Strain Fitness in Rahnella sp. WP5 around EX31_RS17525

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17520 and EX31_RS17525 are separated by 203 nucleotidesEX31_RS17525 and EX31_RS17530 are separated by 151 nucleotidesEX31_RS17530 and EX31_RS17535 are separated by 298 nucleotides EX31_RS17520: EX31_RS17520 - C26 family cysteine hydrolase domain-containing family, at 56,093 to 57,295 _RS17520 EX31_RS17525: EX31_RS17525 - pyridoxal phosphate-dependent aminotransferase, at 57,499 to 58,707 _RS17525 EX31_RS17530: EX31_RS17530 - tRNA-Asn, at 58,859 to 58,934 _RS17530 EX31_RS17535: EX31_RS17535 - DUF1028 domain-containing protein, at 59,233 to 59,883 _RS17535 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1 2 3at 56.557 kb on + strand, within EX31_RS17520at 56.574 kb on + strand, within EX31_RS17520at 56.605 kb on + strand, within EX31_RS17520at 56.606 kb on - strand, within EX31_RS17520at 56.631 kb on - strand, within EX31_RS17520at 56.635 kb on + strand, within EX31_RS17520at 56.636 kb on - strand, within EX31_RS17520at 56.694 kb on + strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.695 kb on - strand, within EX31_RS17520at 56.702 kb on - strand, within EX31_RS17520at 56.717 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.911 kb on + strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.912 kb on - strand, within EX31_RS17520at 56.913 kb on + strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.914 kb on - strand, within EX31_RS17520at 56.939 kb on - strand, within EX31_RS17520at 56.949 kb on + strand, within EX31_RS17520at 57.042 kb on + strand, within EX31_RS17520at 57.042 kb on + strand, within EX31_RS17520at 57.043 kb on - strand, within EX31_RS17520at 57.043 kb on - strand, within EX31_RS17520at 57.250 kb on - strandat 57.284 kb on + strandat 57.285 kb on - strandat 57.287 kb on - strandat 57.287 kb on - strandat 57.382 kb on + strandat 57.595 kb on - strandat 57.637 kb on - strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.648 kb on + strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.649 kb on - strand, within EX31_RS17525at 57.677 kb on + strand, within EX31_RS17525at 57.694 kb on + strand, within EX31_RS17525at 57.742 kb on - strand, within EX31_RS17525at 57.742 kb on - strand, within EX31_RS17525at 57.748 kb on - strand, within EX31_RS17525at 57.759 kb on + strand, within EX31_RS17525at 57.760 kb on - strand, within EX31_RS17525at 57.760 kb on - strand, within EX31_RS17525at 57.886 kb on + strand, within EX31_RS17525at 58.045 kb on + strand, within EX31_RS17525at 58.046 kb on - strand, within EX31_RS17525at 58.046 kb on - strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.123 kb on + strand, within EX31_RS17525at 58.205 kb on + strand, within EX31_RS17525at 58.205 kb on + strand, within EX31_RS17525at 58.219 kb on - strand, within EX31_RS17525at 58.226 kb on - strand, within EX31_RS17525at 58.477 kb on + strand, within EX31_RS17525at 58.478 kb on - strand, within EX31_RS17525at 58.488 kb on + strand, within EX31_RS17525at 58.510 kb on - strand, within EX31_RS17525at 58.510 kb on - strand, within EX31_RS17525at 58.561 kb on + strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.562 kb on - strand, within EX31_RS17525at 58.621 kb on + strandat 58.625 kb on + strandat 58.626 kb on - strandat 58.626 kb on - strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.629 kb on + strandat 58.637 kb on - strandat 58.637 kb on - strandat 58.777 kb on + strandat 58.797 kb on + strandat 58.962 kb on + strandat 58.982 kb on + strandat 59.004 kb on - strandat 59.131 kb on + strandat 59.131 kb on + strandat 59.131 kb on + strandat 59.132 kb on - strandat 59.215 kb on - strandat 59.224 kb on + strandat 59.225 kb on - strandat 59.401 kb on - strand, within EX31_RS17535at 59.530 kb on + strand, within EX31_RS17535at 59.531 kb on - strand, within EX31_RS17535at 59.635 kb on + strand, within EX31_RS17535at 59.636 kb on - strand, within EX31_RS17535at 59.636 kb on - strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.685 kb on + strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.686 kb on - strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.687 kb on + strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535at 59.688 kb on - strand, within EX31_RS17535

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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56,557 + EX31_RS17520 0.39 -1.3
56,574 + EX31_RS17520 0.40 +0.1
56,605 + EX31_RS17520 0.43 +3.3
56,606 - EX31_RS17520 0.43 +0.2
56,631 - EX31_RS17520 0.45 -0.0
56,635 + EX31_RS17520 0.45 -2.1
56,636 - EX31_RS17520 0.45 +0.3
56,694 + EX31_RS17520 0.50 -1.1
56,695 - EX31_RS17520 0.50 -1.1
56,695 - EX31_RS17520 0.50 -0.3
56,695 - EX31_RS17520 0.50 +0.0
56,702 - EX31_RS17520 0.51 -0.7
56,717 + EX31_RS17520 0.52 -1.6
56,911 + EX31_RS17520 0.68 +1.3
56,911 + EX31_RS17520 0.68 +0.9
56,911 + EX31_RS17520 0.68 +0.1
56,911 + EX31_RS17520 0.68 -0.3
56,911 + EX31_RS17520 0.68 -0.0
56,911 + EX31_RS17520 0.68 +3.7
56,911 + EX31_RS17520 0.68 +0.3
56,911 + EX31_RS17520 0.68 +0.3
56,911 + EX31_RS17520 0.68 -0.6
56,912 - EX31_RS17520 0.68 +0.1
56,912 - EX31_RS17520 0.68 -1.4
56,912 - EX31_RS17520 0.68 +0.4
56,912 - EX31_RS17520 0.68 -0.7
56,912 - EX31_RS17520 0.68 -0.4
56,912 - EX31_RS17520 0.68 -1.0
56,912 - EX31_RS17520 0.68 -1.6
56,912 - EX31_RS17520 0.68 +0.3
56,912 - EX31_RS17520 0.68 +0.3
56,912 - EX31_RS17520 0.68 -0.4
56,912 - EX31_RS17520 0.68 +1.3
56,912 - EX31_RS17520 0.68 +1.3
56,912 - EX31_RS17520 0.68 -0.3
56,913 + EX31_RS17520 0.68 -1.3
56,914 - EX31_RS17520 0.68 -0.1
56,914 - EX31_RS17520 0.68 +0.7
56,914 - EX31_RS17520 0.68 +1.3
56,914 - EX31_RS17520 0.68 +0.0
56,914 - EX31_RS17520 0.68 -0.6
56,939 - EX31_RS17520 0.70 +0.6
56,949 + EX31_RS17520 0.71 -0.4
57,042 + EX31_RS17520 0.79 +0.1
57,042 + EX31_RS17520 0.79 +0.3
57,043 - EX31_RS17520 0.79 -2.1
57,043 - EX31_RS17520 0.79 +1.4
57,250 - -0.9
57,284 + -1.6
57,285 - +0.7
57,287 - -1.1
57,287 - -1.8
57,382 + -0.2
57,595 - -0.3
57,637 - EX31_RS17525 0.11 -0.3
57,648 + EX31_RS17525 0.12 +1.7
57,648 + EX31_RS17525 0.12 +2.0
57,648 + EX31_RS17525 0.12 +0.7
57,649 - EX31_RS17525 0.12 -0.7
57,649 - EX31_RS17525 0.12 +0.4
57,649 - EX31_RS17525 0.12 +0.7
57,677 + EX31_RS17525 0.15 +0.7
57,694 + EX31_RS17525 0.16 +1.2
57,742 - EX31_RS17525 0.20 -0.6
57,742 - EX31_RS17525 0.20 +0.2
57,748 - EX31_RS17525 0.21 +0.3
57,759 + EX31_RS17525 0.22 -0.7
57,760 - EX31_RS17525 0.22 +1.5
57,760 - EX31_RS17525 0.22 +0.3
57,886 + EX31_RS17525 0.32 +0.2
58,045 + EX31_RS17525 0.45 +0.7
58,046 - EX31_RS17525 0.45 +0.4
58,046 - EX31_RS17525 0.45 +0.7
58,123 + EX31_RS17525 0.52 -1.4
58,123 + EX31_RS17525 0.52 -0.4
58,123 + EX31_RS17525 0.52 +0.4
58,123 + EX31_RS17525 0.52 +1.5
58,205 + EX31_RS17525 0.58 -0.4
58,205 + EX31_RS17525 0.58 +1.1
58,219 - EX31_RS17525 0.60 +0.4
58,226 - EX31_RS17525 0.60 +0.7
58,477 + EX31_RS17525 0.81 +1.7
58,478 - EX31_RS17525 0.81 +1.0
58,488 + EX31_RS17525 0.82 -0.9
58,510 - EX31_RS17525 0.84 -0.1
58,510 - EX31_RS17525 0.84 -1.6
58,561 + EX31_RS17525 0.88 +0.3
58,562 - EX31_RS17525 0.88 -0.3
58,562 - EX31_RS17525 0.88 +0.7
58,562 - EX31_RS17525 0.88 +2.0
58,562 - EX31_RS17525 0.88 -2.3
58,621 + +1.6
58,625 + -0.3
58,626 - +0.6
58,626 - +0.4
58,629 + +1.2
58,629 + +0.2
58,629 + +0.3
58,629 + -0.3
58,629 + +2.7
58,637 - -0.7
58,637 - +0.5
58,777 + -1.1
58,797 + +0.7
58,962 + +1.7
58,982 + -0.1
59,004 - -1.4
59,131 + +1.7
59,131 + +1.1
59,131 + +1.5
59,132 - +1.7
59,215 - -0.3
59,224 + +1.0
59,225 - -0.3
59,401 - EX31_RS17535 0.26 +1.5
59,530 + EX31_RS17535 0.46 -0.3
59,531 - EX31_RS17535 0.46 +1.9
59,635 + EX31_RS17535 0.62 +0.7
59,636 - EX31_RS17535 0.62 +0.7
59,636 - EX31_RS17535 0.62 -0.9
59,685 + EX31_RS17535 0.69 -1.1
59,685 + EX31_RS17535 0.69 +0.7
59,685 + EX31_RS17535 0.69 -0.9
59,685 + EX31_RS17535 0.69 -0.4
59,685 + EX31_RS17535 0.69 +1.6
59,685 + EX31_RS17535 0.69 +1.1
59,685 + EX31_RS17535 0.69 +0.1
59,685 + EX31_RS17535 0.69 -0.8
59,685 + EX31_RS17535 0.69 -0.1
59,686 - EX31_RS17535 0.70 +0.2
59,686 - EX31_RS17535 0.70 -1.2
59,686 - EX31_RS17535 0.70 -0.3
59,686 - EX31_RS17535 0.70 +0.7
59,686 - EX31_RS17535 0.70 -0.9
59,686 - EX31_RS17535 0.70 +0.5
59,686 - EX31_RS17535 0.70 +0.1
59,686 - EX31_RS17535 0.70 +0.6
59,686 - EX31_RS17535 0.70 +1.3
59,686 - EX31_RS17535 0.70 +2.7
59,686 - EX31_RS17535 0.70 -1.6
59,686 - EX31_RS17535 0.70 -0.1
59,687 + EX31_RS17535 0.70 -1.1
59,687 + EX31_RS17535 0.70 -1.1
59,687 + EX31_RS17535 0.70 +0.0
59,688 - EX31_RS17535 0.70 -0.3
59,688 - EX31_RS17535 0.70 +0.4
59,688 - EX31_RS17535 0.70 -1.6

Or see this region's nucleotide sequence