Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10275 and EX31_RS10280 are separated by 62 nucleotides EX31_RS10280 and EX31_RS10285 are separated by 35 nucleotides EX31_RS10285 and EX31_RS10290 are separated by 2 nucleotides
EX31_RS10275: EX31_RS10275 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 268,342 to 269,451
_RS10275
EX31_RS10280: EX31_RS10280 - alpha-glucosidase, at 269,514 to 270,875
_RS10280
EX31_RS10285: EX31_RS10285 - carbohydrate ABC transporter permease, at 270,911 to 271,756
_RS10285
EX31_RS10290: EX31_RS10290 - sugar ABC transporter permease, at 271,759 to 272,739
_RS10290
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 268.587 kb on + strand, within EX31_RS10275 at 268.603 kb on - strand, within EX31_RS10275 at 268.784 kb on + strand, within EX31_RS10275 at 268.839 kb on + strand, within EX31_RS10275 at 268.840 kb on - strand, within EX31_RS10275 at 268.840 kb on - strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.883 kb on + strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.884 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 268.888 kb on - strand, within EX31_RS10275 at 269.087 kb on - strand, within EX31_RS10275 at 269.091 kb on + strand, within EX31_RS10275 at 269.091 kb on + strand, within EX31_RS10275 at 269.164 kb on - strand, within EX31_RS10275 at 269.164 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.199 kb on - strand, within EX31_RS10275 at 269.209 kb on + strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.210 kb on - strand, within EX31_RS10275 at 269.252 kb on + strand, within EX31_RS10275 at 269.252 kb on + strand, within EX31_RS10275 at 269.253 kb on - strand, within EX31_RS10275 at 269.253 kb on - strand, within EX31_RS10275 at 269.266 kb on - strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.267 kb on + strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.268 kb on - strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.284 kb on + strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.285 kb on - strand, within EX31_RS10275 at 269.314 kb on + strand, within EX31_RS10275 at 269.315 kb on - strand, within EX31_RS10275 at 269.315 kb on - strand, within EX31_RS10275 at 269.502 kb on + strand at 269.503 kb on - strand at 269.503 kb on - strand at 269.524 kb on + strand at 269.525 kb on - strand at 269.528 kb on + strand at 269.529 kb on - strand at 269.692 kb on - strand, within EX31_RS10280 at 269.733 kb on + strand, within EX31_RS10280 at 269.733 kb on + strand, within EX31_RS10280 at 269.734 kb on - strand, within EX31_RS10280 at 269.734 kb on - strand, within EX31_RS10280 at 269.734 kb on - strand, within EX31_RS10280 at 269.734 kb on - strand, within EX31_RS10280 at 269.796 kb on - strand, within EX31_RS10280 at 269.833 kb on + strand, within EX31_RS10280 at 269.888 kb on + strand, within EX31_RS10280 at 269.888 kb on + strand, within EX31_RS10280 at 269.889 kb on - strand, within EX31_RS10280 at 269.889 kb on - strand, within EX31_RS10280 at 269.889 kb on - strand, within EX31_RS10280 at 269.889 kb on - strand, within EX31_RS10280 at 269.920 kb on + strand, within EX31_RS10280 at 269.920 kb on + strand, within EX31_RS10280 at 269.921 kb on - strand, within EX31_RS10280 at 269.921 kb on - strand, within EX31_RS10280 at 269.937 kb on - strand, within EX31_RS10280 at 269.990 kb on - strand, within EX31_RS10280 at 269.990 kb on - strand, within EX31_RS10280 at 270.017 kb on + strand, within EX31_RS10280 at 270.076 kb on + strand, within EX31_RS10280 at 270.077 kb on - strand, within EX31_RS10280 at 270.137 kb on + strand, within EX31_RS10280 at 270.154 kb on + strand, within EX31_RS10280 at 270.154 kb on + strand, within EX31_RS10280 at 270.155 kb on - strand, within EX31_RS10280 at 270.193 kb on + strand, within EX31_RS10280 at 270.194 kb on - strand, within EX31_RS10280 at 270.223 kb on + strand, within EX31_RS10280 at 270.224 kb on - strand, within EX31_RS10280 at 270.234 kb on - strand, within EX31_RS10280 at 270.247 kb on + strand, within EX31_RS10280 at 270.259 kb on - strand, within EX31_RS10280 at 270.437 kb on - strand, within EX31_RS10280 at 270.441 kb on - strand, within EX31_RS10280 at 270.441 kb on - strand, within EX31_RS10280 at 270.441 kb on - strand, within EX31_RS10280 at 270.506 kb on + strand, within EX31_RS10280 at 270.506 kb on + strand, within EX31_RS10280 at 270.821 kb on + strand at 270.856 kb on - strand at 270.875 kb on + strand at 270.964 kb on + strand at 270.964 kb on + strand at 270.965 kb on - strand at 271.057 kb on + strand, within EX31_RS10285 at 271.057 kb on + strand, within EX31_RS10285 at 271.058 kb on - strand, within EX31_RS10285 at 271.118 kb on - strand, within EX31_RS10285 at 271.118 kb on - strand, within EX31_RS10285 at 271.268 kb on - strand, within EX31_RS10285 at 271.288 kb on + strand, within EX31_RS10285 at 271.289 kb on - strand, within EX31_RS10285 at 271.315 kb on - strand, within EX31_RS10285 at 271.344 kb on + strand, within EX31_RS10285 at 271.344 kb on + strand, within EX31_RS10285 at 271.345 kb on - strand, within EX31_RS10285 at 271.345 kb on - strand, within EX31_RS10285 at 271.375 kb on + strand, within EX31_RS10285 at 271.375 kb on + strand, within EX31_RS10285 at 271.376 kb on - strand, within EX31_RS10285 at 271.535 kb on - strand, within EX31_RS10285 at 271.578 kb on + strand, within EX31_RS10285 at 271.578 kb on + strand, within EX31_RS10285 at 271.579 kb on - strand, within EX31_RS10285 at 271.641 kb on - strand, within EX31_RS10285 at 271.641 kb on - strand, within EX31_RS10285 at 271.662 kb on + strand, within EX31_RS10285 at 271.663 kb on - strand, within EX31_RS10285 at 271.663 kb on - strand, within EX31_RS10285 at 271.761 kb on - strand at 271.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 268,587 + EX31_RS10275 0.22 +0.5 268,603 - EX31_RS10275 0.24 +1.9 268,784 + EX31_RS10275 0.40 -0.1 268,839 + EX31_RS10275 0.45 -0.1 268,840 - EX31_RS10275 0.45 -0.5 268,840 - EX31_RS10275 0.45 +1.2 268,883 + EX31_RS10275 0.49 +0.9 268,883 + EX31_RS10275 0.49 -2.3 268,883 + EX31_RS10275 0.49 +0.2 268,884 - EX31_RS10275 0.49 -0.7 268,884 - EX31_RS10275 0.49 +1.1 268,884 - EX31_RS10275 0.49 -0.1 268,884 - EX31_RS10275 0.49 -0.1 268,884 - EX31_RS10275 0.49 -0.1 268,884 - EX31_RS10275 0.49 -0.3 268,884 - EX31_RS10275 0.49 +0.5 268,884 - EX31_RS10275 0.49 -2.5 268,888 - EX31_RS10275 0.49 +0.1 268,888 - EX31_RS10275 0.49 +0.9 268,888 - EX31_RS10275 0.49 +0.9 268,888 - EX31_RS10275 0.49 -1.5 269,087 - EX31_RS10275 0.67 -0.6 269,091 + EX31_RS10275 0.67 +0.9 269,091 + EX31_RS10275 0.67 -1.3 269,164 - EX31_RS10275 0.74 +0.9 269,164 - EX31_RS10275 0.74 +1.1 269,199 - EX31_RS10275 0.77 +1.9 269,199 - EX31_RS10275 0.77 +0.5 269,199 - EX31_RS10275 0.77 +0.5 269,209 + EX31_RS10275 0.78 -1.1 269,210 - EX31_RS10275 0.78 +0.4 269,210 - EX31_RS10275 0.78 +0.5 269,210 - EX31_RS10275 0.78 -0.4 269,252 + EX31_RS10275 0.82 +0.2 269,252 + EX31_RS10275 0.82 -0.1 269,253 - EX31_RS10275 0.82 -0.6 269,253 - EX31_RS10275 0.82 +0.5 269,266 - EX31_RS10275 0.83 +0.5 269,267 + EX31_RS10275 0.83 -0.6 269,267 + EX31_RS10275 0.83 -1.5 269,267 + EX31_RS10275 0.83 +1.9 269,267 + EX31_RS10275 0.83 -0.1 269,267 + EX31_RS10275 0.83 +3.1 269,267 + EX31_RS10275 0.83 -0.5 269,267 + EX31_RS10275 0.83 -1.3 269,268 - EX31_RS10275 0.83 -1.6 269,268 - EX31_RS10275 0.83 -1.1 269,268 - EX31_RS10275 0.83 +1.0 269,268 - EX31_RS10275 0.83 -0.8 269,268 - EX31_RS10275 0.83 -0.0 269,268 - EX31_RS10275 0.83 +0.0 269,268 - EX31_RS10275 0.83 +0.3 269,268 - EX31_RS10275 0.83 +1.5 269,268 - EX31_RS10275 0.83 -0.5 269,268 - EX31_RS10275 0.83 +1.9 269,268 - EX31_RS10275 0.83 +0.9 269,268 - EX31_RS10275 0.83 +1.3 269,284 + EX31_RS10275 0.85 -1.1 269,284 + EX31_RS10275 0.85 -0.5 269,284 + EX31_RS10275 0.85 -1.1 269,285 - EX31_RS10275 0.85 +0.5 269,285 - EX31_RS10275 0.85 +0.5 269,285 - EX31_RS10275 0.85 +1.5 269,314 + EX31_RS10275 0.88 +1.3 269,315 - EX31_RS10275 0.88 -0.1 269,315 - EX31_RS10275 0.88 +0.9 269,502 + -0.5 269,503 - +0.3 269,503 - -1.6 269,524 + +1.5 269,525 - +0.9 269,528 + +0.2 269,529 - -0.9 269,692 - EX31_RS10280 0.13 +0.8 269,733 + EX31_RS10280 0.16 +0.9 269,733 + EX31_RS10280 0.16 -0.3 269,734 - EX31_RS10280 0.16 -1.8 269,734 - EX31_RS10280 0.16 +0.5 269,734 - EX31_RS10280 0.16 -0.6 269,734 - EX31_RS10280 0.16 +1.3 269,796 - EX31_RS10280 0.21 -0.6 269,833 + EX31_RS10280 0.23 +0.8 269,888 + EX31_RS10280 0.27 +0.5 269,888 + EX31_RS10280 0.27 -0.5 269,889 - EX31_RS10280 0.28 +0.5 269,889 - EX31_RS10280 0.28 +0.5 269,889 - EX31_RS10280 0.28 -0.3 269,889 - EX31_RS10280 0.28 +0.5 269,920 + EX31_RS10280 0.30 +0.6 269,920 + EX31_RS10280 0.30 -1.3 269,921 - EX31_RS10280 0.30 +1.9 269,921 - EX31_RS10280 0.30 -1.1 269,937 - EX31_RS10280 0.31 -0.3 269,990 - EX31_RS10280 0.35 -0.5 269,990 - EX31_RS10280 0.35 -0.5 270,017 + EX31_RS10280 0.37 +2.1 270,076 + EX31_RS10280 0.41 -1.6 270,077 - EX31_RS10280 0.41 +0.8 270,137 + EX31_RS10280 0.46 +0.5 270,154 + EX31_RS10280 0.47 -2.3 270,154 + EX31_RS10280 0.47 -0.6 270,155 - EX31_RS10280 0.47 -0.2 270,193 + EX31_RS10280 0.50 -0.1 270,194 - EX31_RS10280 0.50 +0.5 270,223 + EX31_RS10280 0.52 -1.6 270,224 - EX31_RS10280 0.52 -0.5 270,234 - EX31_RS10280 0.53 -1.0 270,247 + EX31_RS10280 0.54 +0.8 270,259 - EX31_RS10280 0.55 -1.5 270,437 - EX31_RS10280 0.68 +0.9 270,441 - EX31_RS10280 0.68 +0.5 270,441 - EX31_RS10280 0.68 -0.7 270,441 - EX31_RS10280 0.68 +0.5 270,506 + EX31_RS10280 0.73 -0.3 270,506 + EX31_RS10280 0.73 +3.1 270,821 + +0.5 270,856 - +0.8 270,875 + +0.3 270,964 + +0.9 270,964 + -0.1 270,965 - -0.5 271,057 + EX31_RS10285 0.17 -0.5 271,057 + EX31_RS10285 0.17 -0.1 271,058 - EX31_RS10285 0.17 -1.5 271,118 - EX31_RS10285 0.24 -0.5 271,118 - EX31_RS10285 0.24 +1.3 271,268 - EX31_RS10285 0.42 -0.1 271,288 + EX31_RS10285 0.45 +0.5 271,289 - EX31_RS10285 0.45 +0.8 271,315 - EX31_RS10285 0.48 +1.3 271,344 + EX31_RS10285 0.51 -0.1 271,344 + EX31_RS10285 0.51 -0.9 271,345 - EX31_RS10285 0.51 -3.2 271,345 - EX31_RS10285 0.51 -0.8 271,375 + EX31_RS10285 0.55 +1.4 271,375 + EX31_RS10285 0.55 -0.1 271,376 - EX31_RS10285 0.55 -0.5 271,535 - EX31_RS10285 0.74 -2.5 271,578 + EX31_RS10285 0.79 +1.1 271,578 + EX31_RS10285 0.79 +2.9 271,579 - EX31_RS10285 0.79 +0.8 271,641 - EX31_RS10285 0.86 -0.5 271,641 - EX31_RS10285 0.86 -1.8 271,662 + EX31_RS10285 0.89 -0.1 271,663 - EX31_RS10285 0.89 -0.2 271,663 - EX31_RS10285 0.89 +1.5 271,761 - +0.7 271,761 - -3.3
Or see this region's nucleotide sequence