Strain Fitness in Rahnella sp. WP5 around EX31_RS18410

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18405 and EX31_RS18410 are separated by 517 nucleotidesEX31_RS18410 and EX31_RS25005 are separated by 165 nucleotidesEX31_RS25005 and EX31_RS18420 overlap by 17 nucleotides EX31_RS18405: EX31_RS18405 - hypothetical protein, at 251,313 to 254,678 _RS18405 EX31_RS18410: EX31_RS18410 - hypothetical protein, at 255,196 to 256,554 _RS18410 EX31_RS25005: EX31_RS25005 - hypothetical protein, at 256,720 to 256,911 _RS25005 EX31_RS18420: EX31_RS18420 - hypothetical protein, at 256,895 to 257,722 _RS18420 Position (kb) 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.267 kb on + strand, within EX31_RS18405at 254.268 kb on - strand, within EX31_RS18405at 254.268 kb on - strand, within EX31_RS18405at 254.586 kb on + strandat 254.731 kb on - strandat 254.733 kb on - strandat 254.733 kb on - strandat 254.733 kb on - strandat 254.736 kb on + strandat 254.736 kb on + strandat 254.736 kb on + strandat 254.736 kb on + strandat 254.824 kb on - strandat 254.829 kb on + strandat 254.859 kb on + strandat 254.861 kb on + strandat 254.861 kb on + strandat 254.862 kb on - strandat 254.862 kb on - strandat 254.862 kb on - strandat 254.862 kb on - strandat 254.862 kb on - strandat 254.865 kb on + strandat 254.865 kb on + strandat 254.866 kb on - strandat 254.866 kb on - strandat 254.930 kb on - strandat 254.940 kb on + strandat 254.941 kb on - strandat 254.941 kb on - strandat 254.954 kb on + strandat 254.963 kb on + strandat 254.985 kb on + strandat 255.022 kb on - strandat 255.022 kb on - strandat 255.099 kb on - strandat 255.119 kb on - strandat 255.146 kb on + strandat 255.150 kb on + strandat 255.156 kb on + strandat 255.157 kb on - strandat 255.157 kb on - strandat 255.163 kb on - strandat 255.179 kb on + strandat 255.246 kb on + strandat 255.246 kb on + strandat 255.250 kb on + strandat 255.297 kb on + strandat 255.297 kb on + strandat 255.353 kb on + strand, within EX31_RS18410at 255.358 kb on + strand, within EX31_RS18410at 255.358 kb on + strand, within EX31_RS18410at 255.358 kb on + strand, within EX31_RS18410at 255.414 kb on + strand, within EX31_RS18410at 255.446 kb on - strand, within EX31_RS18410at 255.497 kb on + strand, within EX31_RS18410at 255.497 kb on + strand, within EX31_RS18410at 255.497 kb on + strand, within EX31_RS18410at 255.613 kb on - strand, within EX31_RS18410at 255.671 kb on + strand, within EX31_RS18410at 255.680 kb on + strand, within EX31_RS18410at 255.680 kb on + strand, within EX31_RS18410at 255.795 kb on + strand, within EX31_RS18410at 255.795 kb on + strand, within EX31_RS18410at 255.861 kb on + strand, within EX31_RS18410at 255.862 kb on - strand, within EX31_RS18410at 255.863 kb on + strand, within EX31_RS18410at 255.863 kb on + strand, within EX31_RS18410at 255.864 kb on - strand, within EX31_RS18410at 255.876 kb on - strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.921 kb on + strand, within EX31_RS18410at 255.944 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.991 kb on + strand, within EX31_RS18410at 255.992 kb on - strand, within EX31_RS18410at 255.992 kb on - strand, within EX31_RS18410at 256.007 kb on + strand, within EX31_RS18410at 256.060 kb on - strand, within EX31_RS18410at 256.062 kb on + strand, within EX31_RS18410at 256.063 kb on - strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.065 kb on + strand, within EX31_RS18410at 256.066 kb on - strand, within EX31_RS18410at 256.066 kb on - strand, within EX31_RS18410at 256.067 kb on + strand, within EX31_RS18410at 256.102 kb on + strand, within EX31_RS18410at 256.103 kb on - strand, within EX31_RS18410at 256.103 kb on - strand, within EX31_RS18410at 256.144 kb on - strand, within EX31_RS18410at 256.176 kb on + strand, within EX31_RS18410at 256.176 kb on + strand, within EX31_RS18410at 256.177 kb on - strand, within EX31_RS18410at 256.179 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.206 kb on + strand, within EX31_RS18410at 256.207 kb on - strand, within EX31_RS18410at 256.207 kb on - strand, within EX31_RS18410at 256.287 kb on + strand, within EX31_RS18410at 256.287 kb on + strand, within EX31_RS18410at 256.288 kb on - strand, within EX31_RS18410at 256.288 kb on - strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.292 kb on + strand, within EX31_RS18410at 256.293 kb on - strand, within EX31_RS18410at 256.293 kb on - strand, within EX31_RS18410at 256.302 kb on + strand, within EX31_RS18410at 256.311 kb on - strand, within EX31_RS18410at 256.311 kb on - strand, within EX31_RS18410at 256.338 kb on + strand, within EX31_RS18410at 256.338 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.350 kb on + strand, within EX31_RS18410at 256.351 kb on - strand, within EX31_RS18410at 256.357 kb on - strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.375 kb on + strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.376 kb on - strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.377 kb on + strand, within EX31_RS18410at 256.378 kb on - strand, within EX31_RS18410at 256.382 kb on + strand, within EX31_RS18410at 256.382 kb on + strand, within EX31_RS18410at 256.422 kb on + strandat 256.422 kb on + strandat 256.426 kb on + strandat 256.426 kb on + strandat 256.471 kb on + strandat 256.471 kb on + strandat 256.471 kb on + strandat 256.472 kb on - strandat 256.514 kb on + strandat 256.514 kb on + strandat 256.514 kb on + strandat 256.518 kb on + strandat 256.518 kb on + strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.519 kb on - strandat 256.520 kb on + strandat 256.520 kb on + strandat 256.638 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.660 kb on + strandat 256.666 kb on + strandat 256.782 kb on + strand, within EX31_RS25005at 256.805 kb on + strand, within EX31_RS25005at 256.823 kb on + strand, within EX31_RS25005at 256.823 kb on + strand, within EX31_RS25005at 256.848 kb on + strand, within EX31_RS25005at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.050 kb on + strand, within EX31_RS18420at 257.189 kb on + strand, within EX31_RS18420at 257.244 kb on + strand, within EX31_RS18420at 257.248 kb on + strand, within EX31_RS18420at 257.249 kb on - strand, within EX31_RS18420at 257.331 kb on + strand, within EX31_RS18420at 257.402 kb on - strand, within EX31_RS18420at 257.412 kb on + strand, within EX31_RS18420at 257.438 kb on - strand, within EX31_RS18420at 257.484 kb on + strand, within EX31_RS18420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
254,267 + EX31_RS18405 0.88 -1.8
254,268 - EX31_RS18405 0.88 -0.4
254,268 - EX31_RS18405 0.88 -2.0
254,586 + -0.2
254,731 - +0.8
254,733 - -1.3
254,733 - -0.2
254,733 - +0.8
254,736 + -0.2
254,736 + +0.3
254,736 + -0.0
254,736 + +2.2
254,824 - +1.2
254,829 + +1.8
254,859 + -0.3
254,861 + -0.2
254,861 + -0.6
254,862 - +0.2
254,862 - +0.2
254,862 - -0.8
254,862 - +0.5
254,862 - +0.4
254,865 + +0.0
254,865 + -2.2
254,866 - -0.9
254,866 - +0.3
254,930 - -1.2
254,940 + -0.9
254,941 - +0.8
254,941 - -0.1
254,954 + +1.4
254,963 + +0.8
254,985 + +0.6
255,022 - -0.5
255,022 - +2.4
255,099 - +1.2
255,119 - +0.4
255,146 + +0.2
255,150 + -0.3
255,156 + +0.6
255,157 - +0.6
255,157 - -0.1
255,163 - -0.8
255,179 + -0.6
255,246 + +1.2
255,246 + +0.3
255,250 + +1.0
255,297 + +0.5
255,297 + -0.0
255,353 + EX31_RS18410 0.12 +0.5
255,358 + EX31_RS18410 0.12 +0.1
255,358 + EX31_RS18410 0.12 -0.2
255,358 + EX31_RS18410 0.12 +1.5
255,414 + EX31_RS18410 0.16 +0.7
255,446 - EX31_RS18410 0.18 -1.2
255,497 + EX31_RS18410 0.22 +0.6
255,497 + EX31_RS18410 0.22 +1.4
255,497 + EX31_RS18410 0.22 -0.8
255,613 - EX31_RS18410 0.31 +0.2
255,671 + EX31_RS18410 0.35 -1.1
255,680 + EX31_RS18410 0.36 -0.4
255,680 + EX31_RS18410 0.36 +0.4
255,795 + EX31_RS18410 0.44 +0.2
255,795 + EX31_RS18410 0.44 +0.4
255,861 + EX31_RS18410 0.49 -0.5
255,862 - EX31_RS18410 0.49 -0.4
255,863 + EX31_RS18410 0.49 -0.8
255,863 + EX31_RS18410 0.49 +0.3
255,864 - EX31_RS18410 0.49 -1.3
255,876 - EX31_RS18410 0.50 +0.1
255,921 + EX31_RS18410 0.53 +0.4
255,921 + EX31_RS18410 0.53 +0.6
255,921 + EX31_RS18410 0.53 +0.1
255,921 + EX31_RS18410 0.53 +0.6
255,944 + EX31_RS18410 0.55 -1.5
255,991 + EX31_RS18410 0.58 -0.2
255,991 + EX31_RS18410 0.58 -0.2
255,991 + EX31_RS18410 0.58 -0.2
255,991 + EX31_RS18410 0.58 -0.1
255,991 + EX31_RS18410 0.58 -0.5
255,991 + EX31_RS18410 0.58 +0.1
255,991 + EX31_RS18410 0.58 -2.3
255,992 - EX31_RS18410 0.59 +0.4
255,992 - EX31_RS18410 0.59 -2.8
256,007 + EX31_RS18410 0.60 +1.3
256,060 - EX31_RS18410 0.64 -0.5
256,062 + EX31_RS18410 0.64 +0.1
256,063 - EX31_RS18410 0.64 +1.2
256,065 + EX31_RS18410 0.64 +1.3
256,065 + EX31_RS18410 0.64 +1.1
256,065 + EX31_RS18410 0.64 +0.1
256,065 + EX31_RS18410 0.64 -0.5
256,066 - EX31_RS18410 0.64 -0.5
256,066 - EX31_RS18410 0.64 -1.8
256,067 + EX31_RS18410 0.64 -0.6
256,102 + EX31_RS18410 0.67 -0.6
256,103 - EX31_RS18410 0.67 +1.9
256,103 - EX31_RS18410 0.67 +1.2
256,144 - EX31_RS18410 0.70 -0.4
256,176 + EX31_RS18410 0.72 +0.2
256,176 + EX31_RS18410 0.72 +0.3
256,177 - EX31_RS18410 0.72 -0.2
256,179 + EX31_RS18410 0.72 +1.1
256,206 + EX31_RS18410 0.74 +1.1
256,206 + EX31_RS18410 0.74 -1.2
256,206 + EX31_RS18410 0.74 -0.0
256,206 + EX31_RS18410 0.74 +0.2
256,206 + EX31_RS18410 0.74 -0.3
256,206 + EX31_RS18410 0.74 +0.0
256,206 + EX31_RS18410 0.74 -0.5
256,206 + EX31_RS18410 0.74 +0.0
256,206 + EX31_RS18410 0.74 +0.6
256,206 + EX31_RS18410 0.74 +1.2
256,206 + EX31_RS18410 0.74 +0.1
256,206 + EX31_RS18410 0.74 +0.8
256,206 + EX31_RS18410 0.74 +0.6
256,207 - EX31_RS18410 0.74 +1.3
256,207 - EX31_RS18410 0.74 -1.1
256,287 + EX31_RS18410 0.80 +0.2
256,287 + EX31_RS18410 0.80 +0.0
256,288 - EX31_RS18410 0.80 +0.7
256,288 - EX31_RS18410 0.80 +3.2
256,292 + EX31_RS18410 0.81 -1.2
256,292 + EX31_RS18410 0.81 +0.2
256,292 + EX31_RS18410 0.81 +0.6
256,293 - EX31_RS18410 0.81 +0.6
256,293 - EX31_RS18410 0.81 -0.2
256,302 + EX31_RS18410 0.81 +0.6
256,311 - EX31_RS18410 0.82 +0.1
256,311 - EX31_RS18410 0.82 -1.3
256,338 + EX31_RS18410 0.84 -1.0
256,338 + EX31_RS18410 0.84 +0.8
256,350 + EX31_RS18410 0.85 +1.2
256,350 + EX31_RS18410 0.85 +1.3
256,350 + EX31_RS18410 0.85 +0.1
256,350 + EX31_RS18410 0.85 -0.2
256,350 + EX31_RS18410 0.85 +1.9
256,350 + EX31_RS18410 0.85 +0.8
256,351 - EX31_RS18410 0.85 +2.4
256,357 - EX31_RS18410 0.85 +1.1
256,375 + EX31_RS18410 0.87 +0.8
256,375 + EX31_RS18410 0.87 -0.4
256,375 + EX31_RS18410 0.87 +0.1
256,375 + EX31_RS18410 0.87 -2.3
256,375 + EX31_RS18410 0.87 +0.2
256,376 - EX31_RS18410 0.87 -0.0
256,376 - EX31_RS18410 0.87 +1.0
256,376 - EX31_RS18410 0.87 +1.3
256,376 - EX31_RS18410 0.87 -0.9
256,377 + EX31_RS18410 0.87 +1.8
256,377 + EX31_RS18410 0.87 +0.4
256,377 + EX31_RS18410 0.87 +0.1
256,377 + EX31_RS18410 0.87 -0.1
256,378 - EX31_RS18410 0.87 +0.6
256,382 + EX31_RS18410 0.87 +1.0
256,382 + EX31_RS18410 0.87 -1.2
256,422 + +1.1
256,422 + -1.0
256,426 + -0.8
256,426 + -1.2
256,471 + +0.7
256,471 + +0.2
256,471 + +0.3
256,472 - +1.8
256,514 + -0.3
256,514 + +0.1
256,514 + +0.2
256,518 + +0.4
256,518 + +0.7
256,519 - -0.2
256,519 - +0.8
256,519 - +0.5
256,519 - -0.2
256,520 + +0.0
256,520 + -0.4
256,638 + +0.5
256,660 + +0.3
256,660 + +0.9
256,660 + +0.2
256,660 + +1.3
256,660 + -0.8
256,666 + -0.4
256,782 + EX31_RS25005 0.32 -0.7
256,805 + EX31_RS25005 0.44 -0.5
256,823 + EX31_RS25005 0.54 -0.2
256,823 + EX31_RS25005 0.54 +1.0
256,848 + EX31_RS25005 0.67 +0.1
257,050 + EX31_RS18420 0.19 +0.8
257,050 + EX31_RS18420 0.19 +0.6
257,050 + EX31_RS18420 0.19 -0.4
257,189 + EX31_RS18420 0.36 -0.5
257,244 + EX31_RS18420 0.42 +2.2
257,248 + EX31_RS18420 0.43 -1.2
257,249 - EX31_RS18420 0.43 +0.7
257,331 + EX31_RS18420 0.53 -0.5
257,402 - EX31_RS18420 0.61 +0.6
257,412 + EX31_RS18420 0.62 -0.3
257,438 - EX31_RS18420 0.66 +0.3
257,484 + EX31_RS18420 0.71 +0.8

Or see this region's nucleotide sequence