Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10495 and EX31_RS10500 are separated by 254 nucleotides EX31_RS10500 and EX31_RS10505 are separated by 121 nucleotides
EX31_RS10495: EX31_RS10495 - alpha/beta hydrolase, at 12,672 to 13,502
_RS10495
EX31_RS10500: EX31_RS10500 - SpoVR family protein, at 13,757 to 15,292
_RS10500
EX31_RS10505: EX31_RS10505 - fatty acid metabolism transcriptional regulator FadR, at 15,414 to 16,136
_RS10505
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 12.884 kb on + strand, within EX31_RS10495 at 12.884 kb on + strand, within EX31_RS10495 at 12.885 kb on - strand, within EX31_RS10495 at 12.885 kb on - strand, within EX31_RS10495 at 12.990 kb on + strand, within EX31_RS10495 at 12.991 kb on - strand, within EX31_RS10495 at 12.992 kb on + strand, within EX31_RS10495 at 12.992 kb on + strand, within EX31_RS10495 at 13.034 kb on - strand, within EX31_RS10495 at 13.034 kb on - strand, within EX31_RS10495 at 13.034 kb on - strand, within EX31_RS10495 at 13.087 kb on + strand, within EX31_RS10495 at 13.250 kb on - strand, within EX31_RS10495 at 13.260 kb on + strand, within EX31_RS10495 at 13.261 kb on - strand, within EX31_RS10495 at 13.272 kb on - strand, within EX31_RS10495 at 13.531 kb on + strand at 13.610 kb on + strand at 13.610 kb on + strand at 13.612 kb on + strand at 13.612 kb on + strand at 13.612 kb on + strand at 13.612 kb on + strand at 13.613 kb on - strand at 13.613 kb on - strand at 13.613 kb on - strand at 13.643 kb on + strand at 13.644 kb on - strand at 13.648 kb on - strand at 13.669 kb on + strand at 13.669 kb on + strand at 13.670 kb on - strand at 13.676 kb on - strand at 13.735 kb on + strand at 13.736 kb on - strand at 13.756 kb on + strand at 13.757 kb on - strand at 13.757 kb on - strand at 13.802 kb on - strand at 13.841 kb on + strand at 13.841 kb on + strand at 13.890 kb on - strand at 13.937 kb on + strand, within EX31_RS10500 at 13.964 kb on + strand, within EX31_RS10500 at 13.964 kb on + strand, within EX31_RS10500 at 14.012 kb on + strand, within EX31_RS10500 at 14.012 kb on + strand, within EX31_RS10500 at 14.013 kb on - strand, within EX31_RS10500 at 14.013 kb on - strand, within EX31_RS10500 at 14.013 kb on - strand, within EX31_RS10500 at 14.014 kb on + strand, within EX31_RS10500 at 14.014 kb on + strand, within EX31_RS10500 at 14.015 kb on - strand, within EX31_RS10500 at 14.075 kb on + strand, within EX31_RS10500 at 14.076 kb on - strand, within EX31_RS10500 at 14.159 kb on - strand, within EX31_RS10500 at 14.163 kb on - strand, within EX31_RS10500 at 14.225 kb on + strand, within EX31_RS10500 at 14.225 kb on + strand, within EX31_RS10500 at 14.228 kb on - strand, within EX31_RS10500 at 14.492 kb on + strand, within EX31_RS10500 at 14.498 kb on - strand, within EX31_RS10500 at 14.630 kb on + strand, within EX31_RS10500 at 14.631 kb on - strand, within EX31_RS10500 at 14.651 kb on + strand, within EX31_RS10500 at 14.651 kb on + strand, within EX31_RS10500 at 14.651 kb on + strand, within EX31_RS10500 at 14.717 kb on + strand, within EX31_RS10500 at 14.717 kb on + strand, within EX31_RS10500 at 14.717 kb on + strand, within EX31_RS10500 at 14.718 kb on - strand, within EX31_RS10500 at 14.729 kb on + strand, within EX31_RS10500 at 14.730 kb on - strand, within EX31_RS10500 at 14.731 kb on + strand, within EX31_RS10500 at 14.731 kb on + strand, within EX31_RS10500 at 14.732 kb on - strand, within EX31_RS10500 at 14.732 kb on - strand, within EX31_RS10500 at 14.744 kb on + strand, within EX31_RS10500 at 14.744 kb on + strand, within EX31_RS10500 at 14.752 kb on + strand, within EX31_RS10500 at 14.800 kb on + strand, within EX31_RS10500 at 14.801 kb on - strand, within EX31_RS10500 at 14.983 kb on + strand, within EX31_RS10500 at 14.984 kb on - strand, within EX31_RS10500 at 15.056 kb on + strand, within EX31_RS10500 at 15.056 kb on + strand, within EX31_RS10500 at 15.056 kb on + strand, within EX31_RS10500 at 15.058 kb on + strand, within EX31_RS10500 at 15.058 kb on + strand, within EX31_RS10500 at 15.059 kb on - strand, within EX31_RS10500 at 15.059 kb on - strand, within EX31_RS10500 at 15.130 kb on - strand, within EX31_RS10500 at 15.135 kb on - strand, within EX31_RS10500 at 15.256 kb on - strand at 15.344 kb on - strand at 15.368 kb on + strand at 15.368 kb on + strand at 15.369 kb on - strand at 15.369 kb on - strand at 15.406 kb on - strand at 15.416 kb on - strand at 15.449 kb on + strand at 15.450 kb on - strand at 15.524 kb on - strand, within EX31_RS10505 at 15.524 kb on - strand, within EX31_RS10505 at 15.524 kb on - strand, within EX31_RS10505 at 15.601 kb on + strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.602 kb on - strand, within EX31_RS10505 at 15.623 kb on - strand, within EX31_RS10505 at 15.623 kb on - strand, within EX31_RS10505 at 15.840 kb on - strand, within EX31_RS10505 at 15.893 kb on + strand, within EX31_RS10505 at 15.982 kb on - strand, within EX31_RS10505 at 16.080 kb on - strand at 16.092 kb on - strand at 16.092 kb on - strand at 16.092 kb on - strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.093 kb on + strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.094 kb on - strand at 16.130 kb on + strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.131 kb on - strand at 16.163 kb on + strand at 16.164 kb on - strand at 16.167 kb on - strand at 16.173 kb on - strand at 16.174 kb on + strand at 16.174 kb on + strand at 16.174 kb on + strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.175 kb on - strand at 16.190 kb on - strand at 16.210 kb on + strand at 16.211 kb on - strand at 16.212 kb on + strand at 16.229 kb on + strand at 16.230 kb on - strand at 16.230 kb on - strand at 16.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 12,884 + EX31_RS10495 0.26 +0.5 12,884 + EX31_RS10495 0.26 +0.0 12,885 - EX31_RS10495 0.26 -0.6 12,885 - EX31_RS10495 0.26 -1.2 12,990 + EX31_RS10495 0.38 +1.1 12,991 - EX31_RS10495 0.38 -0.7 12,992 + EX31_RS10495 0.39 +0.8 12,992 + EX31_RS10495 0.39 +1.3 13,034 - EX31_RS10495 0.44 -0.9 13,034 - EX31_RS10495 0.44 +0.2 13,034 - EX31_RS10495 0.44 -0.6 13,087 + EX31_RS10495 0.50 -1.6 13,250 - EX31_RS10495 0.70 +0.4 13,260 + EX31_RS10495 0.71 +1.7 13,261 - EX31_RS10495 0.71 +0.7 13,272 - EX31_RS10495 0.72 -1.2 13,531 + -0.4 13,610 + -0.3 13,610 + -0.3 13,612 + +0.4 13,612 + -2.5 13,612 + -0.7 13,612 + -0.9 13,613 - +0.0 13,613 - +0.3 13,613 - +1.0 13,643 + +0.1 13,644 - +0.8 13,648 - +0.7 13,669 + +0.7 13,669 + +1.3 13,670 - +1.2 13,676 - +1.8 13,735 + -0.7 13,736 - +0.8 13,756 + +1.5 13,757 - +2.8 13,757 - +3.0 13,802 - +2.0 13,841 + +0.9 13,841 + +1.2 13,890 - +3.3 13,937 + EX31_RS10500 0.12 +1.1 13,964 + EX31_RS10500 0.13 +0.7 13,964 + EX31_RS10500 0.13 +1.7 14,012 + EX31_RS10500 0.17 +1.5 14,012 + EX31_RS10500 0.17 -1.3 14,013 - EX31_RS10500 0.17 +1.7 14,013 - EX31_RS10500 0.17 +1.5 14,013 - EX31_RS10500 0.17 -0.5 14,014 + EX31_RS10500 0.17 +3.9 14,014 + EX31_RS10500 0.17 +1.2 14,015 - EX31_RS10500 0.17 +1.7 14,075 + EX31_RS10500 0.21 +1.9 14,076 - EX31_RS10500 0.21 +2.1 14,159 - EX31_RS10500 0.26 +1.7 14,163 - EX31_RS10500 0.26 +1.2 14,225 + EX31_RS10500 0.30 +0.7 14,225 + EX31_RS10500 0.30 +3.0 14,228 - EX31_RS10500 0.31 +2.6 14,492 + EX31_RS10500 0.48 +1.7 14,498 - EX31_RS10500 0.48 +1.6 14,630 + EX31_RS10500 0.57 +1.8 14,631 - EX31_RS10500 0.57 +1.6 14,651 + EX31_RS10500 0.58 +1.7 14,651 + EX31_RS10500 0.58 +2.1 14,651 + EX31_RS10500 0.58 +1.6 14,717 + EX31_RS10500 0.62 +1.7 14,717 + EX31_RS10500 0.62 +1.7 14,717 + EX31_RS10500 0.62 +0.7 14,718 - EX31_RS10500 0.63 +2.1 14,729 + EX31_RS10500 0.63 +0.9 14,730 - EX31_RS10500 0.63 +2.3 14,731 + EX31_RS10500 0.63 +2.7 14,731 + EX31_RS10500 0.63 +1.2 14,732 - EX31_RS10500 0.63 +2.3 14,732 - EX31_RS10500 0.63 +1.5 14,744 + EX31_RS10500 0.64 +1.0 14,744 + EX31_RS10500 0.64 +2.0 14,752 + EX31_RS10500 0.65 +1.7 14,800 + EX31_RS10500 0.68 +2.0 14,801 - EX31_RS10500 0.68 +1.6 14,983 + EX31_RS10500 0.80 +3.3 14,984 - EX31_RS10500 0.80 +1.7 15,056 + EX31_RS10500 0.85 +2.2 15,056 + EX31_RS10500 0.85 +0.7 15,056 + EX31_RS10500 0.85 +0.7 15,058 + EX31_RS10500 0.85 +2.3 15,058 + EX31_RS10500 0.85 +1.4 15,059 - EX31_RS10500 0.85 +0.7 15,059 - EX31_RS10500 0.85 +0.7 15,130 - EX31_RS10500 0.89 +1.4 15,135 - EX31_RS10500 0.90 -4.5 15,256 - +2.4 15,344 - -2.0 15,368 + +0.3 15,368 + -0.3 15,369 - -0.9 15,369 - +0.1 15,406 - +0.4 15,416 - +0.4 15,449 + -0.3 15,450 - +1.4 15,524 - EX31_RS10505 0.15 -0.9 15,524 - EX31_RS10505 0.15 -0.7 15,524 - EX31_RS10505 0.15 +0.7 15,601 + EX31_RS10505 0.26 -2.1 15,602 - EX31_RS10505 0.26 -1.1 15,602 - EX31_RS10505 0.26 -2.5 15,602 - EX31_RS10505 0.26 -3.0 15,602 - EX31_RS10505 0.26 -1.6 15,623 - EX31_RS10505 0.29 -1.9 15,623 - EX31_RS10505 0.29 +0.4 15,840 - EX31_RS10505 0.59 -1.3 15,893 + EX31_RS10505 0.66 -1.3 15,982 - EX31_RS10505 0.79 -2.9 16,080 - -2.5 16,092 - -2.4 16,092 - -1.6 16,092 - -0.9 16,093 + +0.7 16,093 + -1.6 16,093 + -0.3 16,093 + +0.4 16,093 + +0.1 16,093 + +0.3 16,094 - -0.1 16,094 - +0.7 16,094 - +0.7 16,094 - -0.9 16,094 - -0.3 16,094 - -1.3 16,094 - -1.6 16,094 - -0.3 16,094 - -0.9 16,130 + -0.6 16,131 - -1.2 16,131 - -0.3 16,131 - -0.6 16,163 + +0.2 16,164 - -1.2 16,167 - +0.7 16,173 - -0.3 16,174 + +2.0 16,174 + -0.9 16,174 + +0.7 16,175 - +1.7 16,175 - -1.3 16,175 - +0.3 16,175 - +0.8 16,175 - +0.9 16,175 - +1.3 16,175 - -1.6 16,175 - -1.3 16,175 - -1.5 16,175 - +0.4 16,190 - +0.1 16,210 + +0.7 16,211 - -0.9 16,212 + -1.3 16,229 + +0.9 16,230 - -0.3 16,230 - -2.3 16,230 - +0.7
Or see this region's nucleotide sequence