Strain Fitness in Rahnella sp. WP5 around EX31_RS03465

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS03460 and EX31_RS03465 are separated by 330 nucleotidesEX31_RS03465 and EX31_RS03475 are separated by 208 nucleotides EX31_RS03460: EX31_RS03460 - glycerophosphodiester phosphodiesterase, at 181,664 to 183,994 _RS03460 EX31_RS03465: EX31_RS03465 - dihydrolipoyl dehydrogenase, at 184,325 to 185,752 _RS03465 EX31_RS03475: EX31_RS03475 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 185,961 to 187,859 _RS03475 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.339 kb on - strand, within EX31_RS03460at 183.419 kb on + strand, within EX31_RS03460at 183.661 kb on + strand, within EX31_RS03460at 183.675 kb on + strand, within EX31_RS03460at 183.675 kb on + strand, within EX31_RS03460at 183.675 kb on + strand, within EX31_RS03460at 183.770 kb on + strandat 183.770 kb on + strandat 183.771 kb on - strandat 183.779 kb on - strandat 183.788 kb on + strandat 183.789 kb on - strandat 183.789 kb on - strandat 183.789 kb on - strandat 183.878 kb on - strandat 183.878 kb on - strandat 183.878 kb on - strandat 183.879 kb on + strandat 183.879 kb on + strandat 183.880 kb on - strandat 183.940 kb on + strandat 183.967 kb on + strandat 183.994 kb on + strandat 184.043 kb on + strandat 184.043 kb on + strandat 184.088 kb on + strandat 184.091 kb on - strandat 184.252 kb on + strandat 185.766 kb on - strandat 185.962 kb on + strandat 185.963 kb on - strandat 185.963 kb on - strandat 185.963 kb on - strandat 185.963 kb on - strandat 186.270 kb on - strand, within EX31_RS03475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
183,339 - EX31_RS03460 0.72 -0.4
183,419 + EX31_RS03460 0.75 -0.5
183,661 + EX31_RS03460 0.86 -1.4
183,675 + EX31_RS03460 0.86 +1.4
183,675 + EX31_RS03460 0.86 -0.8
183,675 + EX31_RS03460 0.86 +1.1
183,770 + +0.5
183,770 + +1.1
183,771 - +0.5
183,779 - +0.7
183,788 + -1.2
183,789 - +0.4
183,789 - -0.4
183,789 - +0.7
183,878 - +0.2
183,878 - -2.1
183,878 - +0.8
183,879 + +1.1
183,879 + -0.9
183,880 - -0.1
183,940 + -1.2
183,967 + -1.2
183,994 + -2.0
184,043 + +0.7
184,043 + +0.1
184,088 + +0.7
184,091 - -1.5
184,252 + +0.2
185,766 - -0.5
185,962 + -1.0
185,963 - +0.9
185,963 - +0.3
185,963 - -1.9
185,963 - +0.4
186,270 - EX31_RS03475 0.16 +1.1

Or see this region's nucleotide sequence