Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17295 and EX31_RS17300 are separated by 309 nucleotides EX31_RS17300 and EX31_RS17305 are separated by 168 nucleotides EX31_RS17305 and EX31_RS17310 are separated by 113 nucleotides
EX31_RS17295: EX31_RS17295 - hypothetical protein, at 8,650 to 8,853
_RS17295
EX31_RS17300: EX31_RS17300 - hypothetical protein, at 9,163 to 9,666
_RS17300
EX31_RS17305: EX31_RS17305 - copper homeostasis protein CutC, at 9,835 to 10,593
_RS17305
EX31_RS17310: EX31_RS17310 - putative C-S lyase, at 10,707 to 11,855
_RS17310
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 8.903 kb on + strand at 8.903 kb on + strand at 8.904 kb on - strand at 8.905 kb on + strand at 8.906 kb on - strand at 8.937 kb on + strand at 8.963 kb on - strand at 9.241 kb on - strand, within EX31_RS17300 at 9.247 kb on - strand, within EX31_RS17300 at 9.247 kb on - strand, within EX31_RS17300 at 9.315 kb on - strand, within EX31_RS17300 at 9.323 kb on + strand, within EX31_RS17300 at 9.323 kb on + strand, within EX31_RS17300 at 9.323 kb on + strand, within EX31_RS17300 at 9.324 kb on - strand, within EX31_RS17300 at 9.324 kb on - strand, within EX31_RS17300 at 9.324 kb on - strand, within EX31_RS17300 at 9.324 kb on - strand, within EX31_RS17300 at 9.441 kb on + strand, within EX31_RS17300 at 9.464 kb on + strand, within EX31_RS17300 at 9.465 kb on - strand, within EX31_RS17300 at 9.465 kb on - strand, within EX31_RS17300 at 9.465 kb on - strand, within EX31_RS17300 at 9.465 kb on - strand, within EX31_RS17300 at 9.617 kb on - strand at 9.628 kb on - strand at 9.628 kb on - strand at 9.719 kb on + strand at 9.779 kb on + strand at 9.834 kb on - strand at 9.834 kb on - strand at 10.010 kb on - strand, within EX31_RS17305 at 10.010 kb on - strand, within EX31_RS17305 at 10.075 kb on - strand, within EX31_RS17305 at 10.077 kb on + strand, within EX31_RS17305 at 10.077 kb on + strand, within EX31_RS17305 at 10.077 kb on + strand, within EX31_RS17305 at 10.078 kb on - strand, within EX31_RS17305 at 10.078 kb on - strand, within EX31_RS17305 at 10.078 kb on - strand, within EX31_RS17305 at 10.078 kb on - strand, within EX31_RS17305 at 10.078 kb on - strand, within EX31_RS17305 at 10.121 kb on - strand, within EX31_RS17305 at 10.287 kb on + strand, within EX31_RS17305 at 10.288 kb on - strand, within EX31_RS17305 at 10.293 kb on + strand, within EX31_RS17305 at 10.293 kb on + strand, within EX31_RS17305 at 10.394 kb on + strand, within EX31_RS17305 at 10.433 kb on - strand, within EX31_RS17305 at 10.433 kb on - strand, within EX31_RS17305 at 10.433 kb on - strand, within EX31_RS17305 at 10.475 kb on + strand, within EX31_RS17305 at 10.476 kb on - strand, within EX31_RS17305 at 10.476 kb on - strand, within EX31_RS17305 at 10.476 kb on - strand, within EX31_RS17305 at 10.569 kb on - strand at 10.569 kb on - strand at 10.582 kb on + strand at 10.582 kb on + strand at 10.583 kb on - strand at 10.588 kb on - strand at 10.610 kb on - strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.617 kb on + strand at 10.618 kb on - strand at 10.618 kb on - strand at 10.618 kb on - strand at 10.618 kb on - strand at 10.618 kb on - strand at 10.622 kb on + strand at 10.622 kb on + strand at 10.623 kb on - strand at 10.638 kb on - strand at 10.655 kb on - strand at 10.655 kb on - strand at 10.702 kb on + strand at 10.702 kb on + strand at 10.703 kb on - strand at 10.703 kb on - strand at 10.706 kb on + strand at 10.706 kb on + strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.707 kb on - strand at 10.726 kb on + strand at 10.727 kb on - strand at 10.727 kb on - strand at 10.752 kb on - strand at 10.752 kb on - strand at 10.757 kb on + strand at 10.758 kb on - strand at 10.766 kb on + strand at 10.767 kb on - strand at 10.770 kb on + strand at 10.771 kb on - strand at 10.916 kb on - strand, within EX31_RS17310 at 10.950 kb on - strand, within EX31_RS17310 at 10.994 kb on - strand, within EX31_RS17310 at 11.100 kb on - strand, within EX31_RS17310 at 11.108 kb on + strand, within EX31_RS17310 at 11.108 kb on + strand, within EX31_RS17310 at 11.113 kb on + strand, within EX31_RS17310 at 11.164 kb on + strand, within EX31_RS17310 at 11.164 kb on + strand, within EX31_RS17310 at 11.164 kb on + strand, within EX31_RS17310 at 11.164 kb on + strand, within EX31_RS17310 at 11.206 kb on - strand, within EX31_RS17310 at 11.208 kb on - strand, within EX31_RS17310 at 11.226 kb on + strand, within EX31_RS17310 at 11.442 kb on - strand, within EX31_RS17310 at 11.442 kb on - strand, within EX31_RS17310 at 11.517 kb on + strand, within EX31_RS17310 at 11.517 kb on + strand, within EX31_RS17310 at 11.518 kb on - strand, within EX31_RS17310 at 11.562 kb on - strand, within EX31_RS17310 at 11.577 kb on + strand, within EX31_RS17310 at 11.578 kb on - strand, within EX31_RS17310
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 8,903 + -1.0 8,903 + -1.1 8,904 - +0.7 8,905 + +1.1 8,906 - +2.7 8,937 + +1.3 8,963 - -0.9 9,241 - EX31_RS17300 0.15 +0.7 9,247 - EX31_RS17300 0.17 +0.7 9,247 - EX31_RS17300 0.17 -1.9 9,315 - EX31_RS17300 0.30 +0.1 9,323 + EX31_RS17300 0.32 +0.7 9,323 + EX31_RS17300 0.32 +0.7 9,323 + EX31_RS17300 0.32 -0.6 9,324 - EX31_RS17300 0.32 -0.1 9,324 - EX31_RS17300 0.32 +1.3 9,324 - EX31_RS17300 0.32 +0.3 9,324 - EX31_RS17300 0.32 -1.5 9,441 + EX31_RS17300 0.55 +0.7 9,464 + EX31_RS17300 0.60 +1.5 9,465 - EX31_RS17300 0.60 -1.1 9,465 - EX31_RS17300 0.60 +3.0 9,465 - EX31_RS17300 0.60 -0.4 9,465 - EX31_RS17300 0.60 +0.2 9,617 - +0.0 9,628 - -2.7 9,628 - +0.7 9,719 + -0.3 9,779 + +0.7 9,834 - +0.9 9,834 - -1.3 10,010 - EX31_RS17305 0.23 -2.4 10,010 - EX31_RS17305 0.23 -0.3 10,075 - EX31_RS17305 0.32 -0.9 10,077 + EX31_RS17305 0.32 -2.4 10,077 + EX31_RS17305 0.32 +0.5 10,077 + EX31_RS17305 0.32 -1.6 10,078 - EX31_RS17305 0.32 +1.1 10,078 - EX31_RS17305 0.32 -1.6 10,078 - EX31_RS17305 0.32 -1.3 10,078 - EX31_RS17305 0.32 -1.6 10,078 - EX31_RS17305 0.32 -2.3 10,121 - EX31_RS17305 0.38 -2.9 10,287 + EX31_RS17305 0.60 -0.3 10,288 - EX31_RS17305 0.60 -1.7 10,293 + EX31_RS17305 0.60 -3.1 10,293 + EX31_RS17305 0.60 -1.6 10,394 + EX31_RS17305 0.74 -0.7 10,433 - EX31_RS17305 0.79 -0.4 10,433 - EX31_RS17305 0.79 -1.3 10,433 - EX31_RS17305 0.79 -0.9 10,475 + EX31_RS17305 0.84 +0.6 10,476 - EX31_RS17305 0.84 +0.5 10,476 - EX31_RS17305 0.84 +2.3 10,476 - EX31_RS17305 0.84 -3.8 10,569 - +0.4 10,569 - +0.3 10,582 + -1.3 10,582 + -0.9 10,583 - -0.3 10,588 - +0.7 10,610 - -0.0 10,617 + -0.6 10,617 + -0.8 10,617 + -0.0 10,617 + +0.6 10,617 + +1.2 10,617 + +0.8 10,617 + +0.7 10,618 - +0.1 10,618 - -0.0 10,618 - -0.8 10,618 - +1.1 10,618 - +2.7 10,622 + -1.3 10,622 + -1.4 10,623 - +0.3 10,638 - -1.3 10,655 - +0.7 10,655 - -0.1 10,702 + -1.1 10,702 + +0.1 10,703 - +1.4 10,703 - -0.1 10,706 + -1.1 10,706 + -2.1 10,707 - -0.9 10,707 - +0.7 10,707 - +0.6 10,707 - +1.9 10,707 - -0.3 10,707 - +1.0 10,707 - +0.7 10,726 + -0.7 10,727 - -1.3 10,727 - -0.3 10,752 - +0.3 10,752 - -0.9 10,757 + -1.4 10,758 - +0.4 10,766 + -0.3 10,767 - -0.9 10,770 + +0.5 10,771 - +1.5 10,916 - EX31_RS17310 0.18 +0.1 10,950 - EX31_RS17310 0.21 +0.1 10,994 - EX31_RS17310 0.25 +1.3 11,100 - EX31_RS17310 0.34 +1.5 11,108 + EX31_RS17310 0.35 -0.9 11,108 + EX31_RS17310 0.35 +0.5 11,113 + EX31_RS17310 0.35 -0.3 11,164 + EX31_RS17310 0.40 +0.7 11,164 + EX31_RS17310 0.40 +1.3 11,164 + EX31_RS17310 0.40 -0.6 11,164 + EX31_RS17310 0.40 +1.5 11,206 - EX31_RS17310 0.43 +0.2 11,208 - EX31_RS17310 0.44 +0.2 11,226 + EX31_RS17310 0.45 +0.6 11,442 - EX31_RS17310 0.64 -0.0 11,442 - EX31_RS17310 0.64 +1.7 11,517 + EX31_RS17310 0.70 -0.3 11,517 + EX31_RS17310 0.70 +0.0 11,518 - EX31_RS17310 0.71 +0.1 11,562 - EX31_RS17310 0.74 -0.1 11,577 + EX31_RS17310 0.76 -1.3 11,578 - EX31_RS17310 0.76 -0.2
Or see this region's nucleotide sequence