Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17520 and EX31_RS17525 are separated by 203 nucleotides EX31_RS17525 and EX31_RS17530 are separated by 151 nucleotides EX31_RS17530 and EX31_RS17535 are separated by 298 nucleotides
EX31_RS17520: EX31_RS17520 - C26 family cysteine hydrolase domain-containing family, at 56,093 to 57,295
_RS17520
EX31_RS17525: EX31_RS17525 - pyridoxal phosphate-dependent aminotransferase, at 57,499 to 58,707
_RS17525
EX31_RS17530: EX31_RS17530 - tRNA-Asn, at 58,859 to 58,934
_RS17530
EX31_RS17535: EX31_RS17535 - DUF1028 domain-containing protein, at 59,233 to 59,883
_RS17535
Position (kb)
57
58
59 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 56.557 kb on + strand, within EX31_RS17520 at 56.574 kb on + strand, within EX31_RS17520 at 56.605 kb on + strand, within EX31_RS17520 at 56.606 kb on - strand, within EX31_RS17520 at 56.631 kb on - strand, within EX31_RS17520 at 56.635 kb on + strand, within EX31_RS17520 at 56.636 kb on - strand, within EX31_RS17520 at 56.694 kb on + strand, within EX31_RS17520 at 56.695 kb on - strand, within EX31_RS17520 at 56.695 kb on - strand, within EX31_RS17520 at 56.695 kb on - strand, within EX31_RS17520 at 56.702 kb on - strand, within EX31_RS17520 at 56.717 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.911 kb on + strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.912 kb on - strand, within EX31_RS17520 at 56.913 kb on + strand, within EX31_RS17520 at 56.914 kb on - strand, within EX31_RS17520 at 56.914 kb on - strand, within EX31_RS17520 at 56.914 kb on - strand, within EX31_RS17520 at 56.914 kb on - strand, within EX31_RS17520 at 56.914 kb on - strand, within EX31_RS17520 at 56.939 kb on - strand, within EX31_RS17520 at 56.949 kb on + strand, within EX31_RS17520 at 57.042 kb on + strand, within EX31_RS17520 at 57.042 kb on + strand, within EX31_RS17520 at 57.043 kb on - strand, within EX31_RS17520 at 57.043 kb on - strand, within EX31_RS17520 at 57.250 kb on - strand at 57.284 kb on + strand at 57.285 kb on - strand at 57.287 kb on - strand at 57.287 kb on - strand at 57.382 kb on + strand at 57.595 kb on - strand at 57.637 kb on - strand, within EX31_RS17525 at 57.648 kb on + strand, within EX31_RS17525 at 57.648 kb on + strand, within EX31_RS17525 at 57.648 kb on + strand, within EX31_RS17525 at 57.649 kb on - strand, within EX31_RS17525 at 57.649 kb on - strand, within EX31_RS17525 at 57.649 kb on - strand, within EX31_RS17525 at 57.677 kb on + strand, within EX31_RS17525 at 57.694 kb on + strand, within EX31_RS17525 at 57.742 kb on - strand, within EX31_RS17525 at 57.742 kb on - strand, within EX31_RS17525 at 57.748 kb on - strand, within EX31_RS17525 at 57.759 kb on + strand, within EX31_RS17525 at 57.760 kb on - strand, within EX31_RS17525 at 57.760 kb on - strand, within EX31_RS17525 at 57.886 kb on + strand, within EX31_RS17525 at 58.045 kb on + strand, within EX31_RS17525 at 58.046 kb on - strand, within EX31_RS17525 at 58.046 kb on - strand, within EX31_RS17525 at 58.123 kb on + strand, within EX31_RS17525 at 58.123 kb on + strand, within EX31_RS17525 at 58.123 kb on + strand, within EX31_RS17525 at 58.123 kb on + strand, within EX31_RS17525 at 58.205 kb on + strand, within EX31_RS17525 at 58.205 kb on + strand, within EX31_RS17525 at 58.219 kb on - strand, within EX31_RS17525 at 58.226 kb on - strand, within EX31_RS17525 at 58.477 kb on + strand, within EX31_RS17525 at 58.478 kb on - strand, within EX31_RS17525 at 58.488 kb on + strand, within EX31_RS17525 at 58.510 kb on - strand, within EX31_RS17525 at 58.510 kb on - strand, within EX31_RS17525 at 58.561 kb on + strand, within EX31_RS17525 at 58.562 kb on - strand, within EX31_RS17525 at 58.562 kb on - strand, within EX31_RS17525 at 58.562 kb on - strand, within EX31_RS17525 at 58.562 kb on - strand, within EX31_RS17525 at 58.621 kb on + strand at 58.625 kb on + strand at 58.626 kb on - strand at 58.626 kb on - strand at 58.629 kb on + strand at 58.629 kb on + strand at 58.629 kb on + strand at 58.629 kb on + strand at 58.629 kb on + strand at 58.637 kb on - strand at 58.637 kb on - strand at 58.777 kb on + strand at 58.797 kb on + strand at 58.962 kb on + strand at 58.982 kb on + strand at 59.004 kb on - strand at 59.131 kb on + strand at 59.131 kb on + strand at 59.131 kb on + strand at 59.132 kb on - strand at 59.215 kb on - strand at 59.224 kb on + strand at 59.225 kb on - strand at 59.401 kb on - strand, within EX31_RS17535 at 59.530 kb on + strand, within EX31_RS17535 at 59.531 kb on - strand, within EX31_RS17535 at 59.635 kb on + strand, within EX31_RS17535 at 59.636 kb on - strand, within EX31_RS17535 at 59.636 kb on - strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.685 kb on + strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.686 kb on - strand, within EX31_RS17535 at 59.687 kb on + strand, within EX31_RS17535 at 59.687 kb on + strand, within EX31_RS17535 at 59.687 kb on + strand, within EX31_RS17535 at 59.688 kb on - strand, within EX31_RS17535 at 59.688 kb on - strand, within EX31_RS17535 at 59.688 kb on - strand, within EX31_RS17535
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 56,557 + EX31_RS17520 0.39 -1.3 56,574 + EX31_RS17520 0.40 +0.1 56,605 + EX31_RS17520 0.43 +3.3 56,606 - EX31_RS17520 0.43 +0.2 56,631 - EX31_RS17520 0.45 -0.0 56,635 + EX31_RS17520 0.45 -2.1 56,636 - EX31_RS17520 0.45 +0.3 56,694 + EX31_RS17520 0.50 -1.1 56,695 - EX31_RS17520 0.50 -1.1 56,695 - EX31_RS17520 0.50 -0.3 56,695 - EX31_RS17520 0.50 +0.0 56,702 - EX31_RS17520 0.51 -0.7 56,717 + EX31_RS17520 0.52 -1.6 56,911 + EX31_RS17520 0.68 +1.3 56,911 + EX31_RS17520 0.68 +0.9 56,911 + EX31_RS17520 0.68 +0.1 56,911 + EX31_RS17520 0.68 -0.3 56,911 + EX31_RS17520 0.68 -0.0 56,911 + EX31_RS17520 0.68 +3.7 56,911 + EX31_RS17520 0.68 +0.3 56,911 + EX31_RS17520 0.68 +0.3 56,911 + EX31_RS17520 0.68 -0.6 56,912 - EX31_RS17520 0.68 +0.1 56,912 - EX31_RS17520 0.68 -1.4 56,912 - EX31_RS17520 0.68 +0.4 56,912 - EX31_RS17520 0.68 -0.7 56,912 - EX31_RS17520 0.68 -0.4 56,912 - EX31_RS17520 0.68 -1.0 56,912 - EX31_RS17520 0.68 -1.6 56,912 - EX31_RS17520 0.68 +0.3 56,912 - EX31_RS17520 0.68 +0.3 56,912 - EX31_RS17520 0.68 -0.4 56,912 - EX31_RS17520 0.68 +1.3 56,912 - EX31_RS17520 0.68 +1.3 56,912 - EX31_RS17520 0.68 -0.3 56,913 + EX31_RS17520 0.68 -1.3 56,914 - EX31_RS17520 0.68 -0.1 56,914 - EX31_RS17520 0.68 +0.7 56,914 - EX31_RS17520 0.68 +1.3 56,914 - EX31_RS17520 0.68 +0.0 56,914 - EX31_RS17520 0.68 -0.6 56,939 - EX31_RS17520 0.70 +0.6 56,949 + EX31_RS17520 0.71 -0.4 57,042 + EX31_RS17520 0.79 +0.1 57,042 + EX31_RS17520 0.79 +0.3 57,043 - EX31_RS17520 0.79 -2.1 57,043 - EX31_RS17520 0.79 +1.4 57,250 - -0.9 57,284 + -1.6 57,285 - +0.7 57,287 - -1.1 57,287 - -1.8 57,382 + -0.2 57,595 - -0.3 57,637 - EX31_RS17525 0.11 -0.3 57,648 + EX31_RS17525 0.12 +1.7 57,648 + EX31_RS17525 0.12 +2.0 57,648 + EX31_RS17525 0.12 +0.7 57,649 - EX31_RS17525 0.12 -0.7 57,649 - EX31_RS17525 0.12 +0.4 57,649 - EX31_RS17525 0.12 +0.7 57,677 + EX31_RS17525 0.15 +0.7 57,694 + EX31_RS17525 0.16 +1.2 57,742 - EX31_RS17525 0.20 -0.6 57,742 - EX31_RS17525 0.20 +0.2 57,748 - EX31_RS17525 0.21 +0.3 57,759 + EX31_RS17525 0.22 -0.7 57,760 - EX31_RS17525 0.22 +1.5 57,760 - EX31_RS17525 0.22 +0.3 57,886 + EX31_RS17525 0.32 +0.2 58,045 + EX31_RS17525 0.45 +0.7 58,046 - EX31_RS17525 0.45 +0.4 58,046 - EX31_RS17525 0.45 +0.7 58,123 + EX31_RS17525 0.52 -1.4 58,123 + EX31_RS17525 0.52 -0.4 58,123 + EX31_RS17525 0.52 +0.4 58,123 + EX31_RS17525 0.52 +1.5 58,205 + EX31_RS17525 0.58 -0.4 58,205 + EX31_RS17525 0.58 +1.1 58,219 - EX31_RS17525 0.60 +0.4 58,226 - EX31_RS17525 0.60 +0.7 58,477 + EX31_RS17525 0.81 +1.7 58,478 - EX31_RS17525 0.81 +1.0 58,488 + EX31_RS17525 0.82 -0.9 58,510 - EX31_RS17525 0.84 -0.1 58,510 - EX31_RS17525 0.84 -1.6 58,561 + EX31_RS17525 0.88 +0.3 58,562 - EX31_RS17525 0.88 -0.3 58,562 - EX31_RS17525 0.88 +0.7 58,562 - EX31_RS17525 0.88 +2.0 58,562 - EX31_RS17525 0.88 -2.3 58,621 + +1.6 58,625 + -0.3 58,626 - +0.6 58,626 - +0.4 58,629 + +1.2 58,629 + +0.2 58,629 + +0.3 58,629 + -0.3 58,629 + +2.7 58,637 - -0.7 58,637 - +0.5 58,777 + -1.1 58,797 + +0.7 58,962 + +1.7 58,982 + -0.1 59,004 - -1.4 59,131 + +1.7 59,131 + +1.1 59,131 + +1.5 59,132 - +1.7 59,215 - -0.3 59,224 + +1.0 59,225 - -0.3 59,401 - EX31_RS17535 0.26 +1.5 59,530 + EX31_RS17535 0.46 -0.3 59,531 - EX31_RS17535 0.46 +1.9 59,635 + EX31_RS17535 0.62 +0.7 59,636 - EX31_RS17535 0.62 +0.7 59,636 - EX31_RS17535 0.62 -0.9 59,685 + EX31_RS17535 0.69 -1.1 59,685 + EX31_RS17535 0.69 +0.7 59,685 + EX31_RS17535 0.69 -0.9 59,685 + EX31_RS17535 0.69 -0.4 59,685 + EX31_RS17535 0.69 +1.6 59,685 + EX31_RS17535 0.69 +1.1 59,685 + EX31_RS17535 0.69 +0.1 59,685 + EX31_RS17535 0.69 -0.8 59,685 + EX31_RS17535 0.69 -0.1 59,686 - EX31_RS17535 0.70 +0.2 59,686 - EX31_RS17535 0.70 -1.2 59,686 - EX31_RS17535 0.70 -0.3 59,686 - EX31_RS17535 0.70 +0.7 59,686 - EX31_RS17535 0.70 -0.9 59,686 - EX31_RS17535 0.70 +0.5 59,686 - EX31_RS17535 0.70 +0.1 59,686 - EX31_RS17535 0.70 +0.6 59,686 - EX31_RS17535 0.70 +1.3 59,686 - EX31_RS17535 0.70 +2.7 59,686 - EX31_RS17535 0.70 -1.6 59,686 - EX31_RS17535 0.70 -0.1 59,687 + EX31_RS17535 0.70 -1.1 59,687 + EX31_RS17535 0.70 -1.1 59,687 + EX31_RS17535 0.70 +0.0 59,688 - EX31_RS17535 0.70 -0.3 59,688 - EX31_RS17535 0.70 +0.4 59,688 - EX31_RS17535 0.70 -1.6
Or see this region's nucleotide sequence