Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11580 and EX31_RS11585 overlap by 1 nucleotides EX31_RS11585 and EX31_RS11590 are separated by 11 nucleotides EX31_RS11590 and EX31_RS11595 overlap by 4 nucleotides
EX31_RS11580: EX31_RS11580 - ABC transporter substrate-binding protein, at 255,355 to 256,938
_RS11580
EX31_RS11585: EX31_RS11585 - ABC transporter permease, at 256,938 to 257,885
_RS11585
EX31_RS11590: EX31_RS11590 - ABC transporter permease, at 257,897 to 258,724
_RS11590
EX31_RS11595: EX31_RS11595 - ABC transporter ATP-binding protein, at 258,721 to 260,364
_RS11595
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.977 kb on - strand at 257.130 kb on + strand, within EX31_RS11585 at 257.130 kb on + strand, within EX31_RS11585 at 257.153 kb on + strand, within EX31_RS11585 at 257.154 kb on - strand, within EX31_RS11585 at 257.301 kb on - strand, within EX31_RS11585 at 257.301 kb on - strand, within EX31_RS11585 at 257.336 kb on + strand, within EX31_RS11585 at 257.383 kb on - strand, within EX31_RS11585 at 257.472 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.571 kb on + strand, within EX31_RS11585 at 257.572 kb on - strand, within EX31_RS11585 at 257.572 kb on - strand, within EX31_RS11585 at 257.591 kb on + strand, within EX31_RS11585 at 257.683 kb on - strand, within EX31_RS11585 at 257.742 kb on + strand, within EX31_RS11585 at 257.742 kb on + strand, within EX31_RS11585 at 257.742 kb on + strand, within EX31_RS11585 at 257.742 kb on + strand, within EX31_RS11585 at 257.742 kb on + strand, within EX31_RS11585 at 257.743 kb on - strand, within EX31_RS11585 at 257.743 kb on - strand, within EX31_RS11585 at 257.842 kb on + strand at 257.843 kb on - strand at 257.843 kb on - strand at 257.883 kb on + strand at 257.906 kb on + strand at 257.906 kb on + strand at 257.907 kb on - strand at 257.975 kb on - strand at 258.155 kb on - strand, within EX31_RS11590 at 258.166 kb on + strand, within EX31_RS11590 at 258.274 kb on - strand, within EX31_RS11590 at 258.303 kb on + strand, within EX31_RS11590 at 258.304 kb on - strand, within EX31_RS11590 at 258.304 kb on - strand, within EX31_RS11590 at 258.335 kb on - strand, within EX31_RS11590 at 258.389 kb on + strand, within EX31_RS11590 at 258.389 kb on + strand, within EX31_RS11590 at 258.389 kb on + strand, within EX31_RS11590 at 258.389 kb on + strand, within EX31_RS11590 at 258.390 kb on - strand, within EX31_RS11590 at 258.502 kb on + strand, within EX31_RS11590 at 258.502 kb on + strand, within EX31_RS11590 at 258.514 kb on + strand, within EX31_RS11590 at 258.525 kb on + strand, within EX31_RS11590 at 258.525 kb on + strand, within EX31_RS11590 at 258.525 kb on + strand, within EX31_RS11590 at 258.526 kb on - strand, within EX31_RS11590 at 258.534 kb on + strand, within EX31_RS11590 at 258.534 kb on + strand, within EX31_RS11590 at 258.534 kb on + strand, within EX31_RS11590 at 258.534 kb on + strand, within EX31_RS11590 at 258.535 kb on - strand, within EX31_RS11590 at 258.535 kb on - strand, within EX31_RS11590 at 258.557 kb on + strand, within EX31_RS11590 at 258.626 kb on + strand, within EX31_RS11590 at 258.737 kb on + strand at 258.878 kb on + strand at 258.883 kb on + strand at 258.883 kb on + strand at 258.962 kb on + strand, within EX31_RS11595 at 258.994 kb on + strand, within EX31_RS11595 at 258.994 kb on + strand, within EX31_RS11595 at 258.994 kb on + strand, within EX31_RS11595 at 258.995 kb on - strand, within EX31_RS11595 at 259.227 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.342 kb on + strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.343 kb on - strand, within EX31_RS11595 at 259.344 kb on + strand, within EX31_RS11595 at 259.344 kb on + strand, within EX31_RS11595 at 259.344 kb on + strand, within EX31_RS11595 at 259.344 kb on + strand, within EX31_RS11595 at 259.389 kb on + strand, within EX31_RS11595 at 259.390 kb on - strand, within EX31_RS11595 at 259.462 kb on + strand, within EX31_RS11595 at 259.462 kb on + strand, within EX31_RS11595 at 259.462 kb on + strand, within EX31_RS11595 at 259.464 kb on + strand, within EX31_RS11595 at 259.464 kb on + strand, within EX31_RS11595 at 259.464 kb on + strand, within EX31_RS11595 at 259.464 kb on + strand, within EX31_RS11595 at 259.465 kb on - strand, within EX31_RS11595 at 259.589 kb on + strand, within EX31_RS11595 at 259.589 kb on + strand, within EX31_RS11595 at 259.590 kb on - strand, within EX31_RS11595 at 259.662 kb on + strand, within EX31_RS11595
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 256,977 - +0.4 257,130 + EX31_RS11585 0.20 -0.4 257,130 + EX31_RS11585 0.20 -0.2 257,153 + EX31_RS11585 0.23 +1.7 257,154 - EX31_RS11585 0.23 +1.1 257,301 - EX31_RS11585 0.38 +1.1 257,301 - EX31_RS11585 0.38 +1.3 257,336 + EX31_RS11585 0.42 +0.4 257,383 - EX31_RS11585 0.47 -0.7 257,472 + EX31_RS11585 0.56 -0.9 257,571 + EX31_RS11585 0.67 +0.7 257,571 + EX31_RS11585 0.67 +0.7 257,571 + EX31_RS11585 0.67 +2.3 257,571 + EX31_RS11585 0.67 -0.0 257,571 + EX31_RS11585 0.67 -1.3 257,571 + EX31_RS11585 0.67 +2.1 257,571 + EX31_RS11585 0.67 -0.3 257,572 - EX31_RS11585 0.67 +0.7 257,572 - EX31_RS11585 0.67 +0.7 257,591 + EX31_RS11585 0.69 -1.3 257,683 - EX31_RS11585 0.79 +0.4 257,742 + EX31_RS11585 0.85 -0.5 257,742 + EX31_RS11585 0.85 -1.3 257,742 + EX31_RS11585 0.85 +0.7 257,742 + EX31_RS11585 0.85 +0.9 257,742 + EX31_RS11585 0.85 +1.1 257,743 - EX31_RS11585 0.85 +1.0 257,743 - EX31_RS11585 0.85 -1.8 257,842 + -0.3 257,843 - -2.8 257,843 - -1.3 257,883 + +0.7 257,906 + +0.1 257,906 + -1.1 257,907 - +0.5 257,975 - -1.3 258,155 - EX31_RS11590 0.31 +0.4 258,166 + EX31_RS11590 0.32 -1.9 258,274 - EX31_RS11590 0.46 -0.9 258,303 + EX31_RS11590 0.49 +0.4 258,304 - EX31_RS11590 0.49 -0.3 258,304 - EX31_RS11590 0.49 -0.9 258,335 - EX31_RS11590 0.53 -0.3 258,389 + EX31_RS11590 0.59 -0.3 258,389 + EX31_RS11590 0.59 -0.1 258,389 + EX31_RS11590 0.59 +2.3 258,389 + EX31_RS11590 0.59 +0.0 258,390 - EX31_RS11590 0.60 -0.3 258,502 + EX31_RS11590 0.73 -1.6 258,502 + EX31_RS11590 0.73 +0.7 258,514 + EX31_RS11590 0.75 +0.7 258,525 + EX31_RS11590 0.76 -2.9 258,525 + EX31_RS11590 0.76 -1.9 258,525 + EX31_RS11590 0.76 -0.0 258,526 - EX31_RS11590 0.76 +0.7 258,534 + EX31_RS11590 0.77 -0.9 258,534 + EX31_RS11590 0.77 -0.3 258,534 + EX31_RS11590 0.77 +0.3 258,534 + EX31_RS11590 0.77 -1.1 258,535 - EX31_RS11590 0.77 +0.4 258,535 - EX31_RS11590 0.77 +0.4 258,557 + EX31_RS11590 0.80 +0.1 258,626 + EX31_RS11590 0.88 +0.7 258,737 + -0.9 258,878 + +1.3 258,883 + +2.3 258,883 + +0.4 258,962 + EX31_RS11595 0.15 +1.6 258,994 + EX31_RS11595 0.17 -0.3 258,994 + EX31_RS11595 0.17 +1.7 258,994 + EX31_RS11595 0.17 +0.7 258,995 - EX31_RS11595 0.17 -0.2 259,227 + EX31_RS11595 0.31 -1.6 259,342 + EX31_RS11595 0.38 +0.5 259,342 + EX31_RS11595 0.38 -0.3 259,342 + EX31_RS11595 0.38 -0.3 259,342 + EX31_RS11595 0.38 +0.7 259,342 + EX31_RS11595 0.38 -0.3 259,342 + EX31_RS11595 0.38 +0.4 259,342 + EX31_RS11595 0.38 -1.2 259,342 + EX31_RS11595 0.38 +1.7 259,342 + EX31_RS11595 0.38 -0.9 259,342 + EX31_RS11595 0.38 -0.3 259,342 + EX31_RS11595 0.38 -0.3 259,342 + EX31_RS11595 0.38 -0.6 259,342 + EX31_RS11595 0.38 -0.3 259,343 - EX31_RS11595 0.38 -0.9 259,343 - EX31_RS11595 0.38 +0.7 259,343 - EX31_RS11595 0.38 -0.7 259,343 - EX31_RS11595 0.38 -0.3 259,343 - EX31_RS11595 0.38 +0.1 259,343 - EX31_RS11595 0.38 +0.0 259,343 - EX31_RS11595 0.38 +0.0 259,343 - EX31_RS11595 0.38 -0.2 259,344 + EX31_RS11595 0.38 +1.3 259,344 + EX31_RS11595 0.38 +2.6 259,344 + EX31_RS11595 0.38 -0.1 259,344 + EX31_RS11595 0.38 +0.3 259,389 + EX31_RS11595 0.41 -1.6 259,390 - EX31_RS11595 0.41 -0.3 259,462 + EX31_RS11595 0.45 +0.9 259,462 + EX31_RS11595 0.45 -0.3 259,462 + EX31_RS11595 0.45 +0.3 259,464 + EX31_RS11595 0.45 -0.5 259,464 + EX31_RS11595 0.45 -1.8 259,464 + EX31_RS11595 0.45 +0.7 259,464 + EX31_RS11595 0.45 +0.3 259,465 - EX31_RS11595 0.45 -0.3 259,589 + EX31_RS11595 0.53 -1.3 259,589 + EX31_RS11595 0.53 +0.2 259,590 - EX31_RS11595 0.53 +0.1 259,662 + EX31_RS11595 0.57 -0.9
Or see this region's nucleotide sequence