Strain Fitness in Rahnella sp. WP5 around EX31_RS09550

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09540 and EX31_RS09545 overlap by 4 nucleotidesEX31_RS09545 and EX31_RS09550 overlap by 8 nucleotidesEX31_RS09550 and EX31_RS09555 overlap by 1 nucleotides EX31_RS09540: EX31_RS09540 - flagellar basal body M-ring protein FliF, at 112,081 to 113,790 _RS09540 EX31_RS09545: EX31_RS09545 - flagellar motor switch protein FliG, at 113,787 to 114,779 _RS09545 EX31_RS09550: EX31_RS09550 - flagellar assembly protein FliH, at 114,772 to 115,557 _RS09550 EX31_RS09555: EX31_RS09555 - flagellum-specific ATP synthase FliI, at 115,557 to 116,921 _RS09555 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 113.775 kb on + strandat 113.793 kb on - strandat 113.980 kb on - strand, within EX31_RS09545at 113.999 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.674 kb on + strand, within EX31_RS09545at 114.675 kb on - strand, within EX31_RS09545at 114.675 kb on - strand, within EX31_RS09545at 114.771 kb on + strandat 114.772 kb on - strandat 114.772 kb on - strandat 114.786 kb on + strandat 114.786 kb on + strandat 114.790 kb on - strandat 114.790 kb on - strandat 114.987 kb on - strand, within EX31_RS09550at 115.170 kb on + strand, within EX31_RS09550at 115.171 kb on - strand, within EX31_RS09550at 115.320 kb on + strand, within EX31_RS09550at 115.320 kb on + strand, within EX31_RS09550at 115.694 kb on - strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.839 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 115.915 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.287 kb on + strand, within EX31_RS09555at 116.288 kb on - strand, within EX31_RS09555at 116.288 kb on - strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.291 kb on + strand, within EX31_RS09555at 116.292 kb on - strand, within EX31_RS09555at 116.292 kb on - strand, within EX31_RS09555at 116.353 kb on + strand, within EX31_RS09555at 116.443 kb on - strand, within EX31_RS09555at 116.530 kb on - strand, within EX31_RS09555at 116.530 kb on - strand, within EX31_RS09555at 116.536 kb on + strand, within EX31_RS09555at 116.536 kb on + strand, within EX31_RS09555at 116.537 kb on - strand, within EX31_RS09555

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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113,775 + +0.5
113,793 - +0.5
113,980 - EX31_RS09545 0.19 -0.5
113,999 + EX31_RS09545 0.21 +1.0
114,674 + EX31_RS09545 0.89 -1.5
114,674 + EX31_RS09545 0.89 -0.2
114,674 + EX31_RS09545 0.89 -0.9
114,674 + EX31_RS09545 0.89 +2.1
114,675 - EX31_RS09545 0.89 -0.1
114,675 - EX31_RS09545 0.89 -0.2
114,771 + -0.1
114,772 - +0.9
114,772 - +1.5
114,786 + +0.5
114,786 + +0.4
114,790 - -0.5
114,790 - +2.5
114,987 - EX31_RS09550 0.27 -1.1
115,170 + EX31_RS09550 0.51 -1.1
115,171 - EX31_RS09550 0.51 -1.1
115,320 + EX31_RS09550 0.70 -0.1
115,320 + EX31_RS09550 0.70 -0.8
115,694 - EX31_RS09555 0.10 +0.1
115,839 + EX31_RS09555 0.21 +0.3
115,839 + EX31_RS09555 0.21 -0.8
115,839 + EX31_RS09555 0.21 +0.7
115,839 + EX31_RS09555 0.21 -0.7
115,915 + EX31_RS09555 0.26 +1.1
115,915 + EX31_RS09555 0.26 +1.5
115,915 + EX31_RS09555 0.26 -0.1
115,915 + EX31_RS09555 0.26 +0.2
115,915 + EX31_RS09555 0.26 -0.1
116,287 + EX31_RS09555 0.53 +1.5
116,287 + EX31_RS09555 0.53 -1.2
116,287 + EX31_RS09555 0.53 -1.5
116,287 + EX31_RS09555 0.53 -0.7
116,288 - EX31_RS09555 0.54 -1.3
116,288 - EX31_RS09555 0.54 +0.5
116,291 + EX31_RS09555 0.54 -0.1
116,291 + EX31_RS09555 0.54 -1.0
116,291 + EX31_RS09555 0.54 -1.9
116,292 - EX31_RS09555 0.54 -0.5
116,292 - EX31_RS09555 0.54 +1.5
116,353 + EX31_RS09555 0.58 -0.8
116,443 - EX31_RS09555 0.65 -1.8
116,530 - EX31_RS09555 0.71 -0.2
116,530 - EX31_RS09555 0.71 -1.5
116,536 + EX31_RS09555 0.72 -0.0
116,536 + EX31_RS09555 0.72 +0.0
116,537 - EX31_RS09555 0.72 -0.2

Or see this region's nucleotide sequence