Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17435 and EX31_RS17440 overlap by 4 nucleotides EX31_RS17440 and EX31_RS17445 are separated by 9 nucleotides EX31_RS17445 and EX31_RS17450 are separated by 367 nucleotides
EX31_RS17435: EX31_RS17435 - FGGY-family carbohydrate kinase, at 38,136 to 39,776
_RS17435
EX31_RS17440: EX31_RS17440 - SIS domain-containing protein, at 39,773 to 40,381
_RS17440
EX31_RS17445: EX31_RS17445 - PLP-dependent aminotransferase family protein, at 40,391 to 41,824
_RS17445
EX31_RS17450: EX31_RS17450 - ATP-independent periplasmic protein-refolding chaperone, at 42,192 to 42,701
_RS17450
Position (kb)
40
41
42 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 39.461 kb on + strand, within EX31_RS17435 at 39.461 kb on + strand, within EX31_RS17435 at 39.461 kb on + strand, within EX31_RS17435 at 39.542 kb on - strand, within EX31_RS17435 at 39.609 kb on + strand, within EX31_RS17435 at 39.683 kb on + strand at 39.690 kb on + strand at 39.690 kb on + strand at 39.690 kb on + strand at 39.690 kb on + strand at 39.691 kb on - strand at 39.691 kb on - strand at 39.693 kb on + strand at 39.693 kb on + strand at 39.693 kb on + strand at 39.693 kb on + strand at 39.694 kb on - strand at 39.694 kb on - strand at 39.694 kb on - strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.712 kb on + strand at 39.713 kb on - strand at 39.713 kb on - strand at 39.726 kb on + strand at 39.727 kb on - strand at 39.744 kb on + strand at 39.821 kb on + strand at 39.821 kb on + strand at 39.821 kb on + strand at 39.822 kb on - strand at 39.822 kb on - strand at 39.835 kb on - strand, within EX31_RS17440 at 39.843 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.865 kb on + strand, within EX31_RS17440 at 39.866 kb on - strand, within EX31_RS17440 at 39.866 kb on - strand, within EX31_RS17440 at 39.866 kb on - strand, within EX31_RS17440 at 39.866 kb on - strand, within EX31_RS17440 at 39.866 kb on - strand, within EX31_RS17440 at 39.867 kb on + strand, within EX31_RS17440 at 39.867 kb on + strand, within EX31_RS17440 at 39.867 kb on + strand, within EX31_RS17440 at 39.868 kb on - strand, within EX31_RS17440 at 39.868 kb on - strand, within EX31_RS17440 at 39.868 kb on - strand, within EX31_RS17440 at 39.958 kb on - strand, within EX31_RS17440 at 39.995 kb on + strand, within EX31_RS17440 at 39.996 kb on - strand, within EX31_RS17440 at 40.036 kb on + strand, within EX31_RS17440 at 40.036 kb on + strand, within EX31_RS17440 at 40.037 kb on - strand, within EX31_RS17440 at 40.228 kb on + strand, within EX31_RS17440 at 40.228 kb on + strand, within EX31_RS17440 at 40.228 kb on + strand, within EX31_RS17440 at 40.229 kb on - strand, within EX31_RS17440 at 40.288 kb on + strand, within EX31_RS17440 at 40.288 kb on + strand, within EX31_RS17440 at 40.288 kb on + strand, within EX31_RS17440 at 40.289 kb on - strand, within EX31_RS17440 at 40.471 kb on + strand at 40.472 kb on - strand at 40.478 kb on - strand at 40.608 kb on + strand, within EX31_RS17445 at 40.726 kb on - strand, within EX31_RS17445 at 40.756 kb on - strand, within EX31_RS17445 at 40.822 kb on + strand, within EX31_RS17445 at 40.823 kb on - strand, within EX31_RS17445 at 40.833 kb on + strand, within EX31_RS17445 at 40.834 kb on - strand, within EX31_RS17445 at 40.834 kb on - strand, within EX31_RS17445 at 40.834 kb on - strand, within EX31_RS17445 at 40.959 kb on + strand, within EX31_RS17445 at 40.972 kb on - strand, within EX31_RS17445 at 40.972 kb on - strand, within EX31_RS17445 at 40.972 kb on - strand, within EX31_RS17445 at 40.973 kb on + strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.974 kb on - strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 40.999 kb on + strand, within EX31_RS17445 at 41.000 kb on - strand, within EX31_RS17445 at 41.000 kb on - strand, within EX31_RS17445 at 41.177 kb on + strand, within EX31_RS17445 at 41.178 kb on - strand, within EX31_RS17445 at 41.204 kb on + strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.299 kb on + strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.329 kb on + strand, within EX31_RS17445 at 41.330 kb on - strand, within EX31_RS17445 at 41.344 kb on - strand, within EX31_RS17445 at 41.577 kb on + strand, within EX31_RS17445 at 41.578 kb on - strand, within EX31_RS17445 at 41.609 kb on + strand, within EX31_RS17445 at 41.609 kb on + strand, within EX31_RS17445 at 41.610 kb on - strand, within EX31_RS17445 at 41.610 kb on - strand, within EX31_RS17445 at 41.626 kb on - strand, within EX31_RS17445 at 41.679 kb on + strand, within EX31_RS17445 at 41.679 kb on + strand, within EX31_RS17445 at 41.680 kb on - strand, within EX31_RS17445 at 41.726 kb on - strand at 41.726 kb on - strand at 41.726 kb on - strand at 41.733 kb on - strand at 41.733 kb on - strand at 41.733 kb on - strand at 41.824 kb on + strand at 41.825 kb on - strand at 41.869 kb on - strand at 41.869 kb on - strand at 41.901 kb on - strand at 41.901 kb on - strand at 41.940 kb on + strand at 41.964 kb on + strand at 41.966 kb on - strand at 41.966 kb on - strand at 41.986 kb on + strand at 42.042 kb on - strand at 42.042 kb on - strand at 42.095 kb on - strand at 42.110 kb on + strand at 42.113 kb on + strand at 42.113 kb on + strand at 42.114 kb on - strand at 42.114 kb on - strand at 42.191 kb on + strand at 42.192 kb on - strand at 42.192 kb on - strand at 42.197 kb on + strand at 42.327 kb on - strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.518 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.699 kb on + strand at 42.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 39,461 + EX31_RS17435 0.81 +1.5 39,461 + EX31_RS17435 0.81 -0.9 39,461 + EX31_RS17435 0.81 -0.1 39,542 - EX31_RS17435 0.86 +0.7 39,609 + EX31_RS17435 0.90 +0.7 39,683 + +1.7 39,690 + -0.3 39,690 + +0.6 39,690 + -1.3 39,690 + +0.7 39,691 - -0.2 39,691 - +0.1 39,693 + +0.7 39,693 + +0.7 39,693 + -0.8 39,693 + +1.0 39,694 - +2.3 39,694 - +1.7 39,694 - +0.9 39,701 + +0.7 39,701 + +0.6 39,702 - +2.2 39,702 - +0.1 39,702 - -0.9 39,702 - +1.1 39,712 + -0.4 39,713 - +1.7 39,713 - -0.0 39,726 + +1.0 39,727 - +2.7 39,744 + +0.7 39,821 + +2.7 39,821 + +0.7 39,821 + -0.3 39,822 - -0.7 39,822 - -0.5 39,835 - EX31_RS17440 0.10 -0.3 39,843 + EX31_RS17440 0.11 +0.9 39,865 + EX31_RS17440 0.15 -0.3 39,865 + EX31_RS17440 0.15 -0.9 39,865 + EX31_RS17440 0.15 +1.6 39,865 + EX31_RS17440 0.15 -1.6 39,865 + EX31_RS17440 0.15 +0.2 39,865 + EX31_RS17440 0.15 +0.4 39,865 + EX31_RS17440 0.15 +1.3 39,865 + EX31_RS17440 0.15 -0.3 39,865 + EX31_RS17440 0.15 +0.2 39,865 + EX31_RS17440 0.15 -0.0 39,865 + EX31_RS17440 0.15 -2.1 39,865 + EX31_RS17440 0.15 -1.7 39,865 + EX31_RS17440 0.15 +0.7 39,866 - EX31_RS17440 0.15 -1.4 39,866 - EX31_RS17440 0.15 -1.3 39,866 - EX31_RS17440 0.15 +0.3 39,866 - EX31_RS17440 0.15 +0.2 39,866 - EX31_RS17440 0.15 +0.1 39,867 + EX31_RS17440 0.15 -0.9 39,867 + EX31_RS17440 0.15 +1.0 39,867 + EX31_RS17440 0.15 +1.6 39,868 - EX31_RS17440 0.16 -1.2 39,868 - EX31_RS17440 0.16 +0.7 39,868 - EX31_RS17440 0.16 -0.3 39,958 - EX31_RS17440 0.30 -0.7 39,995 + EX31_RS17440 0.36 -1.1 39,996 - EX31_RS17440 0.37 -0.0 40,036 + EX31_RS17440 0.43 +0.1 40,036 + EX31_RS17440 0.43 +0.4 40,037 - EX31_RS17440 0.43 -0.3 40,228 + EX31_RS17440 0.75 +0.7 40,228 + EX31_RS17440 0.75 -0.7 40,228 + EX31_RS17440 0.75 +1.7 40,229 - EX31_RS17440 0.75 -1.0 40,288 + EX31_RS17440 0.85 +1.0 40,288 + EX31_RS17440 0.85 -0.9 40,288 + EX31_RS17440 0.85 -0.1 40,289 - EX31_RS17440 0.85 -0.3 40,471 + -0.6 40,472 - +0.1 40,478 - +0.9 40,608 + EX31_RS17445 0.15 +3.0 40,726 - EX31_RS17445 0.23 +1.1 40,756 - EX31_RS17445 0.25 +1.9 40,822 + EX31_RS17445 0.30 +0.3 40,823 - EX31_RS17445 0.30 +2.6 40,833 + EX31_RS17445 0.31 -0.0 40,834 - EX31_RS17445 0.31 +2.0 40,834 - EX31_RS17445 0.31 -1.3 40,834 - EX31_RS17445 0.31 +0.7 40,959 + EX31_RS17445 0.40 +0.4 40,972 - EX31_RS17445 0.41 -0.0 40,972 - EX31_RS17445 0.41 +0.9 40,972 - EX31_RS17445 0.41 +1.0 40,973 + EX31_RS17445 0.41 +0.7 40,974 - EX31_RS17445 0.41 -1.0 40,974 - EX31_RS17445 0.41 +0.1 40,974 - EX31_RS17445 0.41 +2.1 40,974 - EX31_RS17445 0.41 +0.7 40,974 - EX31_RS17445 0.41 +1.6 40,974 - EX31_RS17445 0.41 +1.0 40,999 + EX31_RS17445 0.42 -1.1 40,999 + EX31_RS17445 0.42 +2.7 40,999 + EX31_RS17445 0.42 -2.3 40,999 + EX31_RS17445 0.42 -1.4 40,999 + EX31_RS17445 0.42 -0.1 40,999 + EX31_RS17445 0.42 +0.2 41,000 - EX31_RS17445 0.42 +1.5 41,000 - EX31_RS17445 0.42 -0.3 41,177 + EX31_RS17445 0.55 +0.7 41,178 - EX31_RS17445 0.55 +0.3 41,204 + EX31_RS17445 0.57 +0.7 41,205 - EX31_RS17445 0.57 +2.3 41,205 - EX31_RS17445 0.57 +0.7 41,205 - EX31_RS17445 0.57 +0.1 41,205 - EX31_RS17445 0.57 -0.9 41,256 - EX31_RS17445 0.60 +1.5 41,256 - EX31_RS17445 0.60 +0.7 41,256 - EX31_RS17445 0.60 +0.7 41,299 + EX31_RS17445 0.63 +1.0 41,300 - EX31_RS17445 0.63 +0.0 41,300 - EX31_RS17445 0.63 +0.5 41,300 - EX31_RS17445 0.63 -0.1 41,300 - EX31_RS17445 0.63 +1.0 41,300 - EX31_RS17445 0.63 +0.5 41,329 + EX31_RS17445 0.65 +1.3 41,330 - EX31_RS17445 0.65 -0.5 41,344 - EX31_RS17445 0.66 -1.9 41,577 + EX31_RS17445 0.83 -0.1 41,578 - EX31_RS17445 0.83 +0.9 41,609 + EX31_RS17445 0.85 +1.9 41,609 + EX31_RS17445 0.85 -0.3 41,610 - EX31_RS17445 0.85 -0.2 41,610 - EX31_RS17445 0.85 +0.3 41,626 - EX31_RS17445 0.86 +1.5 41,679 + EX31_RS17445 0.90 -1.7 41,679 + EX31_RS17445 0.90 -0.5 41,680 - EX31_RS17445 0.90 +1.3 41,726 - +2.0 41,726 - +0.7 41,726 - +1.7 41,733 - +0.7 41,733 - +1.7 41,733 - +2.3 41,824 + -0.7 41,825 - -1.3 41,869 - -1.6 41,869 - -0.1 41,901 - -0.6 41,901 - -0.1 41,940 + -1.3 41,964 + +0.7 41,966 - +1.5 41,966 - +0.3 41,986 + +3.7 42,042 - +1.0 42,042 - -0.4 42,095 - +1.1 42,110 + -0.1 42,113 + -0.4 42,113 + +1.0 42,114 - -0.3 42,114 - -0.5 42,191 + -0.3 42,192 - +0.4 42,192 - -0.3 42,197 + +2.3 42,327 - EX31_RS17450 0.26 +0.5 42,341 + EX31_RS17450 0.29 +1.7 42,341 + EX31_RS17450 0.29 +1.1 42,341 + EX31_RS17450 0.29 -0.3 42,341 + EX31_RS17450 0.29 +0.1 42,341 + EX31_RS17450 0.29 +1.1 42,341 + EX31_RS17450 0.29 -0.6 42,341 + EX31_RS17450 0.29 +0.4 42,342 - EX31_RS17450 0.29 -2.3 42,342 - EX31_RS17450 0.29 -1.0 42,342 - EX31_RS17450 0.29 +0.3 42,342 - EX31_RS17450 0.29 +0.7 42,342 - EX31_RS17450 0.29 -0.3 42,342 - EX31_RS17450 0.29 -0.5 42,342 - EX31_RS17450 0.29 +0.5 42,342 - EX31_RS17450 0.29 -0.8 42,518 + EX31_RS17450 0.64 -1.9 42,545 + EX31_RS17450 0.69 -0.6 42,545 + EX31_RS17450 0.69 +2.3 42,545 + EX31_RS17450 0.69 -1.6 42,545 + EX31_RS17450 0.69 +2.7 42,579 + EX31_RS17450 0.76 +1.7 42,579 + EX31_RS17450 0.76 -1.6 42,580 - EX31_RS17450 0.76 +0.1 42,580 - EX31_RS17450 0.76 +0.1 42,699 + +0.6 42,754 - -0.3
Or see this region's nucleotide sequence