Strain Fitness in Rahnella sp. WP5 around EX31_RS17840

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17830 and EX31_RS17835 are separated by 253 nucleotidesEX31_RS17835 and EX31_RS17840 are separated by 80 nucleotidesEX31_RS17840 and EX31_RS17845 are separated by 65 nucleotides EX31_RS17830: EX31_RS17830 - maltoporin, at 121,290 to 122,546 _RS17830 EX31_RS17835: EX31_RS17835 - PTS transporter subunit EIIB, at 122,800 to 123,117 _RS17835 EX31_RS17840: EX31_RS17840 - beta-galactosidase, at 123,198 to 125,267 _RS17840 EX31_RS17845: EX31_RS17845 - cellulase family glycosylhydrolase, at 125,333 to 126,544 _RS17845 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2 3at 122.209 kb on - strand, within EX31_RS17830at 122.280 kb on + strand, within EX31_RS17830at 122.295 kb on + strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.296 kb on - strand, within EX31_RS17830at 122.343 kb on + strand, within EX31_RS17830at 122.344 kb on - strand, within EX31_RS17830at 122.382 kb on + strand, within EX31_RS17830at 122.382 kb on + strand, within EX31_RS17830at 122.383 kb on - strand, within EX31_RS17830at 122.384 kb on + strand, within EX31_RS17830at 122.454 kb on + strandat 122.496 kb on - strandat 122.496 kb on - strandat 122.508 kb on - strandat 122.531 kb on - strandat 122.614 kb on + strandat 122.715 kb on + strandat 122.806 kb on - strandat 122.922 kb on + strand, within EX31_RS17835at 122.944 kb on - strand, within EX31_RS17835at 122.954 kb on - strand, within EX31_RS17835at 122.976 kb on + strand, within EX31_RS17835at 123.089 kb on - strandat 123.097 kb on - strandat 123.112 kb on + strandat 123.493 kb on + strand, within EX31_RS17840at 123.493 kb on + strand, within EX31_RS17840at 123.496 kb on + strand, within EX31_RS17840at 123.563 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.861 kb on - strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.862 kb on + strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.863 kb on - strand, within EX31_RS17840at 123.898 kb on - strand, within EX31_RS17840at 123.898 kb on - strand, within EX31_RS17840at 123.979 kb on + strand, within EX31_RS17840at 123.979 kb on + strand, within EX31_RS17840at 124.046 kb on + strand, within EX31_RS17840at 124.046 kb on + strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.047 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840at 124.066 kb on - strand, within EX31_RS17840at 124.146 kb on - strand, within EX31_RS17840at 124.216 kb on + strand, within EX31_RS17840at 124.265 kb on + strand, within EX31_RS17840at 124.265 kb on + strand, within EX31_RS17840at 124.265 kb on + strand, within EX31_RS17840at 124.265 kb on + strand, within EX31_RS17840at 124.266 kb on - strand, within EX31_RS17840at 124.266 kb on - strand, within EX31_RS17840at 124.368 kb on + strand, within EX31_RS17840at 124.369 kb on - strand, within EX31_RS17840at 124.378 kb on + strand, within EX31_RS17840at 124.378 kb on + strand, within EX31_RS17840at 124.379 kb on - strand, within EX31_RS17840at 124.436 kb on - strand, within EX31_RS17840at 124.492 kb on + strand, within EX31_RS17840at 124.498 kb on + strand, within EX31_RS17840at 124.498 kb on + strand, within EX31_RS17840at 124.499 kb on - strand, within EX31_RS17840at 124.675 kb on + strand, within EX31_RS17840at 124.675 kb on + strand, within EX31_RS17840at 124.675 kb on + strand, within EX31_RS17840at 124.733 kb on - strand, within EX31_RS17840at 124.809 kb on - strand, within EX31_RS17840at 124.902 kb on - strand, within EX31_RS17840at 124.970 kb on - strand, within EX31_RS17840at 125.020 kb on - strand, within EX31_RS17840at 125.075 kb on + strandat 125.111 kb on + strandat 125.112 kb on - strandat 125.135 kb on + strandat 125.136 kb on - strandat 125.136 kb on - strandat 125.136 kb on - strandat 125.136 kb on - strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.223 kb on + strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.224 kb on - strandat 125.334 kb on + strandat 125.335 kb on - strandat 125.335 kb on - strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.482 kb on + strand, within EX31_RS17845at 125.482 kb on + strand, within EX31_RS17845at 125.483 kb on - strand, within EX31_RS17845at 125.483 kb on - strand, within EX31_RS17845at 125.483 kb on - strand, within EX31_RS17845at 125.483 kb on - strand, within EX31_RS17845at 125.651 kb on - strand, within EX31_RS17845at 125.651 kb on - strand, within EX31_RS17845at 125.691 kb on + strand, within EX31_RS17845at 125.692 kb on - strand, within EX31_RS17845at 125.748 kb on + strand, within EX31_RS17845at 125.748 kb on + strand, within EX31_RS17845at 125.749 kb on - strand, within EX31_RS17845at 125.753 kb on - strand, within EX31_RS17845at 125.754 kb on + strand, within EX31_RS17845at 125.755 kb on - strand, within EX31_RS17845at 125.778 kb on + strand, within EX31_RS17845at 125.778 kb on + strand, within EX31_RS17845at 125.779 kb on - strand, within EX31_RS17845at 125.779 kb on - strand, within EX31_RS17845at 126.067 kb on - strand, within EX31_RS17845at 126.182 kb on - strand, within EX31_RS17845

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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122,209 - EX31_RS17830 0.73 +0.4
122,280 + EX31_RS17830 0.79 -0.3
122,295 + EX31_RS17830 0.80 -1.4
122,296 - EX31_RS17830 0.80 +2.3
122,296 - EX31_RS17830 0.80 +0.3
122,296 - EX31_RS17830 0.80 +1.7
122,343 + EX31_RS17830 0.84 -1.8
122,344 - EX31_RS17830 0.84 +2.3
122,382 + EX31_RS17830 0.87 +1.7
122,382 + EX31_RS17830 0.87 +0.3
122,383 - EX31_RS17830 0.87 -0.4
122,384 + EX31_RS17830 0.87 -0.3
122,454 + -0.7
122,496 - +2.7
122,496 - +0.1
122,508 - -0.3
122,531 - +0.1
122,614 + +2.9
122,715 + -0.1
122,806 - +1.7
122,922 + EX31_RS17835 0.38 +1.3
122,944 - EX31_RS17835 0.45 -0.3
122,954 - EX31_RS17835 0.48 -0.5
122,976 + EX31_RS17835 0.55 +2.0
123,089 - +0.1
123,097 - +2.3
123,112 + +0.7
123,493 + EX31_RS17840 0.14 +1.5
123,493 + EX31_RS17840 0.14 +2.6
123,496 + EX31_RS17840 0.14 -1.3
123,563 - EX31_RS17840 0.18 -0.3
123,861 - EX31_RS17840 0.32 +1.5
123,861 - EX31_RS17840 0.32 -1.6
123,861 - EX31_RS17840 0.32 +0.7
123,862 + EX31_RS17840 0.32 +0.7
123,862 + EX31_RS17840 0.32 +0.3
123,862 + EX31_RS17840 0.32 +1.4
123,862 + EX31_RS17840 0.32 -1.3
123,863 - EX31_RS17840 0.32 -0.9
123,863 - EX31_RS17840 0.32 -1.3
123,863 - EX31_RS17840 0.32 -2.4
123,863 - EX31_RS17840 0.32 -0.4
123,863 - EX31_RS17840 0.32 +0.7
123,863 - EX31_RS17840 0.32 +0.7
123,863 - EX31_RS17840 0.32 -0.4
123,863 - EX31_RS17840 0.32 +0.0
123,863 - EX31_RS17840 0.32 +0.4
123,898 - EX31_RS17840 0.34 -1.1
123,898 - EX31_RS17840 0.34 +1.2
123,979 + EX31_RS17840 0.38 +0.7
123,979 + EX31_RS17840 0.38 +0.1
124,046 + EX31_RS17840 0.41 -0.0
124,046 + EX31_RS17840 0.41 -0.9
124,047 - EX31_RS17840 0.41 -0.2
124,047 - EX31_RS17840 0.41 -1.6
124,047 - EX31_RS17840 0.41 -0.5
124,066 - EX31_RS17840 0.42 +0.5
124,066 - EX31_RS17840 0.42 -2.0
124,066 - EX31_RS17840 0.42 +0.7
124,146 - EX31_RS17840 0.46 -0.9
124,216 + EX31_RS17840 0.49 +0.7
124,265 + EX31_RS17840 0.52 -1.3
124,265 + EX31_RS17840 0.52 +0.6
124,265 + EX31_RS17840 0.52 +0.4
124,265 + EX31_RS17840 0.52 -0.3
124,266 - EX31_RS17840 0.52 +0.3
124,266 - EX31_RS17840 0.52 +1.3
124,368 + EX31_RS17840 0.57 +0.4
124,369 - EX31_RS17840 0.57 -0.3
124,378 + EX31_RS17840 0.57 -0.4
124,378 + EX31_RS17840 0.57 -0.7
124,379 - EX31_RS17840 0.57 +1.0
124,436 - EX31_RS17840 0.60 -0.8
124,492 + EX31_RS17840 0.63 -0.9
124,498 + EX31_RS17840 0.63 -0.0
124,498 + EX31_RS17840 0.63 -1.6
124,499 - EX31_RS17840 0.63 -0.3
124,675 + EX31_RS17840 0.71 +1.1
124,675 + EX31_RS17840 0.71 -0.3
124,675 + EX31_RS17840 0.71 -0.1
124,733 - EX31_RS17840 0.74 +0.4
124,809 - EX31_RS17840 0.78 -0.8
124,902 - EX31_RS17840 0.82 -1.6
124,970 - EX31_RS17840 0.86 -0.6
125,020 - EX31_RS17840 0.88 -0.3
125,075 + -0.6
125,111 + -0.5
125,112 - -1.1
125,135 + +0.7
125,136 - +0.7
125,136 - +0.1
125,136 - +0.7
125,136 - -0.7
125,223 + +0.1
125,223 + +0.1
125,223 + +1.7
125,223 + +0.2
125,223 + -1.3
125,223 + -0.1
125,223 + -1.1
125,224 - +3.7
125,224 - -0.3
125,224 - -0.9
125,224 - +0.6
125,224 - +0.1
125,224 - +0.7
125,224 - +2.5
125,224 - +1.1
125,224 - +0.5
125,224 - +0.4
125,224 - -0.6
125,334 + +2.3
125,335 - +1.1
125,335 - -0.3
125,430 + -1.9
125,430 + -0.3
125,430 + +3.5
125,430 + -1.3
125,430 + +0.7
125,431 - +0.7
125,431 - +0.7
125,431 - -0.3
125,431 - +0.4
125,482 + EX31_RS17845 0.12 -1.8
125,482 + EX31_RS17845 0.12 -0.3
125,483 - EX31_RS17845 0.12 -1.6
125,483 - EX31_RS17845 0.12 -0.5
125,483 - EX31_RS17845 0.12 +0.7
125,483 - EX31_RS17845 0.12 +1.3
125,651 - EX31_RS17845 0.26 +0.3
125,651 - EX31_RS17845 0.26 +0.3
125,691 + EX31_RS17845 0.30 +0.5
125,692 - EX31_RS17845 0.30 -0.3
125,748 + EX31_RS17845 0.34 +0.2
125,748 + EX31_RS17845 0.34 +1.8
125,749 - EX31_RS17845 0.34 +1.0
125,753 - EX31_RS17845 0.35 +0.1
125,754 + EX31_RS17845 0.35 -0.3
125,755 - EX31_RS17845 0.35 +1.2
125,778 + EX31_RS17845 0.37 +1.4
125,778 + EX31_RS17845 0.37 +0.7
125,779 - EX31_RS17845 0.37 +0.6
125,779 - EX31_RS17845 0.37 -1.5
126,067 - EX31_RS17845 0.61 +2.3
126,182 - EX31_RS17845 0.70 +3.0

Or see this region's nucleotide sequence