 311.743 kb on - strand, within EX31_RS18665at 311.759 kb on + strand, within EX31_RS18665at 311.759 kb on + strand, within EX31_RS18665at 311.759 kb on + strand, within EX31_RS18665at 311.760 kb on - strand, within EX31_RS18665at 311.760 kb on - strand, within EX31_RS18665at 311.760 kb on - strand, within EX31_RS18665at 311.760 kb on - strand, within EX31_RS18665at 311.760 kb on - strand, within EX31_RS18665at 311.786 kb on - strand, within EX31_RS18665at 311.971 kb on + strand, within EX31_RS18665at 312.388 kb on + strand, within EX31_RS18665at 312.388 kb on + strand, within EX31_RS18665at 312.388 kb on + strand, within EX31_RS18665at 312.497 kb on + strand, within EX31_RS18665at 312.497 kb on + strand, within EX31_RS18665at 312.497 kb on + strand, within EX31_RS18665at 312.498 kb on - strand, within EX31_RS18665at 312.498 kb on - strand, within EX31_RS18665at 312.503 kb on - strand, within EX31_RS18665at 312.688 kb on + strandat 312.688 kb on + strandat 312.809 kb on + strandat 312.810 kb on - strandat 312.810 kb on - strandat 312.811 kb on + strandat 312.811 kb on + strandat 312.811 kb on + strandat 312.811 kb on + strandat 312.841 kb on + strandat 312.911 kb on - strandat 312.925 kb on - strandat 312.988 kb on + strandat 312.988 kb on + strandat 312.989 kb on - strandat 312.989 kb on - strandat 313.008 kb on + strandat 313.008 kb on + strandat 313.014 kb on - strandat 313.042 kb on + strandat 313.051 kb on + strandat 313.051 kb on + strandat 313.051 kb on + strandat 313.055 kb on + strandat 313.055 kb on + strandat 313.055 kb on + strandat 313.055 kb on + strandat 313.056 kb on - strandat 313.056 kb on - strandat 313.061 kb on + strandat 313.061 kb on + strandat 313.061 kb on + strandat 313.070 kb on + strandat 313.071 kb on - strandat 313.072 kb on + strandat 313.072 kb on + strandat 313.072 kb on + strandat 313.072 kb on + strandat 313.072 kb on + strandat 313.073 kb on - strandat 313.073 kb on - strandat 313.073 kb on - strandat 313.073 kb on - strandat 313.073 kb on - strandat 313.094 kb on + strandat 313.116 kb on - strandat 313.116 kb on - strandat 313.135 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.141 kb on + strandat 313.142 kb on - strandat 313.142 kb on - strandat 313.142 kb on - strandat 313.142 kb on - strandat 313.142 kb on - strandat 313.161 kb on + strand, within EX31_RS18670at 313.162 kb on - strand, within EX31_RS18670at 313.172 kb on - strand, within EX31_RS18670at 313.221 kb on + strand, within EX31_RS18670at 313.221 kb on + strand, within EX31_RS18670at 313.222 kb on - strand, within EX31_RS18670at 313.222 kb on - strand, within EX31_RS18670at 313.222 kb on - strand, within EX31_RS18670at 313.222 kb on - strand, within EX31_RS18670at 313.248 kb on + strand, within EX31_RS18670at 313.248 kb on + strand, within EX31_RS18670at 313.249 kb on - strand, within EX31_RS18670at 313.251 kb on + strand, within EX31_RS18670at 313.251 kb on + strand, within EX31_RS18670at 313.251 kb on + strand, within EX31_RS18670at 313.284 kb on + strand, within EX31_RS18670at 313.284 kb on + strand, within EX31_RS18670at 313.300 kb on + strand, within EX31_RS18670at 313.305 kb on + strand, within EX31_RS18670at 313.305 kb on + strand, within EX31_RS18670at 313.306 kb on - strand, within EX31_RS18670at 313.341 kb on + strand, within EX31_RS18670at 313.342 kb on - strand, within EX31_RS18670at 313.343 kb on + strand, within EX31_RS18670at 313.344 kb on - strand, within EX31_RS18670at 313.344 kb on - strand, within EX31_RS18670at 313.485 kb on - strand, within EX31_RS18670at 313.578 kb on - strand, within EX31_RS18670at 313.636 kb on - strand, within EX31_RS18670at 313.636 kb on - strand, within EX31_RS18670at 313.636 kb on - strand, within EX31_RS18670at 313.644 kb on - strand, within EX31_RS18670at 313.679 kb on + strand, within EX31_RS18670at 313.753 kb on + strand, within EX31_RS18670at 313.753 kb on + strand, within EX31_RS18670at 313.753 kb on + strand, within EX31_RS18670at 313.754 kb on - strand, within EX31_RS18670

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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310,210 + EX31_RS18660 0.14 -0.2
310,284 - EX31_RS18660 0.22 +0.7
310,284 - EX31_RS18660 0.22 -0.9
310,289 + EX31_RS18660 0.23 -0.9
310,290 - EX31_RS18660 0.23 +0.6
310,493 + EX31_RS18660 0.46 -0.1
310,494 - EX31_RS18660 0.46 +1.3
310,549 + EX31_RS18660 0.52 +1.3
310,549 + EX31_RS18660 0.52 -0.4
310,549 + EX31_RS18660 0.52 -0.7
310,549 + EX31_RS18660 0.52 +0.4
310,549 + EX31_RS18660 0.52 -1.4
310,549 + EX31_RS18660 0.52 +0.9
310,549 + EX31_RS18660 0.52 +0.4
310,550 - EX31_RS18660 0.52 -0.1
310,550 - EX31_RS18660 0.52 -2.1
310,550 - EX31_RS18660 0.52 +0.2
310,550 - EX31_RS18660 0.52 +0.2
310,550 - EX31_RS18660 0.52 -0.7
310,550 - EX31_RS18660 0.52 +0.1
310,638 + EX31_RS18660 0.62 +0.8
310,707 + EX31_RS18660 0.70 +0.5
310,707 + EX31_RS18660 0.70 +2.7
310,707 + EX31_RS18660 0.70 -0.3
310,712 + EX31_RS18660 0.70 +0.9
310,713 - EX31_RS18660 0.71 -0.3
310,713 - EX31_RS18660 0.71 +1.5
310,835 + EX31_RS18660 0.84 -0.6
310,836 - EX31_RS18660 0.84 -0.0
310,836 - EX31_RS18660 0.84 -1.7
310,836 - EX31_RS18660 0.84 +0.3
310,836 - EX31_RS18660 0.84 +1.1
310,836 - EX31_RS18660 0.84 +0.1
310,952 + -0.4
310,975 - +0.7
310,975 - +0.9
310,994 + +0.1
310,994 + +0.4
310,995 - +0.3
311,019 - +1.9
311,022 + +1.6
311,022 + +1.9
311,023 - +0.5
311,023 - +0.9
311,026 + +0.9
311,027 - -0.1
311,027 - +1.5
311,039 - -0.1
311,060 + +0.0
311,060 + +0.6
311,060 + -0.3
311,061 - +0.9
311,095 + -0.8
311,165 + +1.5
311,165 + -0.7
311,165 + +0.6
311,165 + +1.2
311,165 + +0.5
311,166 - -1.9
311,166 - +0.6
311,228 - +2.0
311,357 + EX31_RS18665 0.13 +1.4
311,358 - EX31_RS18665 0.13 -1.4
311,358 - EX31_RS18665 0.13 -0.1
311,396 + EX31_RS18665 0.16 +0.7
311,442 - EX31_RS18665 0.18 +0.7
311,442 - EX31_RS18665 0.18 +0.1
311,486 + EX31_RS18665 0.21 +1.1
311,571 + EX31_RS18665 0.26 -0.3
311,571 + EX31_RS18665 0.26 +2.1
311,666 + EX31_RS18665 0.31 -0.8
311,666 + EX31_RS18665 0.31 +0.1
311,696 + EX31_RS18665 0.33 +0.6
311,696 + EX31_RS18665 0.33 +0.9
311,696 + EX31_RS18665 0.33 +0.9
311,697 - EX31_RS18665 0.33 +0.9
311,697 - EX31_RS18665 0.33 -1.7
311,698 + EX31_RS18665 0.33 +0.5
311,699 - EX31_RS18665 0.33 +0.9
311,742 + EX31_RS18665 0.36 +0.2
311,742 + EX31_RS18665 0.36 -0.6
311,743 - EX31_RS18665 0.36 +2.5
311,759 + EX31_RS18665 0.37 -0.3
311,759 + EX31_RS18665 0.37 +1.4
311,759 + EX31_RS18665 0.37 -0.1
311,760 - EX31_RS18665 0.37 +0.5
311,760 - EX31_RS18665 0.37 -0.1
311,760 - EX31_RS18665 0.37 -0.1
311,760 - EX31_RS18665 0.37 +0.7
311,760 - EX31_RS18665 0.37 +0.6
311,786 - EX31_RS18665 0.39 +0.6
311,971 + EX31_RS18665 0.49 +0.4
312,388 + EX31_RS18665 0.74 +0.2
312,388 + EX31_RS18665 0.74 +0.3
312,388 + EX31_RS18665 0.74 +1.3
312,497 + EX31_RS18665 0.80 -1.2
312,497 + EX31_RS18665 0.80 -0.4
312,497 + EX31_RS18665 0.80 +0.1
312,498 - EX31_RS18665 0.80 -1.3
312,498 - EX31_RS18665 0.80 -0.5
312,503 - EX31_RS18665 0.81 -0.3
312,688 + -0.7
312,688 + -0.1
312,809 + -0.7
312,810 - +0.9
312,810 - +0.0
312,811 + -0.5
312,811 + +0.9
312,811 + +2.6
312,811 + +1.6
312,841 + -1.1
312,911 - -0.9
312,925 - +0.5
312,988 + +0.9
312,988 + +0.3
312,989 - +0.5
312,989 - +0.9
313,008 + -1.0
313,008 + +0.2
313,014 - -0.1
313,042 + -0.6
313,051 + -0.5
313,051 + +0.5
313,051 + -1.7
313,055 + +1.0
313,055 + +1.2
313,055 + -0.8
313,055 + +0.4
313,056 - -1.3
313,056 - +0.1
313,061 + -1.1
313,061 + +0.9
313,061 + -0.3
313,070 + -0.7
313,071 - -1.1
313,072 + -0.7
313,072 + -0.5
313,072 + -0.9
313,072 + -0.7
313,072 + -0.8
313,073 - -0.1
313,073 - +0.9
313,073 - +0.1
313,073 - +0.6
313,073 - -2.4
313,094 + -1.1
313,116 - +0.4
313,116 - -0.8
313,135 + +0.9
313,141 + -1.1
313,141 + +0.7
313,141 + -0.5
313,141 + +0.9
313,141 + -0.3
313,141 + -2.9
313,141 + -0.7
313,141 + -2.3
313,142 - -0.1
313,142 - -2.3
313,142 - -0.9
313,142 - -1.5
313,142 - +0.9
313,161 + EX31_RS18670 0.11 +0.9
313,162 - EX31_RS18670 0.11 +0.5
313,172 - EX31_RS18670 0.13 -0.6
313,221 + EX31_RS18670 0.18 -1.6
313,221 + EX31_RS18670 0.18 -1.3
313,222 - EX31_RS18670 0.18 -0.3
313,222 - EX31_RS18670 0.18 +0.5
313,222 - EX31_RS18670 0.18 -0.7
313,222 - EX31_RS18670 0.18 +1.2
313,248 + EX31_RS18670 0.21 +0.6
313,248 + EX31_RS18670 0.21 -0.8
313,249 - EX31_RS18670 0.21 -1.9
313,251 + EX31_RS18670 0.21 -0.1
313,251 + EX31_RS18670 0.21 -0.8
313,251 + EX31_RS18670 0.21 -0.9
313,284 + EX31_RS18670 0.25 +0.0
313,284 + EX31_RS18670 0.25 +0.3
313,300 + EX31_RS18670 0.26 +1.3
313,305 + EX31_RS18670 0.27 +0.2
313,305 + EX31_RS18670 0.27 -1.4
313,306 - EX31_RS18670 0.27 -0.1
313,341 + EX31_RS18670 0.31 -2.1
313,342 - EX31_RS18670 0.31 +0.9
313,343 + EX31_RS18670 0.31 -1.2
313,344 - EX31_RS18670 0.31 +0.9
313,344 - EX31_RS18670 0.31 -0.1
313,485 - EX31_RS18670 0.46 +1.5
313,578 - EX31_RS18670 0.56 +0.5
313,636 - EX31_RS18670 0.63 +0.1
313,636 - EX31_RS18670 0.63 +1.4
313,636 - EX31_RS18670 0.63 +0.5
313,644 - EX31_RS18670 0.64 -0.5
313,679 + EX31_RS18670 0.67 +1.3
313,753 + EX31_RS18670 0.75 +2.0
313,753 + EX31_RS18670 0.75 -0.3
313,753 + EX31_RS18670 0.75 +0.9
313,754 - EX31_RS18670 0.76 -1.4

Or see this region's nucleotide sequence