Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06855 and EX31_RS06860 are separated by 64 nucleotides EX31_RS06860 and EX31_RS06865 are separated by 207 nucleotides
EX31_RS06855: EX31_RS06855 - bile acid:sodium symporter, at 158,947 to 159,966
_RS06855
EX31_RS06860: EX31_RS06860 - adenosine deaminase, at 160,031 to 161,029
_RS06860
EX31_RS06865: EX31_RS06865 - pyridoxal phosphate-dependent aminotransferase, at 161,237 to 162,412
_RS06865
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.041 kb on - strand at 159.041 kb on - strand at 159.059 kb on - strand, within EX31_RS06855 at 159.094 kb on - strand, within EX31_RS06855 at 159.254 kb on - strand, within EX31_RS06855 at 159.307 kb on + strand, within EX31_RS06855 at 159.308 kb on - strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.310 kb on - strand, within EX31_RS06855 at 159.310 kb on - strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.415 kb on - strand, within EX31_RS06855 at 159.456 kb on + strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.581 kb on + strand, within EX31_RS06855 at 159.581 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855 at 159.899 kb on - strand at 160.156 kb on + strand, within EX31_RS06860 at 160.157 kb on - strand, within EX31_RS06860 at 160.159 kb on - strand, within EX31_RS06860 at 160.280 kb on + strand, within EX31_RS06860 at 160.280 kb on + strand, within EX31_RS06860 at 160.281 kb on - strand, within EX31_RS06860 at 160.281 kb on - strand, within EX31_RS06860 at 160.637 kb on - strand, within EX31_RS06860 at 160.722 kb on + strand, within EX31_RS06860 at 160.722 kb on + strand, within EX31_RS06860 at 160.722 kb on + strand, within EX31_RS06860 at 160.722 kb on + strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.723 kb on - strand, within EX31_RS06860 at 160.725 kb on + strand, within EX31_RS06860 at 160.748 kb on - strand, within EX31_RS06860 at 160.748 kb on - strand, within EX31_RS06860 at 160.749 kb on + strand, within EX31_RS06860 at 161.043 kb on + strand at 161.044 kb on - strand at 161.044 kb on - strand at 161.044 kb on - strand at 161.044 kb on - strand at 161.066 kb on + strand at 161.066 kb on + strand at 161.066 kb on + strand at 161.067 kb on - strand at 161.068 kb on + strand at 161.068 kb on + strand at 161.068 kb on + strand at 161.068 kb on + strand at 161.069 kb on - strand at 161.078 kb on + strand at 161.078 kb on + strand at 161.239 kb on - strand at 161.255 kb on - strand at 161.347 kb on + strand at 161.348 kb on - strand at 161.348 kb on - strand at 161.348 kb on - strand at 161.348 kb on - strand at 161.348 kb on - strand at 161.348 kb on - strand at 161.445 kb on + strand, within EX31_RS06865 at 161.445 kb on + strand, within EX31_RS06865 at 161.508 kb on + strand, within EX31_RS06865 at 161.525 kb on + strand, within EX31_RS06865 at 161.525 kb on + strand, within EX31_RS06865 at 161.792 kb on - strand, within EX31_RS06865
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 159,041 - -1.0 159,041 - +1.0 159,059 - EX31_RS06855 0.11 -0.7 159,094 - EX31_RS06855 0.14 +0.1 159,254 - EX31_RS06855 0.30 +0.4 159,307 + EX31_RS06855 0.35 +0.5 159,308 - EX31_RS06855 0.35 -1.5 159,309 + EX31_RS06855 0.35 -0.1 159,309 + EX31_RS06855 0.35 -0.0 159,309 + EX31_RS06855 0.35 -1.0 159,310 - EX31_RS06855 0.36 +1.5 159,310 - EX31_RS06855 0.36 +0.5 159,414 + EX31_RS06855 0.46 +1.1 159,414 + EX31_RS06855 0.46 -0.5 159,414 + EX31_RS06855 0.46 +1.3 159,414 + EX31_RS06855 0.46 +0.5 159,415 - EX31_RS06855 0.46 -0.2 159,456 + EX31_RS06855 0.50 -0.8 159,457 - EX31_RS06855 0.50 -0.2 159,457 - EX31_RS06855 0.50 -0.8 159,457 - EX31_RS06855 0.50 +1.1 159,581 + EX31_RS06855 0.62 +0.9 159,581 + EX31_RS06855 0.62 -0.5 159,583 + EX31_RS06855 0.62 +1.5 159,583 + EX31_RS06855 0.62 -0.5 159,583 + EX31_RS06855 0.62 +2.5 159,583 + EX31_RS06855 0.62 +0.5 159,583 + EX31_RS06855 0.62 -0.8 159,584 - EX31_RS06855 0.62 +0.9 159,584 - EX31_RS06855 0.62 -1.5 159,584 - EX31_RS06855 0.62 +0.2 159,584 - EX31_RS06855 0.62 +0.5 159,703 + EX31_RS06855 0.74 +0.5 159,703 + EX31_RS06855 0.74 +1.4 159,703 + EX31_RS06855 0.74 +0.1 159,899 - +1.5 160,156 + EX31_RS06860 0.13 -0.9 160,157 - EX31_RS06860 0.13 +0.5 160,159 - EX31_RS06860 0.13 -0.0 160,280 + EX31_RS06860 0.25 -0.0 160,280 + EX31_RS06860 0.25 +0.2 160,281 - EX31_RS06860 0.25 -0.2 160,281 - EX31_RS06860 0.25 -0.5 160,637 - EX31_RS06860 0.61 -1.8 160,722 + EX31_RS06860 0.69 -1.3 160,722 + EX31_RS06860 0.69 -0.2 160,722 + EX31_RS06860 0.69 -1.5 160,722 + EX31_RS06860 0.69 -0.1 160,723 - EX31_RS06860 0.69 +0.3 160,723 - EX31_RS06860 0.69 -0.0 160,723 - EX31_RS06860 0.69 +1.5 160,723 - EX31_RS06860 0.69 +0.9 160,723 - EX31_RS06860 0.69 +0.2 160,723 - EX31_RS06860 0.69 +1.4 160,723 - EX31_RS06860 0.69 -0.5 160,725 + EX31_RS06860 0.69 +0.8 160,748 - EX31_RS06860 0.72 +0.1 160,748 - EX31_RS06860 0.72 -0.5 160,749 + EX31_RS06860 0.72 -1.6 161,043 + +2.0 161,044 - +1.9 161,044 - -1.5 161,044 - -1.2 161,044 - +0.3 161,066 + -0.0 161,066 + -1.0 161,066 + -1.3 161,067 - -0.1 161,068 + -2.0 161,068 + +2.1 161,068 + -0.2 161,068 + -0.3 161,069 - +1.1 161,078 + -0.2 161,078 + -1.3 161,239 - -0.5 161,255 - -1.0 161,347 + -1.5 161,348 - -1.5 161,348 - -1.6 161,348 - +0.5 161,348 - +1.0 161,348 - +0.1 161,348 - +1.3 161,445 + EX31_RS06865 0.18 -0.3 161,445 + EX31_RS06865 0.18 -1.5 161,508 + EX31_RS06865 0.23 -0.0 161,525 + EX31_RS06865 0.24 +0.8 161,525 + EX31_RS06865 0.24 -0.0 161,792 - EX31_RS06865 0.47 +2.0
Or see this region's nucleotide sequence