Strain Fitness in Rahnella sp. WP5 around EX31_RS17430

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17420 and EX31_RS17425 overlap by 8 nucleotidesEX31_RS17425 and EX31_RS17430 are separated by 1 nucleotidesEX31_RS17430 and EX31_RS17435 are separated by 29 nucleotides EX31_RS17420: EX31_RS17420 - sugar ABC transporter ATP-binding protein, at 34,631 to 36,169 _RS17420 EX31_RS17425: EX31_RS17425 - ABC transporter permease, at 36,162 to 37,151 _RS17425 EX31_RS17430: EX31_RS17430 - ABC transporter permease, at 37,153 to 38,106 _RS17430 EX31_RS17435: EX31_RS17435 - FGGY-family carbohydrate kinase, at 38,136 to 39,776 _RS17435 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.167 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.170 kb on + strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.171 kb on - strandat 36.400 kb on - strand, within EX31_RS17425at 36.400 kb on - strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.414 kb on + strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.415 kb on - strand, within EX31_RS17425at 36.479 kb on - strand, within EX31_RS17425at 36.507 kb on + strand, within EX31_RS17425at 36.508 kb on - strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.530 kb on + strand, within EX31_RS17425at 36.531 kb on - strand, within EX31_RS17425at 36.531 kb on - strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.533 kb on + strand, within EX31_RS17425at 36.534 kb on - strand, within EX31_RS17425at 36.562 kb on - strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.576 kb on + strand, within EX31_RS17425at 36.577 kb on - strand, within EX31_RS17425at 36.621 kb on - strand, within EX31_RS17425at 36.632 kb on + strand, within EX31_RS17425at 36.633 kb on - strand, within EX31_RS17425at 36.633 kb on - strand, within EX31_RS17425at 36.663 kb on + strand, within EX31_RS17425at 36.669 kb on + strand, within EX31_RS17425at 36.759 kb on + strand, within EX31_RS17425at 36.839 kb on + strand, within EX31_RS17425at 36.840 kb on - strand, within EX31_RS17425at 36.884 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.902 kb on + strand, within EX31_RS17425at 36.903 kb on - strand, within EX31_RS17425at 37.049 kb on + strand, within EX31_RS17425at 37.163 kb on + strandat 37.164 kb on - strandat 37.273 kb on - strand, within EX31_RS17430at 37.490 kb on + strand, within EX31_RS17430at 37.490 kb on + strand, within EX31_RS17430at 37.495 kb on - strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.513 kb on + strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.514 kb on - strand, within EX31_RS17430at 37.515 kb on + strand, within EX31_RS17430at 37.560 kb on + strand, within EX31_RS17430at 37.560 kb on + strand, within EX31_RS17430at 37.575 kb on + strand, within EX31_RS17430at 37.575 kb on + strand, within EX31_RS17430at 37.739 kb on - strand, within EX31_RS17430at 37.785 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.810 kb on + strand, within EX31_RS17430at 37.811 kb on - strand, within EX31_RS17430at 37.885 kb on + strand, within EX31_RS17430at 37.898 kb on - strand, within EX31_RS17430at 37.898 kb on - strand, within EX31_RS17430at 37.907 kb on + strand, within EX31_RS17430at 37.938 kb on + strand, within EX31_RS17430at 37.976 kb on + strand, within EX31_RS17430at 37.976 kb on + strand, within EX31_RS17430at 37.977 kb on - strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 37.979 kb on + strand, within EX31_RS17430at 38.038 kb on + strandat 38.038 kb on + strandat 38.164 kb on + strandat 38.164 kb on + strandat 38.237 kb on + strandat 38.238 kb on - strandat 38.399 kb on + strand, within EX31_RS17435at 38.453 kb on + strand, within EX31_RS17435at 38.480 kb on + strand, within EX31_RS17435at 38.540 kb on + strand, within EX31_RS17435at 38.589 kb on - strand, within EX31_RS17435at 38.684 kb on + strand, within EX31_RS17435at 38.685 kb on - strand, within EX31_RS17435at 38.685 kb on - strand, within EX31_RS17435at 38.693 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.703 kb on + strand, within EX31_RS17435at 38.704 kb on - strand, within EX31_RS17435at 38.704 kb on - strand, within EX31_RS17435at 38.704 kb on - strand, within EX31_RS17435at 38.704 kb on - strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 38.736 kb on + strand, within EX31_RS17435at 39.006 kb on - strand, within EX31_RS17435at 39.006 kb on - strand, within EX31_RS17435at 39.030 kb on + strand, within EX31_RS17435at 39.032 kb on + strand, within EX31_RS17435at 39.033 kb on - strand, within EX31_RS17435at 39.054 kb on + strand, within EX31_RS17435at 39.055 kb on - strand, within EX31_RS17435at 39.055 kb on - strand, within EX31_RS17435at 39.057 kb on + strand, within EX31_RS17435at 39.058 kb on - strand, within EX31_RS17435at 39.079 kb on - strand, within EX31_RS17435at 39.079 kb on - strand, within EX31_RS17435

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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36,167 + +0.7
36,170 + -0.1
36,170 + +0.7
36,170 + +2.3
36,170 + -0.4
36,170 + +0.1
36,170 + -0.1
36,171 - +1.6
36,171 - +0.7
36,171 - +1.1
36,171 - +1.3
36,171 - -0.3
36,171 - +0.7
36,400 - EX31_RS17425 0.24 +0.9
36,400 - EX31_RS17425 0.24 +1.5
36,414 + EX31_RS17425 0.25 -0.0
36,414 + EX31_RS17425 0.25 -0.3
36,414 + EX31_RS17425 0.25 -0.7
36,414 + EX31_RS17425 0.25 +0.6
36,414 + EX31_RS17425 0.25 +1.9
36,415 - EX31_RS17425 0.26 -2.1
36,415 - EX31_RS17425 0.26 +0.5
36,415 - EX31_RS17425 0.26 -0.3
36,415 - EX31_RS17425 0.26 +0.4
36,479 - EX31_RS17425 0.32 -1.4
36,507 + EX31_RS17425 0.35 -0.1
36,508 - EX31_RS17425 0.35 -0.6
36,530 + EX31_RS17425 0.37 -0.6
36,530 + EX31_RS17425 0.37 +1.7
36,530 + EX31_RS17425 0.37 +1.3
36,531 - EX31_RS17425 0.37 -0.3
36,531 - EX31_RS17425 0.37 +0.7
36,533 + EX31_RS17425 0.37 +1.5
36,533 + EX31_RS17425 0.37 -1.0
36,533 + EX31_RS17425 0.37 +0.3
36,534 - EX31_RS17425 0.38 -0.9
36,562 - EX31_RS17425 0.40 +0.1
36,576 + EX31_RS17425 0.42 -1.3
36,576 + EX31_RS17425 0.42 +0.1
36,576 + EX31_RS17425 0.42 +0.2
36,576 + EX31_RS17425 0.42 +2.3
36,576 + EX31_RS17425 0.42 -0.6
36,577 - EX31_RS17425 0.42 -0.3
36,621 - EX31_RS17425 0.46 +1.4
36,632 + EX31_RS17425 0.47 +0.2
36,633 - EX31_RS17425 0.48 -0.3
36,633 - EX31_RS17425 0.48 +0.7
36,663 + EX31_RS17425 0.51 -1.3
36,669 + EX31_RS17425 0.51 +0.2
36,759 + EX31_RS17425 0.60 -1.3
36,839 + EX31_RS17425 0.68 +1.7
36,840 - EX31_RS17425 0.68 +0.6
36,884 + EX31_RS17425 0.73 -1.9
36,902 + EX31_RS17425 0.75 +0.7
36,902 + EX31_RS17425 0.75 +0.7
36,902 + EX31_RS17425 0.75 -0.5
36,902 + EX31_RS17425 0.75 +0.7
36,902 + EX31_RS17425 0.75 -0.3
36,903 - EX31_RS17425 0.75 +1.3
37,049 + EX31_RS17425 0.90 -0.7
37,163 + +0.7
37,164 - +0.7
37,273 - EX31_RS17430 0.13 +0.3
37,490 + EX31_RS17430 0.35 -0.1
37,490 + EX31_RS17430 0.35 +1.9
37,495 - EX31_RS17430 0.36 +0.2
37,513 + EX31_RS17430 0.38 -1.9
37,513 + EX31_RS17430 0.38 +0.7
37,513 + EX31_RS17430 0.38 +0.1
37,513 + EX31_RS17430 0.38 -0.1
37,514 - EX31_RS17430 0.38 -0.1
37,514 - EX31_RS17430 0.38 +1.9
37,514 - EX31_RS17430 0.38 +1.6
37,514 - EX31_RS17430 0.38 -0.9
37,514 - EX31_RS17430 0.38 -0.6
37,514 - EX31_RS17430 0.38 +0.7
37,514 - EX31_RS17430 0.38 +1.3
37,514 - EX31_RS17430 0.38 +0.7
37,514 - EX31_RS17430 0.38 +0.7
37,514 - EX31_RS17430 0.38 -0.5
37,515 + EX31_RS17430 0.38 +2.3
37,560 + EX31_RS17430 0.43 +0.6
37,560 + EX31_RS17430 0.43 -1.3
37,575 + EX31_RS17430 0.44 -1.4
37,575 + EX31_RS17430 0.44 +0.7
37,739 - EX31_RS17430 0.61 +0.0
37,785 + EX31_RS17430 0.66 +1.3
37,810 + EX31_RS17430 0.69 -1.5
37,810 + EX31_RS17430 0.69 +0.1
37,810 + EX31_RS17430 0.69 -0.6
37,811 - EX31_RS17430 0.69 -0.5
37,885 + EX31_RS17430 0.77 -2.1
37,898 - EX31_RS17430 0.78 +1.5
37,898 - EX31_RS17430 0.78 -0.6
37,907 + EX31_RS17430 0.79 -1.0
37,938 + EX31_RS17430 0.82 +0.5
37,976 + EX31_RS17430 0.86 -1.0
37,976 + EX31_RS17430 0.86 +0.7
37,977 - EX31_RS17430 0.86 +3.0
37,979 + EX31_RS17430 0.87 -0.1
37,979 + EX31_RS17430 0.87 +0.3
37,979 + EX31_RS17430 0.87 -0.9
37,979 + EX31_RS17430 0.87 -0.3
38,038 + +1.5
38,038 + -0.9
38,164 + +1.3
38,164 + +0.3
38,237 + -0.3
38,238 - +0.1
38,399 + EX31_RS17435 0.16 +2.0
38,453 + EX31_RS17435 0.19 +1.3
38,480 + EX31_RS17435 0.21 -0.9
38,540 + EX31_RS17435 0.25 +2.4
38,589 - EX31_RS17435 0.28 +2.7
38,684 + EX31_RS17435 0.33 +1.7
38,685 - EX31_RS17435 0.33 +1.1
38,685 - EX31_RS17435 0.33 +1.2
38,693 + EX31_RS17435 0.34 +0.6
38,703 + EX31_RS17435 0.35 +0.7
38,703 + EX31_RS17435 0.35 +0.7
38,703 + EX31_RS17435 0.35 +1.2
38,703 + EX31_RS17435 0.35 +1.7
38,703 + EX31_RS17435 0.35 +1.0
38,703 + EX31_RS17435 0.35 -2.3
38,703 + EX31_RS17435 0.35 +0.3
38,703 + EX31_RS17435 0.35 -0.2
38,703 + EX31_RS17435 0.35 +1.0
38,703 + EX31_RS17435 0.35 +3.6
38,703 + EX31_RS17435 0.35 -1.3
38,703 + EX31_RS17435 0.35 -1.6
38,704 - EX31_RS17435 0.35 +0.8
38,704 - EX31_RS17435 0.35 -0.6
38,704 - EX31_RS17435 0.35 -0.9
38,704 - EX31_RS17435 0.35 +0.7
38,736 + EX31_RS17435 0.37 +1.9
38,736 + EX31_RS17435 0.37 -0.1
38,736 + EX31_RS17435 0.37 +1.5
38,736 + EX31_RS17435 0.37 +0.0
38,736 + EX31_RS17435 0.37 +0.9
38,736 + EX31_RS17435 0.37 +0.6
39,006 - EX31_RS17435 0.53 -0.4
39,006 - EX31_RS17435 0.53 +0.4
39,030 + EX31_RS17435 0.54 -0.5
39,032 + EX31_RS17435 0.55 +0.4
39,033 - EX31_RS17435 0.55 -1.3
39,054 + EX31_RS17435 0.56 -0.6
39,055 - EX31_RS17435 0.56 +1.2
39,055 - EX31_RS17435 0.56 +0.5
39,057 + EX31_RS17435 0.56 +1.1
39,058 - EX31_RS17435 0.56 -0.3
39,079 - EX31_RS17435 0.57 +0.1
39,079 - EX31_RS17435 0.57 +2.5

Or see this region's nucleotide sequence