Strain Fitness in Rahnella sp. WP5 around EX31_RS08270

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08260 and EX31_RS08265 are separated by 63 nucleotidesEX31_RS08265 and EX31_RS08270 are separated by 70 nucleotidesEX31_RS08270 and EX31_RS08275 are separated by 51 nucleotides EX31_RS08260: EX31_RS08260 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 146,837 to 147,322 _RS08260 EX31_RS08265: EX31_RS08265 - phosphatase PAP2 family protein, at 147,386 to 148,084 _RS08265 EX31_RS08270: EX31_RS08270 - DUF2000 domain-containing protein, at 148,155 to 148,592 _RS08270 EX31_RS08275: EX31_RS08275 - AraC family transcriptional regulator, at 148,644 to 149,483 _RS08275 Position (kb) 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 147.199 kb on + strand, within EX31_RS08260at 147.387 kb on + strandat 147.530 kb on + strand, within EX31_RS08265at 147.530 kb on + strand, within EX31_RS08265at 147.530 kb on + strand, within EX31_RS08265at 147.531 kb on - strand, within EX31_RS08265at 147.549 kb on + strand, within EX31_RS08265at 147.629 kb on - strand, within EX31_RS08265at 147.631 kb on + strand, within EX31_RS08265at 147.631 kb on + strand, within EX31_RS08265at 147.631 kb on + strand, within EX31_RS08265at 147.631 kb on + strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.632 kb on - strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.700 kb on + strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.701 kb on - strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.702 kb on + strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.703 kb on - strand, within EX31_RS08265at 147.766 kb on + strand, within EX31_RS08265at 147.766 kb on + strand, within EX31_RS08265at 147.767 kb on - strand, within EX31_RS08265at 147.767 kb on - strand, within EX31_RS08265at 147.969 kb on + strand, within EX31_RS08265at 147.969 kb on + strand, within EX31_RS08265at 147.970 kb on - strand, within EX31_RS08265at 147.970 kb on - strand, within EX31_RS08265at 148.000 kb on + strand, within EX31_RS08265at 148.078 kb on + strandat 148.078 kb on + strandat 148.078 kb on + strandat 148.079 kb on - strandat 148.079 kb on - strandat 148.099 kb on + strandat 148.100 kb on - strandat 148.100 kb on - strandat 148.102 kb on + strandat 148.102 kb on + strandat 148.102 kb on + strandat 148.103 kb on - strandat 148.122 kb on + strandat 148.122 kb on + strandat 148.142 kb on + strandat 148.142 kb on + strandat 148.280 kb on - strand, within EX31_RS08270at 148.280 kb on - strand, within EX31_RS08270at 148.338 kb on - strand, within EX31_RS08270at 148.338 kb on - strand, within EX31_RS08270at 148.578 kb on + strandat 148.578 kb on + strandat 148.578 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.627 kb on + strandat 148.628 kb on - strandat 148.675 kb on + strandat 148.696 kb on + strandat 148.744 kb on - strand, within EX31_RS08275at 148.744 kb on - strand, within EX31_RS08275at 148.817 kb on + strand, within EX31_RS08275at 148.817 kb on + strand, within EX31_RS08275at 148.817 kb on + strand, within EX31_RS08275at 148.818 kb on - strand, within EX31_RS08275at 148.818 kb on - strand, within EX31_RS08275at 148.822 kb on + strand, within EX31_RS08275at 148.822 kb on + strand, within EX31_RS08275at 148.823 kb on - strand, within EX31_RS08275at 148.823 kb on - strand, within EX31_RS08275at 148.823 kb on - strand, within EX31_RS08275at 148.823 kb on - strand, within EX31_RS08275at 148.854 kb on - strand, within EX31_RS08275at 148.942 kb on + strand, within EX31_RS08275at 148.942 kb on + strand, within EX31_RS08275at 148.943 kb on - strand, within EX31_RS08275at 149.134 kb on - strand, within EX31_RS08275at 149.138 kb on + strand, within EX31_RS08275at 149.139 kb on - strand, within EX31_RS08275at 149.221 kb on + strand, within EX31_RS08275at 149.222 kb on - strand, within EX31_RS08275at 149.222 kb on - strand, within EX31_RS08275at 149.222 kb on - strand, within EX31_RS08275at 149.222 kb on - strand, within EX31_RS08275at 149.233 kb on + strand, within EX31_RS08275at 149.233 kb on + strand, within EX31_RS08275at 149.233 kb on + strand, within EX31_RS08275at 149.234 kb on - strand, within EX31_RS08275at 149.234 kb on - strand, within EX31_RS08275at 149.234 kb on - strand, within EX31_RS08275at 149.234 kb on - strand, within EX31_RS08275at 149.237 kb on + strand, within EX31_RS08275at 149.237 kb on + strand, within EX31_RS08275at 149.237 kb on + strand, within EX31_RS08275at 149.237 kb on + strand, within EX31_RS08275at 149.238 kb on - strand, within EX31_RS08275at 149.238 kb on - strand, within EX31_RS08275at 149.291 kb on + strand, within EX31_RS08275at 149.291 kb on + strand, within EX31_RS08275at 149.292 kb on - strand, within EX31_RS08275at 149.292 kb on - strand, within EX31_RS08275at 149.354 kb on - strand, within EX31_RS08275at 149.374 kb on + strand, within EX31_RS08275at 149.375 kb on - strand, within EX31_RS08275at 149.375 kb on - strand, within EX31_RS08275at 149.398 kb on + strand, within EX31_RS08275at 149.398 kb on + strand, within EX31_RS08275at 149.399 kb on - strand, within EX31_RS08275at 149.399 kb on - strand, within EX31_RS08275at 149.457 kb on + strandat 149.458 kb on - strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.484 kb on - strandat 149.504 kb on + strandat 149.504 kb on + strandat 149.505 kb on - strandat 149.505 kb on - strandat 149.522 kb on + strandat 149.587 kb on + strandat 149.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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147,199 + EX31_RS08260 0.74 -1.9
147,387 + -1.3
147,530 + EX31_RS08265 0.21 +1.7
147,530 + EX31_RS08265 0.21 -0.6
147,530 + EX31_RS08265 0.21 -0.1
147,531 - EX31_RS08265 0.21 -0.7
147,549 + EX31_RS08265 0.23 -0.5
147,629 - EX31_RS08265 0.35 -1.4
147,631 + EX31_RS08265 0.35 -0.6
147,631 + EX31_RS08265 0.35 -0.1
147,631 + EX31_RS08265 0.35 +0.8
147,631 + EX31_RS08265 0.35 -0.5
147,632 - EX31_RS08265 0.35 +0.4
147,632 - EX31_RS08265 0.35 +0.8
147,632 - EX31_RS08265 0.35 +0.1
147,632 - EX31_RS08265 0.35 +0.2
147,632 - EX31_RS08265 0.35 +0.1
147,632 - EX31_RS08265 0.35 -1.1
147,700 + EX31_RS08265 0.45 -0.4
147,700 + EX31_RS08265 0.45 -0.7
147,700 + EX31_RS08265 0.45 -1.0
147,700 + EX31_RS08265 0.45 +0.5
147,700 + EX31_RS08265 0.45 +2.2
147,700 + EX31_RS08265 0.45 -0.0
147,700 + EX31_RS08265 0.45 -0.9
147,700 + EX31_RS08265 0.45 +0.6
147,700 + EX31_RS08265 0.45 -2.4
147,701 - EX31_RS08265 0.45 -2.7
147,701 - EX31_RS08265 0.45 +0.0
147,701 - EX31_RS08265 0.45 -0.5
147,701 - EX31_RS08265 0.45 -0.2
147,701 - EX31_RS08265 0.45 -0.4
147,701 - EX31_RS08265 0.45 -0.3
147,701 - EX31_RS08265 0.45 +2.1
147,701 - EX31_RS08265 0.45 -0.8
147,701 - EX31_RS08265 0.45 -0.7
147,701 - EX31_RS08265 0.45 -0.7
147,702 + EX31_RS08265 0.45 -0.7
147,702 + EX31_RS08265 0.45 +0.1
147,702 + EX31_RS08265 0.45 -0.1
147,702 + EX31_RS08265 0.45 +0.2
147,702 + EX31_RS08265 0.45 -0.9
147,702 + EX31_RS08265 0.45 +1.4
147,702 + EX31_RS08265 0.45 +1.2
147,702 + EX31_RS08265 0.45 +0.7
147,702 + EX31_RS08265 0.45 +0.5
147,702 + EX31_RS08265 0.45 +1.1
147,703 - EX31_RS08265 0.45 +0.9
147,703 - EX31_RS08265 0.45 -0.9
147,703 - EX31_RS08265 0.45 +1.4
147,703 - EX31_RS08265 0.45 -1.0
147,703 - EX31_RS08265 0.45 +0.4
147,703 - EX31_RS08265 0.45 -0.2
147,703 - EX31_RS08265 0.45 +0.1
147,703 - EX31_RS08265 0.45 -0.2
147,703 - EX31_RS08265 0.45 -0.6
147,703 - EX31_RS08265 0.45 -0.1
147,703 - EX31_RS08265 0.45 +0.2
147,703 - EX31_RS08265 0.45 -0.4
147,766 + EX31_RS08265 0.54 +0.2
147,766 + EX31_RS08265 0.54 +0.4
147,767 - EX31_RS08265 0.55 +0.7
147,767 - EX31_RS08265 0.55 +0.4
147,969 + EX31_RS08265 0.83 +0.5
147,969 + EX31_RS08265 0.83 -0.2
147,970 - EX31_RS08265 0.84 -0.1
147,970 - EX31_RS08265 0.84 +0.3
148,000 + EX31_RS08265 0.88 -1.1
148,078 + -0.7
148,078 + -0.4
148,078 + +1.2
148,079 - -0.6
148,079 - +0.3
148,099 + +0.4
148,100 - -2.1
148,100 - -1.3
148,102 + -0.6
148,102 + -0.7
148,102 + +0.4
148,103 - +0.6
148,122 + +0.7
148,122 + +0.9
148,142 + -0.5
148,142 + -0.7
148,280 - EX31_RS08270 0.29 +0.4
148,280 - EX31_RS08270 0.29 +0.8
148,338 - EX31_RS08270 0.42 +0.4
148,338 - EX31_RS08270 0.42 +1.0
148,578 + +0.9
148,578 + -0.6
148,578 + +0.8
148,586 + -0.3
148,586 + +0.3
148,586 + +0.0
148,627 + +0.1
148,628 - -0.1
148,675 + +0.2
148,696 + -0.2
148,744 - EX31_RS08275 0.12 +0.7
148,744 - EX31_RS08275 0.12 -0.6
148,817 + EX31_RS08275 0.21 -0.3
148,817 + EX31_RS08275 0.21 -1.4
148,817 + EX31_RS08275 0.21 +0.7
148,818 - EX31_RS08275 0.21 +0.2
148,818 - EX31_RS08275 0.21 +0.1
148,822 + EX31_RS08275 0.21 +0.0
148,822 + EX31_RS08275 0.21 -0.2
148,823 - EX31_RS08275 0.21 -1.2
148,823 - EX31_RS08275 0.21 +1.6
148,823 - EX31_RS08275 0.21 -1.4
148,823 - EX31_RS08275 0.21 -0.1
148,854 - EX31_RS08275 0.25 -0.2
148,942 + EX31_RS08275 0.35 -0.3
148,942 + EX31_RS08275 0.35 -0.4
148,943 - EX31_RS08275 0.36 +1.1
149,134 - EX31_RS08275 0.58 -0.8
149,138 + EX31_RS08275 0.59 +0.4
149,139 - EX31_RS08275 0.59 +0.5
149,221 + EX31_RS08275 0.69 +1.0
149,222 - EX31_RS08275 0.69 -0.1
149,222 - EX31_RS08275 0.69 +1.2
149,222 - EX31_RS08275 0.69 +1.3
149,222 - EX31_RS08275 0.69 +0.5
149,233 + EX31_RS08275 0.70 +0.7
149,233 + EX31_RS08275 0.70 -0.6
149,233 + EX31_RS08275 0.70 +1.1
149,234 - EX31_RS08275 0.70 -1.6
149,234 - EX31_RS08275 0.70 +0.0
149,234 - EX31_RS08275 0.70 +1.2
149,234 - EX31_RS08275 0.70 -0.8
149,237 + EX31_RS08275 0.71 -1.4
149,237 + EX31_RS08275 0.71 +1.0
149,237 + EX31_RS08275 0.71 +0.8
149,237 + EX31_RS08275 0.71 +2.8
149,238 - EX31_RS08275 0.71 -0.9
149,238 - EX31_RS08275 0.71 +0.3
149,291 + EX31_RS08275 0.77 +1.2
149,291 + EX31_RS08275 0.77 -0.3
149,292 - EX31_RS08275 0.77 +1.0
149,292 - EX31_RS08275 0.77 -0.1
149,354 - EX31_RS08275 0.85 -0.6
149,374 + EX31_RS08275 0.87 +1.0
149,375 - EX31_RS08275 0.87 -1.6
149,375 - EX31_RS08275 0.87 +0.4
149,398 + EX31_RS08275 0.90 -0.8
149,398 + EX31_RS08275 0.90 +0.7
149,399 - EX31_RS08275 0.90 +0.0
149,399 - EX31_RS08275 0.90 +0.4
149,457 + -0.9
149,458 - +0.3
149,483 + +1.5
149,483 + -1.1
149,483 + -0.2
149,483 + +0.3
149,483 + +0.5
149,483 + +0.4
149,483 + -0.0
149,483 + -0.1
149,483 + -0.3
149,483 + +0.7
149,483 + +0.3
149,483 + +0.1
149,483 + +0.9
149,483 + -2.7
149,483 + +1.5
149,483 + +0.0
149,484 - -0.1
149,484 - -1.2
149,484 - -0.4
149,484 - +1.4
149,484 - -0.4
149,484 - -0.6
149,484 - +0.5
149,484 - -0.2
149,484 - -1.2
149,484 - +0.2
149,484 - +1.1
149,484 - -0.3
149,484 - +0.6
149,484 - +0.5
149,504 + -0.5
149,504 + -0.1
149,505 - -0.2
149,505 - +0.8
149,522 + +0.5
149,587 + -1.2
149,587 + +0.5

Or see this region's nucleotide sequence