Strain Fitness in Rahnella sp. WP5 around EX31_RS15520

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS26020 and EX31_RS15520 are separated by 300 nucleotidesEX31_RS15520 and EX31_RS15525 are separated by 369 nucleotides EX31_RS26020: EX31_RS26020 - IS110 family transposase, at 1 to 151 _RS26020 EX31_RS15520: EX31_RS15520 - pyridoxal phosphate-dependent aminotransferase, at 452 to 1,657 _RS15520 EX31_RS15525: EX31_RS15525 - nitrogen assimilation transcriptional regulator, at 2,027 to 2,950 _RS15525 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.454 kb on - strandat 0.454 kb on - strandat 0.748 kb on - strand, within EX31_RS15520at 0.871 kb on + strand, within EX31_RS15520at 1.004 kb on - strand, within EX31_RS15520at 1.005 kb on + strand, within EX31_RS15520at 1.005 kb on + strand, within EX31_RS15520at 1.039 kb on - strand, within EX31_RS15520at 1.039 kb on - strand, within EX31_RS15520at 1.082 kb on + strand, within EX31_RS15520at 1.082 kb on + strand, within EX31_RS15520at 1.275 kb on + strand, within EX31_RS15520at 1.276 kb on - strand, within EX31_RS15520at 1.276 kb on - strand, within EX31_RS15520at 1.392 kb on + strand, within EX31_RS15520at 1.393 kb on - strand, within EX31_RS15520at 1.546 kb on + strandat 1.690 kb on - strandat 1.729 kb on + strandat 1.729 kb on + strandat 1.730 kb on - strandat 1.778 kb on - strandat 1.888 kb on - strandat 1.896 kb on + strandat 1.952 kb on - strandat 1.987 kb on + strandat 1.987 kb on + strandat 1.988 kb on - strandat 1.988 kb on - strandat 1.991 kb on + strandat 2.220 kb on - strand, within EX31_RS15525at 2.501 kb on - strand, within EX31_RS15525at 2.501 kb on - strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.591 kb on + strand, within EX31_RS15525at 2.592 kb on - strand, within EX31_RS15525at 2.592 kb on - strand, within EX31_RS15525

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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454 - -0.6
454 - -1.4
748 - EX31_RS15520 0.25 -0.7
871 + EX31_RS15520 0.35 -1.3
1,004 - EX31_RS15520 0.46 +0.7
1,005 + EX31_RS15520 0.46 -1.3
1,005 + EX31_RS15520 0.46 -0.0
1,039 - EX31_RS15520 0.49 -0.6
1,039 - EX31_RS15520 0.49 -1.3
1,082 + EX31_RS15520 0.52 +0.7
1,082 + EX31_RS15520 0.52 +0.0
1,275 + EX31_RS15520 0.68 +0.0
1,276 - EX31_RS15520 0.68 +0.2
1,276 - EX31_RS15520 0.68 -0.3
1,392 + EX31_RS15520 0.78 +0.7
1,393 - EX31_RS15520 0.78 +0.2
1,546 + -0.0
1,690 - +0.3
1,729 + -0.2
1,729 + +2.5
1,730 - +0.4
1,778 - +0.7
1,888 - -2.1
1,896 + -2.6
1,952 - +0.5
1,987 + +0.1
1,987 + -2.5
1,988 - +0.3
1,988 - +1.1
1,991 + +0.1
2,220 - EX31_RS15525 0.21 +1.0
2,501 - EX31_RS15525 0.51 +1.0
2,501 - EX31_RS15525 0.51 -0.9
2,591 + EX31_RS15525 0.61 +0.8
2,591 + EX31_RS15525 0.61 +0.3
2,591 + EX31_RS15525 0.61 -0.0
2,592 - EX31_RS15525 0.61 +0.7
2,592 - EX31_RS15525 0.61 +1.1

Or see this region's nucleotide sequence