Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03170 and EX31_RS03175 are separated by 207 nucleotides EX31_RS03175 and EX31_RS03180 are separated by 183 nucleotides EX31_RS03180 and EX31_RS03185 overlap by 1 nucleotides
EX31_RS03170: EX31_RS03170 - serine endoprotease DegP, at 119,009 to 120,460
_RS03170
EX31_RS03175: EX31_RS03175 - dGTPase, at 120,668 to 122,182
_RS03175
EX31_RS03180: EX31_RS03180 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 122,366 to 123,070
_RS03180
EX31_RS03185: EX31_RS03185 - vitamin B12 ABC transporter substrate-binding protein BtuF, at 123,070 to 123,882
_RS03185
Position (kb) 120
121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 119.741 kb on - strand, within EX31_RS03170 at 119.741 kb on - strand, within EX31_RS03170 at 119.781 kb on + strand, within EX31_RS03170 at 119.782 kb on - strand, within EX31_RS03170 at 119.914 kb on + strand, within EX31_RS03170 at 119.915 kb on - strand, within EX31_RS03170 at 119.943 kb on - strand, within EX31_RS03170 at 120.001 kb on + strand, within EX31_RS03170 at 120.001 kb on + strand, within EX31_RS03170 at 120.020 kb on + strand, within EX31_RS03170 at 120.021 kb on - strand, within EX31_RS03170 at 120.021 kb on - strand, within EX31_RS03170 at 120.021 kb on - strand, within EX31_RS03170 at 120.021 kb on - strand, within EX31_RS03170 at 120.069 kb on + strand, within EX31_RS03170 at 120.069 kb on + strand, within EX31_RS03170 at 120.070 kb on - strand, within EX31_RS03170 at 120.070 kb on - strand, within EX31_RS03170 at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.325 kb on + strand at 120.326 kb on - strand at 120.326 kb on - strand at 120.326 kb on - strand at 120.326 kb on - strand at 120.326 kb on - strand at 120.326 kb on - strand at 120.338 kb on - strand at 120.428 kb on + strand at 120.429 kb on - strand at 120.443 kb on + strand at 120.444 kb on - strand at 120.476 kb on - strand at 120.498 kb on + strand at 120.499 kb on - strand at 120.534 kb on + strand at 120.534 kb on + strand at 120.535 kb on - strand at 120.535 kb on - strand at 120.535 kb on - strand at 120.535 kb on - strand at 120.537 kb on + strand at 120.537 kb on + strand at 120.537 kb on + strand at 120.538 kb on - strand at 120.538 kb on - strand at 120.538 kb on - strand at 120.538 kb on - strand at 120.541 kb on - strand at 120.576 kb on - strand at 120.670 kb on - strand at 120.702 kb on + strand at 120.703 kb on - strand at 120.703 kb on - strand at 120.703 kb on - strand at 120.731 kb on - strand at 120.732 kb on + strand at 120.732 kb on + strand at 120.732 kb on + strand at 120.732 kb on + strand at 120.733 kb on - strand at 120.733 kb on - strand at 120.757 kb on - strand at 120.760 kb on - strand at 120.760 kb on - strand at 120.822 kb on + strand, within EX31_RS03175 at 120.823 kb on - strand, within EX31_RS03175 at 120.823 kb on - strand, within EX31_RS03175 at 120.851 kb on - strand, within EX31_RS03175 at 120.890 kb on - strand, within EX31_RS03175 at 120.902 kb on + strand, within EX31_RS03175 at 120.946 kb on - strand, within EX31_RS03175 at 120.946 kb on - strand, within EX31_RS03175 at 120.957 kb on - strand, within EX31_RS03175 at 120.957 kb on - strand, within EX31_RS03175 at 120.984 kb on - strand, within EX31_RS03175 at 120.984 kb on - strand, within EX31_RS03175 at 121.017 kb on - strand, within EX31_RS03175 at 121.039 kb on + strand, within EX31_RS03175 at 121.042 kb on - strand, within EX31_RS03175 at 121.112 kb on - strand, within EX31_RS03175 at 121.118 kb on + strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.119 kb on - strand, within EX31_RS03175 at 121.121 kb on - strand, within EX31_RS03175 at 121.121 kb on - strand, within EX31_RS03175 at 121.121 kb on - strand, within EX31_RS03175 at 121.123 kb on + strand, within EX31_RS03175 at 121.124 kb on - strand, within EX31_RS03175 at 121.124 kb on - strand, within EX31_RS03175 at 121.124 kb on - strand, within EX31_RS03175 at 121.163 kb on + strand, within EX31_RS03175 at 121.164 kb on - strand, within EX31_RS03175 at 121.164 kb on - strand, within EX31_RS03175 at 121.164 kb on - strand, within EX31_RS03175 at 121.187 kb on - strand, within EX31_RS03175 at 121.194 kb on + strand, within EX31_RS03175 at 121.194 kb on + strand, within EX31_RS03175 at 121.194 kb on + strand, within EX31_RS03175 at 121.195 kb on - strand, within EX31_RS03175 at 121.226 kb on - strand, within EX31_RS03175 at 121.240 kb on - strand, within EX31_RS03175 at 121.305 kb on + strand, within EX31_RS03175 at 121.306 kb on - strand, within EX31_RS03175 at 121.306 kb on - strand, within EX31_RS03175 at 121.309 kb on + strand, within EX31_RS03175 at 121.309 kb on + strand, within EX31_RS03175 at 121.309 kb on + strand, within EX31_RS03175 at 121.309 kb on + strand, within EX31_RS03175 at 121.309 kb on + strand, within EX31_RS03175 at 121.312 kb on - strand, within EX31_RS03175 at 121.312 kb on - strand, within EX31_RS03175 at 121.312 kb on - strand, within EX31_RS03175 at 121.312 kb on - strand, within EX31_RS03175 at 121.378 kb on + strand, within EX31_RS03175 at 121.379 kb on - strand, within EX31_RS03175 at 121.396 kb on + strand, within EX31_RS03175 at 121.396 kb on + strand, within EX31_RS03175 at 121.397 kb on - strand, within EX31_RS03175 at 121.397 kb on - strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.401 kb on + strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.402 kb on - strand, within EX31_RS03175 at 121.406 kb on - strand, within EX31_RS03175 at 121.503 kb on + strand, within EX31_RS03175 at 121.503 kb on + strand, within EX31_RS03175 at 121.503 kb on + strand, within EX31_RS03175 at 121.503 kb on + strand, within EX31_RS03175 at 121.504 kb on - strand, within EX31_RS03175 at 121.523 kb on - strand, within EX31_RS03175 at 121.546 kb on + strand, within EX31_RS03175 at 121.547 kb on - strand, within EX31_RS03175 at 121.548 kb on + strand, within EX31_RS03175 at 121.548 kb on + strand, within EX31_RS03175 at 121.548 kb on + strand, within EX31_RS03175 at 121.548 kb on + strand, within EX31_RS03175 at 121.549 kb on - strand, within EX31_RS03175 at 121.549 kb on - strand, within EX31_RS03175 at 121.549 kb on - strand, within EX31_RS03175 at 121.575 kb on + strand, within EX31_RS03175 at 121.576 kb on - strand, within EX31_RS03175 at 121.685 kb on - strand, within EX31_RS03175 at 121.771 kb on + strand, within EX31_RS03175 at 122.066 kb on - strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.106 kb on + strand at 122.107 kb on - strand at 122.107 kb on - strand at 122.107 kb on - strand at 122.107 kb on - strand at 122.107 kb on - strand at 122.107 kb on - strand at 122.235 kb on + strand at 122.267 kb on - strand at 122.273 kb on - strand at 122.273 kb on - strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.281 kb on + strand at 122.282 kb on - strand at 122.282 kb on - strand at 122.282 kb on - strand at 122.282 kb on - strand at 122.308 kb on + strand at 122.359 kb on + strand at 122.359 kb on + strand at 122.359 kb on + strand at 123.068 kb on + strand at 123.069 kb on - strand at 123.092 kb on + strand at 123.092 kb on + strand at 123.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 119,741 - EX31_RS03170 0.50 -0.6 119,741 - EX31_RS03170 0.50 -0.1 119,781 + EX31_RS03170 0.53 +0.9 119,782 - EX31_RS03170 0.53 -0.5 119,914 + EX31_RS03170 0.62 -0.6 119,915 - EX31_RS03170 0.62 +1.1 119,943 - EX31_RS03170 0.64 -0.6 120,001 + EX31_RS03170 0.68 -1.1 120,001 + EX31_RS03170 0.68 +0.6 120,020 + EX31_RS03170 0.70 -0.6 120,021 - EX31_RS03170 0.70 -0.3 120,021 - EX31_RS03170 0.70 +0.1 120,021 - EX31_RS03170 0.70 +0.6 120,021 - EX31_RS03170 0.70 +0.4 120,069 + EX31_RS03170 0.73 +1.1 120,069 + EX31_RS03170 0.73 +0.3 120,070 - EX31_RS03170 0.73 +0.8 120,070 - EX31_RS03170 0.73 +0.2 120,325 + +0.9 120,325 + -2.6 120,325 + +0.2 120,325 + -1.3 120,325 + -0.4 120,325 + +0.7 120,325 + +1.1 120,325 + +0.9 120,326 - -0.3 120,326 - -1.6 120,326 - -0.2 120,326 - -0.2 120,326 - -0.6 120,326 - -0.7 120,338 - -2.1 120,428 + +1.6 120,429 - -0.9 120,443 + +1.5 120,444 - +0.3 120,476 - +2.1 120,498 + +1.1 120,499 - +0.3 120,534 + +1.6 120,534 + -0.1 120,535 - -0.6 120,535 - +0.1 120,535 - -2.6 120,535 - +0.4 120,537 + -2.3 120,537 + +0.4 120,537 + +0.4 120,538 - -0.2 120,538 - -0.4 120,538 - -2.1 120,538 - -0.5 120,541 - -1.1 120,576 - -1.8 120,670 - -0.7 120,702 + -1.1 120,703 - +0.1 120,703 - +0.1 120,703 - +0.1 120,731 - +0.5 120,732 + +0.3 120,732 + +1.1 120,732 + -0.4 120,732 + -0.9 120,733 - +0.3 120,733 - +1.5 120,757 - -1.5 120,760 - -0.5 120,760 - +0.9 120,822 + EX31_RS03175 0.10 +0.1 120,823 - EX31_RS03175 0.10 -0.8 120,823 - EX31_RS03175 0.10 -1.1 120,851 - EX31_RS03175 0.12 +0.7 120,890 - EX31_RS03175 0.15 +3.2 120,902 + EX31_RS03175 0.15 +0.5 120,946 - EX31_RS03175 0.18 +1.2 120,946 - EX31_RS03175 0.18 -0.4 120,957 - EX31_RS03175 0.19 +0.8 120,957 - EX31_RS03175 0.19 +0.6 120,984 - EX31_RS03175 0.21 +0.1 120,984 - EX31_RS03175 0.21 -1.9 121,017 - EX31_RS03175 0.23 -2.0 121,039 + EX31_RS03175 0.24 -0.3 121,042 - EX31_RS03175 0.25 -1.4 121,112 - EX31_RS03175 0.29 -0.0 121,118 + EX31_RS03175 0.30 +0.1 121,119 - EX31_RS03175 0.30 -0.4 121,119 - EX31_RS03175 0.30 -0.2 121,119 - EX31_RS03175 0.30 +0.8 121,119 - EX31_RS03175 0.30 -0.5 121,119 - EX31_RS03175 0.30 -0.2 121,119 - EX31_RS03175 0.30 -0.1 121,119 - EX31_RS03175 0.30 +0.4 121,121 - EX31_RS03175 0.30 +1.1 121,121 - EX31_RS03175 0.30 +1.1 121,121 - EX31_RS03175 0.30 +0.1 121,123 + EX31_RS03175 0.30 -0.8 121,124 - EX31_RS03175 0.30 -0.9 121,124 - EX31_RS03175 0.30 +0.6 121,124 - EX31_RS03175 0.30 -1.4 121,163 + EX31_RS03175 0.33 +0.1 121,164 - EX31_RS03175 0.33 -0.3 121,164 - EX31_RS03175 0.33 +1.6 121,164 - EX31_RS03175 0.33 +0.1 121,187 - EX31_RS03175 0.34 +0.6 121,194 + EX31_RS03175 0.35 +0.1 121,194 + EX31_RS03175 0.35 +1.8 121,194 + EX31_RS03175 0.35 +0.7 121,195 - EX31_RS03175 0.35 +0.6 121,226 - EX31_RS03175 0.37 -1.8 121,240 - EX31_RS03175 0.38 -1.5 121,305 + EX31_RS03175 0.42 +0.2 121,306 - EX31_RS03175 0.42 -1.0 121,306 - EX31_RS03175 0.42 +1.8 121,309 + EX31_RS03175 0.42 -0.4 121,309 + EX31_RS03175 0.42 +0.1 121,309 + EX31_RS03175 0.42 +0.1 121,309 + EX31_RS03175 0.42 -0.4 121,309 + EX31_RS03175 0.42 -0.3 121,312 - EX31_RS03175 0.43 -0.1 121,312 - EX31_RS03175 0.43 +0.6 121,312 - EX31_RS03175 0.43 -0.5 121,312 - EX31_RS03175 0.43 +1.5 121,378 + EX31_RS03175 0.47 -0.0 121,379 - EX31_RS03175 0.47 +0.1 121,396 + EX31_RS03175 0.48 +0.6 121,396 + EX31_RS03175 0.48 +0.8 121,397 - EX31_RS03175 0.48 +0.9 121,397 - EX31_RS03175 0.48 -1.0 121,401 + EX31_RS03175 0.48 -0.3 121,401 + EX31_RS03175 0.48 -0.2 121,401 + EX31_RS03175 0.48 +0.4 121,401 + EX31_RS03175 0.48 -0.4 121,401 + EX31_RS03175 0.48 +1.4 121,401 + EX31_RS03175 0.48 +0.2 121,401 + EX31_RS03175 0.48 -0.3 121,401 + EX31_RS03175 0.48 +0.2 121,401 + EX31_RS03175 0.48 -0.1 121,401 + EX31_RS03175 0.48 +0.1 121,401 + EX31_RS03175 0.48 -0.5 121,401 + EX31_RS03175 0.48 +0.1 121,401 + EX31_RS03175 0.48 +0.1 121,401 + EX31_RS03175 0.48 -0.4 121,401 + EX31_RS03175 0.48 -0.5 121,401 + EX31_RS03175 0.48 +0.3 121,402 - EX31_RS03175 0.48 +1.1 121,402 - EX31_RS03175 0.48 -1.1 121,402 - EX31_RS03175 0.48 +1.1 121,402 - EX31_RS03175 0.48 +0.7 121,402 - EX31_RS03175 0.48 +0.3 121,402 - EX31_RS03175 0.48 -0.4 121,402 - EX31_RS03175 0.48 +1.1 121,402 - EX31_RS03175 0.48 +2.5 121,402 - EX31_RS03175 0.48 -0.6 121,402 - EX31_RS03175 0.48 -1.1 121,402 - EX31_RS03175 0.48 +0.2 121,402 - EX31_RS03175 0.48 -0.8 121,402 - EX31_RS03175 0.48 -0.9 121,402 - EX31_RS03175 0.48 +0.0 121,402 - EX31_RS03175 0.48 -1.1 121,402 - EX31_RS03175 0.48 +1.2 121,406 - EX31_RS03175 0.49 -1.5 121,503 + EX31_RS03175 0.55 +0.5 121,503 + EX31_RS03175 0.55 +0.2 121,503 + EX31_RS03175 0.55 +0.1 121,503 + EX31_RS03175 0.55 -0.7 121,504 - EX31_RS03175 0.55 -0.1 121,523 - EX31_RS03175 0.56 -0.4 121,546 + EX31_RS03175 0.58 +0.5 121,547 - EX31_RS03175 0.58 -0.7 121,548 + EX31_RS03175 0.58 +0.3 121,548 + EX31_RS03175 0.58 -1.1 121,548 + EX31_RS03175 0.58 -0.5 121,548 + EX31_RS03175 0.58 -0.0 121,549 - EX31_RS03175 0.58 -0.2 121,549 - EX31_RS03175 0.58 +0.3 121,549 - EX31_RS03175 0.58 +1.1 121,575 + EX31_RS03175 0.60 +1.1 121,576 - EX31_RS03175 0.60 -2.6 121,685 - EX31_RS03175 0.67 +2.4 121,771 + EX31_RS03175 0.73 +1.1 122,066 - +0.9 122,106 + -0.3 122,106 + -1.3 122,106 + -0.1 122,106 + +1.1 122,106 + +0.1 122,106 + +0.8 122,106 + -0.3 122,106 + +0.6 122,106 + -0.6 122,107 - -0.9 122,107 - +0.3 122,107 - +0.4 122,107 - +0.6 122,107 - -0.7 122,107 - +0.1 122,235 + +0.2 122,267 - +0.6 122,273 - +0.2 122,273 - +0.9 122,281 + +0.4 122,281 + -0.1 122,281 + -0.3 122,281 + -0.9 122,281 + +0.7 122,281 + -0.4 122,281 + +0.6 122,281 + -1.3 122,282 - -1.3 122,282 - +0.1 122,282 - -0.1 122,282 - +2.4 122,308 + +3.1 122,359 + +1.9 122,359 + +1.1 122,359 + -0.2 123,068 + -2.2 123,069 - -0.5 123,092 + -0.5 123,092 + +0.2 123,092 + +0.1
Or see this region's nucleotide sequence