Strain Fitness in Rahnella sp. WP5 around EX31_RS17305

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17295 and EX31_RS17300 are separated by 309 nucleotidesEX31_RS17300 and EX31_RS17305 are separated by 168 nucleotidesEX31_RS17305 and EX31_RS17310 are separated by 113 nucleotides EX31_RS17295: EX31_RS17295 - hypothetical protein, at 8,650 to 8,853 _RS17295 EX31_RS17300: EX31_RS17300 - hypothetical protein, at 9,163 to 9,666 _RS17300 EX31_RS17305: EX31_RS17305 - copper homeostasis protein CutC, at 9,835 to 10,593 _RS17305 EX31_RS17310: EX31_RS17310 - putative C-S lyase, at 10,707 to 11,855 _RS17310 Position (kb) 9 10 11Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 8.903 kb on + strandat 8.903 kb on + strandat 8.904 kb on - strandat 8.905 kb on + strandat 8.906 kb on - strandat 8.937 kb on + strandat 8.963 kb on - strandat 9.241 kb on - strand, within EX31_RS17300at 9.247 kb on - strand, within EX31_RS17300at 9.247 kb on - strand, within EX31_RS17300at 9.315 kb on - strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.323 kb on + strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.324 kb on - strand, within EX31_RS17300at 9.441 kb on + strand, within EX31_RS17300at 9.464 kb on + strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.465 kb on - strand, within EX31_RS17300at 9.617 kb on - strandat 9.628 kb on - strandat 9.628 kb on - strandat 9.719 kb on + strandat 9.779 kb on + strandat 9.834 kb on - strandat 9.834 kb on - strandat 10.010 kb on - strand, within EX31_RS17305at 10.010 kb on - strand, within EX31_RS17305at 10.075 kb on - strand, within EX31_RS17305at 10.077 kb on + strand, within EX31_RS17305at 10.077 kb on + strand, within EX31_RS17305at 10.077 kb on + strand, within EX31_RS17305at 10.078 kb on - strand, within EX31_RS17305at 10.078 kb on - strand, within EX31_RS17305at 10.078 kb on - strand, within EX31_RS17305at 10.078 kb on - strand, within EX31_RS17305at 10.078 kb on - strand, within EX31_RS17305at 10.121 kb on - strand, within EX31_RS17305at 10.287 kb on + strand, within EX31_RS17305at 10.288 kb on - strand, within EX31_RS17305at 10.293 kb on + strand, within EX31_RS17305at 10.293 kb on + strand, within EX31_RS17305at 10.394 kb on + strand, within EX31_RS17305at 10.433 kb on - strand, within EX31_RS17305at 10.433 kb on - strand, within EX31_RS17305at 10.433 kb on - strand, within EX31_RS17305at 10.475 kb on + strand, within EX31_RS17305at 10.476 kb on - strand, within EX31_RS17305at 10.476 kb on - strand, within EX31_RS17305at 10.476 kb on - strand, within EX31_RS17305at 10.569 kb on - strandat 10.569 kb on - strandat 10.582 kb on + strandat 10.582 kb on + strandat 10.583 kb on - strandat 10.588 kb on - strandat 10.610 kb on - strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.617 kb on + strandat 10.618 kb on - strandat 10.618 kb on - strandat 10.618 kb on - strandat 10.618 kb on - strandat 10.618 kb on - strandat 10.622 kb on + strandat 10.622 kb on + strandat 10.623 kb on - strandat 10.638 kb on - strandat 10.655 kb on - strandat 10.655 kb on - strandat 10.702 kb on + strandat 10.702 kb on + strandat 10.703 kb on - strandat 10.703 kb on - strandat 10.706 kb on + strandat 10.706 kb on + strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.707 kb on - strandat 10.726 kb on + strandat 10.727 kb on - strandat 10.727 kb on - strandat 10.752 kb on - strandat 10.752 kb on - strandat 10.757 kb on + strandat 10.758 kb on - strandat 10.766 kb on + strandat 10.767 kb on - strandat 10.770 kb on + strandat 10.771 kb on - strandat 10.916 kb on - strand, within EX31_RS17310at 10.950 kb on - strand, within EX31_RS17310at 10.994 kb on - strand, within EX31_RS17310at 11.100 kb on - strand, within EX31_RS17310at 11.108 kb on + strand, within EX31_RS17310at 11.108 kb on + strand, within EX31_RS17310at 11.113 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.164 kb on + strand, within EX31_RS17310at 11.206 kb on - strand, within EX31_RS17310at 11.208 kb on - strand, within EX31_RS17310at 11.226 kb on + strand, within EX31_RS17310at 11.442 kb on - strand, within EX31_RS17310at 11.442 kb on - strand, within EX31_RS17310at 11.517 kb on + strand, within EX31_RS17310at 11.517 kb on + strand, within EX31_RS17310at 11.518 kb on - strand, within EX31_RS17310at 11.562 kb on - strand, within EX31_RS17310at 11.577 kb on + strand, within EX31_RS17310at 11.578 kb on - strand, within EX31_RS17310

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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8,903 + -1.0
8,903 + -1.1
8,904 - +0.7
8,905 + +1.1
8,906 - +2.7
8,937 + +1.3
8,963 - -0.9
9,241 - EX31_RS17300 0.15 +0.7
9,247 - EX31_RS17300 0.17 +0.7
9,247 - EX31_RS17300 0.17 -1.9
9,315 - EX31_RS17300 0.30 +0.1
9,323 + EX31_RS17300 0.32 +0.7
9,323 + EX31_RS17300 0.32 +0.7
9,323 + EX31_RS17300 0.32 -0.6
9,324 - EX31_RS17300 0.32 -0.1
9,324 - EX31_RS17300 0.32 +1.3
9,324 - EX31_RS17300 0.32 +0.3
9,324 - EX31_RS17300 0.32 -1.5
9,441 + EX31_RS17300 0.55 +0.7
9,464 + EX31_RS17300 0.60 +1.5
9,465 - EX31_RS17300 0.60 -1.1
9,465 - EX31_RS17300 0.60 +3.0
9,465 - EX31_RS17300 0.60 -0.4
9,465 - EX31_RS17300 0.60 +0.2
9,617 - +0.0
9,628 - -2.7
9,628 - +0.7
9,719 + -0.3
9,779 + +0.7
9,834 - +0.9
9,834 - -1.3
10,010 - EX31_RS17305 0.23 -2.4
10,010 - EX31_RS17305 0.23 -0.3
10,075 - EX31_RS17305 0.32 -0.9
10,077 + EX31_RS17305 0.32 -2.4
10,077 + EX31_RS17305 0.32 +0.5
10,077 + EX31_RS17305 0.32 -1.6
10,078 - EX31_RS17305 0.32 +1.1
10,078 - EX31_RS17305 0.32 -1.6
10,078 - EX31_RS17305 0.32 -1.3
10,078 - EX31_RS17305 0.32 -1.6
10,078 - EX31_RS17305 0.32 -2.3
10,121 - EX31_RS17305 0.38 -2.9
10,287 + EX31_RS17305 0.60 -0.3
10,288 - EX31_RS17305 0.60 -1.7
10,293 + EX31_RS17305 0.60 -3.1
10,293 + EX31_RS17305 0.60 -1.6
10,394 + EX31_RS17305 0.74 -0.7
10,433 - EX31_RS17305 0.79 -0.4
10,433 - EX31_RS17305 0.79 -1.3
10,433 - EX31_RS17305 0.79 -0.9
10,475 + EX31_RS17305 0.84 +0.6
10,476 - EX31_RS17305 0.84 +0.5
10,476 - EX31_RS17305 0.84 +2.3
10,476 - EX31_RS17305 0.84 -3.8
10,569 - +0.4
10,569 - +0.3
10,582 + -1.3
10,582 + -0.9
10,583 - -0.3
10,588 - +0.7
10,610 - -0.0
10,617 + -0.6
10,617 + -0.8
10,617 + -0.0
10,617 + +0.6
10,617 + +1.2
10,617 + +0.8
10,617 + +0.7
10,618 - +0.1
10,618 - -0.0
10,618 - -0.8
10,618 - +1.1
10,618 - +2.7
10,622 + -1.3
10,622 + -1.4
10,623 - +0.3
10,638 - -1.3
10,655 - +0.7
10,655 - -0.1
10,702 + -1.1
10,702 + +0.1
10,703 - +1.4
10,703 - -0.1
10,706 + -1.1
10,706 + -2.1
10,707 - -0.9
10,707 - +0.7
10,707 - +0.6
10,707 - +1.9
10,707 - -0.3
10,707 - +1.0
10,707 - +0.7
10,726 + -0.7
10,727 - -1.3
10,727 - -0.3
10,752 - +0.3
10,752 - -0.9
10,757 + -1.4
10,758 - +0.4
10,766 + -0.3
10,767 - -0.9
10,770 + +0.5
10,771 - +1.5
10,916 - EX31_RS17310 0.18 +0.1
10,950 - EX31_RS17310 0.21 +0.1
10,994 - EX31_RS17310 0.25 +1.3
11,100 - EX31_RS17310 0.34 +1.5
11,108 + EX31_RS17310 0.35 -0.9
11,108 + EX31_RS17310 0.35 +0.5
11,113 + EX31_RS17310 0.35 -0.3
11,164 + EX31_RS17310 0.40 +0.7
11,164 + EX31_RS17310 0.40 +1.3
11,164 + EX31_RS17310 0.40 -0.6
11,164 + EX31_RS17310 0.40 +1.5
11,206 - EX31_RS17310 0.43 +0.2
11,208 - EX31_RS17310 0.44 +0.2
11,226 + EX31_RS17310 0.45 +0.6
11,442 - EX31_RS17310 0.64 -0.0
11,442 - EX31_RS17310 0.64 +1.7
11,517 + EX31_RS17310 0.70 -0.3
11,517 + EX31_RS17310 0.70 +0.0
11,518 - EX31_RS17310 0.71 +0.1
11,562 - EX31_RS17310 0.74 -0.1
11,577 + EX31_RS17310 0.76 -1.3
11,578 - EX31_RS17310 0.76 -0.2

Or see this region's nucleotide sequence