Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03050 and EX31_RS03055 overlap by 1 nucleotides EX31_RS03055 and EX31_RS03060 are separated by 44 nucleotides EX31_RS03060 and EX31_RS03065 are separated by 94 nucleotides
EX31_RS03050: EX31_RS03050 - transporter substrate-binding domain-containing protein, at 91,868 to 92,686
_RS03050
EX31_RS03055: EX31_RS03055 - amino acid ABC transporter permease, at 92,686 to 93,510
_RS03055
EX31_RS03060: EX31_RS03060 - pyridoxal phosphate-dependent aminotransferase, at 93,555 to 94,691
_RS03060
EX31_RS03065: EX31_RS03065 - chitinase, at 94,786 to 96,570
_RS03065
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.665 kb on + strand at 92.665 kb on + strand at 92.665 kb on + strand at 92.666 kb on - strand at 92.666 kb on - strand at 92.666 kb on - strand at 92.668 kb on + strand at 92.668 kb on + strand at 92.685 kb on - strand at 92.685 kb on - strand at 92.892 kb on + strand, within EX31_RS03055 at 92.892 kb on + strand, within EX31_RS03055 at 92.916 kb on + strand, within EX31_RS03055 at 92.916 kb on + strand, within EX31_RS03055 at 92.916 kb on + strand, within EX31_RS03055 at 92.917 kb on - strand, within EX31_RS03055 at 92.917 kb on - strand, within EX31_RS03055 at 93.019 kb on + strand, within EX31_RS03055 at 93.019 kb on + strand, within EX31_RS03055 at 93.020 kb on - strand, within EX31_RS03055 at 93.066 kb on + strand, within EX31_RS03055 at 93.066 kb on + strand, within EX31_RS03055 at 93.066 kb on + strand, within EX31_RS03055 at 93.067 kb on - strand, within EX31_RS03055 at 93.070 kb on + strand, within EX31_RS03055 at 93.070 kb on + strand, within EX31_RS03055 at 93.070 kb on + strand, within EX31_RS03055 at 93.070 kb on + strand, within EX31_RS03055 at 93.071 kb on - strand, within EX31_RS03055 at 93.071 kb on - strand, within EX31_RS03055 at 93.306 kb on + strand, within EX31_RS03055 at 93.306 kb on + strand, within EX31_RS03055 at 93.307 kb on - strand, within EX31_RS03055 at 93.307 kb on - strand, within EX31_RS03055 at 93.307 kb on - strand, within EX31_RS03055 at 93.307 kb on - strand, within EX31_RS03055 at 93.394 kb on + strand, within EX31_RS03055 at 93.394 kb on + strand, within EX31_RS03055 at 93.394 kb on + strand, within EX31_RS03055 at 93.394 kb on + strand, within EX31_RS03055 at 93.394 kb on + strand, within EX31_RS03055 at 93.395 kb on - strand, within EX31_RS03055 at 93.395 kb on - strand, within EX31_RS03055 at 93.395 kb on - strand, within EX31_RS03055 at 93.395 kb on - strand, within EX31_RS03055 at 93.400 kb on + strand, within EX31_RS03055 at 93.400 kb on + strand, within EX31_RS03055 at 93.400 kb on + strand, within EX31_RS03055 at 93.400 kb on + strand, within EX31_RS03055 at 93.400 kb on + strand, within EX31_RS03055 at 93.401 kb on - strand, within EX31_RS03055 at 93.401 kb on - strand, within EX31_RS03055 at 93.401 kb on - strand, within EX31_RS03055 at 93.401 kb on - strand, within EX31_RS03055 at 93.401 kb on - strand, within EX31_RS03055 at 93.402 kb on + strand, within EX31_RS03055 at 93.402 kb on + strand, within EX31_RS03055 at 93.431 kb on + strand at 93.431 kb on + strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.433 kb on + strand at 93.433 kb on + strand at 93.433 kb on + strand at 93.434 kb on - strand at 93.434 kb on - strand at 93.434 kb on - strand at 93.441 kb on + strand at 93.441 kb on + strand at 93.441 kb on + strand at 93.441 kb on + strand at 93.442 kb on - strand at 93.442 kb on - strand at 93.442 kb on - strand at 93.442 kb on - strand at 93.442 kb on - strand at 93.549 kb on + strand at 93.549 kb on + strand at 93.549 kb on + strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.550 kb on - strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.551 kb on + strand at 93.552 kb on - strand at 93.552 kb on - strand at 93.588 kb on + strand at 93.589 kb on - strand at 93.589 kb on - strand at 93.589 kb on - strand at 93.589 kb on - strand at 93.589 kb on - strand at 93.636 kb on + strand at 93.636 kb on + strand at 93.659 kb on + strand at 93.660 kb on - strand at 93.664 kb on + strand at 93.665 kb on - strand at 93.665 kb on - strand at 93.665 kb on - strand at 93.771 kb on + strand, within EX31_RS03060 at 93.772 kb on - strand, within EX31_RS03060 at 93.773 kb on + strand, within EX31_RS03060 at 93.774 kb on - strand, within EX31_RS03060 at 93.774 kb on - strand, within EX31_RS03060 at 93.828 kb on + strand, within EX31_RS03060 at 93.828 kb on + strand, within EX31_RS03060 at 93.888 kb on + strand, within EX31_RS03060 at 93.889 kb on - strand, within EX31_RS03060 at 93.953 kb on + strand, within EX31_RS03060 at 93.954 kb on - strand, within EX31_RS03060 at 94.004 kb on + strand, within EX31_RS03060 at 94.023 kb on - strand, within EX31_RS03060 at 94.087 kb on + strand, within EX31_RS03060 at 94.178 kb on + strand, within EX31_RS03060 at 94.179 kb on - strand, within EX31_RS03060 at 94.182 kb on + strand, within EX31_RS03060 at 94.182 kb on + strand, within EX31_RS03060 at 94.182 kb on + strand, within EX31_RS03060 at 94.182 kb on + strand, within EX31_RS03060 at 94.183 kb on - strand, within EX31_RS03060 at 94.183 kb on - strand, within EX31_RS03060 at 94.228 kb on + strand, within EX31_RS03060 at 94.302 kb on + strand, within EX31_RS03060 at 94.303 kb on - strand, within EX31_RS03060 at 94.303 kb on - strand, within EX31_RS03060 at 94.303 kb on - strand, within EX31_RS03060 at 94.303 kb on - strand, within EX31_RS03060 at 94.316 kb on + strand, within EX31_RS03060 at 94.316 kb on + strand, within EX31_RS03060 at 94.316 kb on + strand, within EX31_RS03060 at 94.316 kb on + strand, within EX31_RS03060 at 94.317 kb on - strand, within EX31_RS03060 at 94.317 kb on - strand, within EX31_RS03060 at 94.317 kb on - strand, within EX31_RS03060 at 94.412 kb on - strand, within EX31_RS03060 at 94.618 kb on + strand at 94.618 kb on + strand at 94.619 kb on - strand at 94.728 kb on + strand at 94.728 kb on + strand at 94.780 kb on + strand at 94.780 kb on + strand at 94.780 kb on + strand at 94.780 kb on + strand at 94.781 kb on - strand at 94.787 kb on + strand at 94.787 kb on + strand at 94.787 kb on + strand at 94.787 kb on + strand at 94.787 kb on + strand at 94.788 kb on - strand at 94.788 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.792 kb on - strand at 94.868 kb on + strand at 94.869 kb on - strand at 94.869 kb on - strand at 94.880 kb on + strand at 94.880 kb on + strand at 94.880 kb on + strand at 94.881 kb on - strand at 94.881 kb on - strand at 94.881 kb on - strand at 94.881 kb on - strand at 94.887 kb on + strand at 94.919 kb on + strand at 94.919 kb on + strand at 94.919 kb on + strand at 94.920 kb on - strand at 94.920 kb on - strand at 94.920 kb on - strand at 94.920 kb on - strand at 94.984 kb on + strand, within EX31_RS03065 at 94.984 kb on + strand, within EX31_RS03065 at 94.984 kb on + strand, within EX31_RS03065 at 94.985 kb on - strand, within EX31_RS03065 at 95.009 kb on + strand, within EX31_RS03065 at 95.009 kb on + strand, within EX31_RS03065 at 95.009 kb on + strand, within EX31_RS03065 at 95.010 kb on - strand, within EX31_RS03065 at 95.010 kb on - strand, within EX31_RS03065 at 95.010 kb on - strand, within EX31_RS03065 at 95.052 kb on + strand, within EX31_RS03065 at 95.070 kb on + strand, within EX31_RS03065 at 95.071 kb on - strand, within EX31_RS03065 at 95.153 kb on + strand, within EX31_RS03065 at 95.153 kb on + strand, within EX31_RS03065 at 95.153 kb on + strand, within EX31_RS03065 at 95.153 kb on + strand, within EX31_RS03065 at 95.154 kb on - strand, within EX31_RS03065 at 95.154 kb on - strand, within EX31_RS03065 at 95.154 kb on - strand, within EX31_RS03065 at 95.154 kb on - strand, within EX31_RS03065 at 95.397 kb on - strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.453 kb on + strand, within EX31_RS03065 at 95.454 kb on - strand, within EX31_RS03065 at 95.454 kb on - strand, within EX31_RS03065 at 95.454 kb on - strand, within EX31_RS03065 at 95.612 kb on + strand, within EX31_RS03065 at 95.612 kb on + strand, within EX31_RS03065 at 95.622 kb on + strand, within EX31_RS03065 at 95.622 kb on + strand, within EX31_RS03065 at 95.688 kb on + strand, within EX31_RS03065 at 95.688 kb on + strand, within EX31_RS03065 at 95.688 kb on + strand, within EX31_RS03065 at 95.688 kb on + strand, within EX31_RS03065 at 95.688 kb on + strand, within EX31_RS03065
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 92,665 + -0.8 92,665 + +0.2 92,665 + +0.1 92,666 - -1.6 92,666 - -1.6 92,666 - +0.6 92,668 + +0.3 92,668 + +0.8 92,685 - -0.5 92,685 - +1.6 92,892 + EX31_RS03055 0.25 -0.6 92,892 + EX31_RS03055 0.25 +0.9 92,916 + EX31_RS03055 0.28 -0.5 92,916 + EX31_RS03055 0.28 +0.5 92,916 + EX31_RS03055 0.28 +0.2 92,917 - EX31_RS03055 0.28 +1.1 92,917 - EX31_RS03055 0.28 -1.1 93,019 + EX31_RS03055 0.40 +0.1 93,019 + EX31_RS03055 0.40 -0.5 93,020 - EX31_RS03055 0.40 -0.5 93,066 + EX31_RS03055 0.46 +1.1 93,066 + EX31_RS03055 0.46 -0.8 93,066 + EX31_RS03055 0.46 -0.8 93,067 - EX31_RS03055 0.46 +0.1 93,070 + EX31_RS03055 0.47 -0.3 93,070 + EX31_RS03055 0.47 +0.1 93,070 + EX31_RS03055 0.47 +0.8 93,070 + EX31_RS03055 0.47 -2.3 93,071 - EX31_RS03055 0.47 +1.1 93,071 - EX31_RS03055 0.47 -1.5 93,306 + EX31_RS03055 0.75 -0.2 93,306 + EX31_RS03055 0.75 -0.8 93,307 - EX31_RS03055 0.75 +0.2 93,307 - EX31_RS03055 0.75 -0.3 93,307 - EX31_RS03055 0.75 -1.5 93,307 - EX31_RS03055 0.75 +0.1 93,394 + EX31_RS03055 0.86 +0.2 93,394 + EX31_RS03055 0.86 +0.7 93,394 + EX31_RS03055 0.86 -0.1 93,394 + EX31_RS03055 0.86 +0.4 93,394 + EX31_RS03055 0.86 -0.8 93,395 - EX31_RS03055 0.86 -1.9 93,395 - EX31_RS03055 0.86 -1.0 93,395 - EX31_RS03055 0.86 +0.5 93,395 - EX31_RS03055 0.86 -2.4 93,400 + EX31_RS03055 0.87 +0.8 93,400 + EX31_RS03055 0.87 -0.1 93,400 + EX31_RS03055 0.87 +0.6 93,400 + EX31_RS03055 0.87 +0.6 93,400 + EX31_RS03055 0.87 -0.8 93,401 - EX31_RS03055 0.87 -0.0 93,401 - EX31_RS03055 0.87 +0.2 93,401 - EX31_RS03055 0.87 +1.2 93,401 - EX31_RS03055 0.87 +0.1 93,401 - EX31_RS03055 0.87 +0.2 93,402 + EX31_RS03055 0.87 +1.9 93,402 + EX31_RS03055 0.87 -0.3 93,431 + +0.4 93,431 + +0.4 93,432 - -0.5 93,432 - -1.9 93,432 - -1.5 93,432 - +0.1 93,432 - +1.1 93,433 + +1.5 93,433 + +0.3 93,433 + +0.3 93,434 - -0.9 93,434 - +0.6 93,434 - +0.3 93,441 + -0.6 93,441 + -1.6 93,441 + +0.1 93,441 + +0.2 93,442 - +0.8 93,442 - -0.3 93,442 - +0.3 93,442 - -0.5 93,442 - -0.8 93,549 + -0.3 93,549 + -0.1 93,549 + -2.3 93,550 - -0.7 93,550 - +0.9 93,550 - +0.1 93,550 - +1.1 93,550 - -1.1 93,550 - -0.1 93,550 - +0.6 93,550 - -0.1 93,551 + +0.1 93,551 + +1.8 93,551 + +0.1 93,551 + +1.0 93,551 + +0.3 93,551 + -0.1 93,551 + -0.5 93,552 - +1.1 93,552 - +1.1 93,588 + +1.2 93,589 - +0.2 93,589 - +0.6 93,589 - -0.9 93,589 - +1.1 93,589 - +0.2 93,636 + -1.4 93,636 + -0.2 93,659 + -0.7 93,660 - -0.4 93,664 + +0.2 93,665 - +2.3 93,665 - +0.4 93,665 - +0.5 93,771 + EX31_RS03060 0.19 +0.3 93,772 - EX31_RS03060 0.19 +1.9 93,773 + EX31_RS03060 0.19 -0.5 93,774 - EX31_RS03060 0.19 +0.7 93,774 - EX31_RS03060 0.19 +0.2 93,828 + EX31_RS03060 0.24 +0.5 93,828 + EX31_RS03060 0.24 -0.8 93,888 + EX31_RS03060 0.29 -0.4 93,889 - EX31_RS03060 0.29 -0.9 93,953 + EX31_RS03060 0.35 +0.6 93,954 - EX31_RS03060 0.35 +0.5 94,004 + EX31_RS03060 0.39 +1.1 94,023 - EX31_RS03060 0.41 +0.1 94,087 + EX31_RS03060 0.47 +0.9 94,178 + EX31_RS03060 0.55 -1.5 94,179 - EX31_RS03060 0.55 +0.5 94,182 + EX31_RS03060 0.55 -0.2 94,182 + EX31_RS03060 0.55 -1.0 94,182 + EX31_RS03060 0.55 -0.3 94,182 + EX31_RS03060 0.55 -0.3 94,183 - EX31_RS03060 0.55 -0.1 94,183 - EX31_RS03060 0.55 -0.5 94,228 + EX31_RS03060 0.59 -0.1 94,302 + EX31_RS03060 0.66 -0.1 94,303 - EX31_RS03060 0.66 +2.5 94,303 - EX31_RS03060 0.66 -0.8 94,303 - EX31_RS03060 0.66 +0.2 94,303 - EX31_RS03060 0.66 -2.1 94,316 + EX31_RS03060 0.67 +0.2 94,316 + EX31_RS03060 0.67 -0.8 94,316 + EX31_RS03060 0.67 -0.7 94,316 + EX31_RS03060 0.67 -0.2 94,317 - EX31_RS03060 0.67 -1.8 94,317 - EX31_RS03060 0.67 +0.1 94,317 - EX31_RS03060 0.67 +2.1 94,412 - EX31_RS03060 0.75 +0.3 94,618 + +0.1 94,618 + -0.1 94,619 - -0.4 94,728 + -0.7 94,728 + -0.9 94,780 + +0.5 94,780 + +1.1 94,780 + -0.4 94,780 + +1.4 94,781 - +1.8 94,787 + -0.5 94,787 + +0.1 94,787 + -0.1 94,787 + +0.1 94,787 + -0.7 94,788 - +0.1 94,788 - -0.4 94,792 - +1.8 94,792 - +0.2 94,792 - -0.2 94,792 - +1.2 94,792 - -0.2 94,792 - +1.6 94,792 - +1.5 94,868 + -1.1 94,869 - -1.5 94,869 - +1.6 94,880 + +1.4 94,880 + +0.3 94,880 + +1.1 94,881 - -1.1 94,881 - -0.7 94,881 - -0.3 94,881 - +0.3 94,887 + +0.6 94,919 + -1.1 94,919 + +0.6 94,919 + +0.1 94,920 - -0.4 94,920 - +0.9 94,920 - +0.2 94,920 - +0.1 94,984 + EX31_RS03065 0.11 +0.4 94,984 + EX31_RS03065 0.11 -1.5 94,984 + EX31_RS03065 0.11 -3.1 94,985 - EX31_RS03065 0.11 +0.2 95,009 + EX31_RS03065 0.12 +0.7 95,009 + EX31_RS03065 0.12 +0.3 95,009 + EX31_RS03065 0.12 +0.4 95,010 - EX31_RS03065 0.13 +1.1 95,010 - EX31_RS03065 0.13 +0.1 95,010 - EX31_RS03065 0.13 +1.2 95,052 + EX31_RS03065 0.15 +1.1 95,070 + EX31_RS03065 0.16 +0.9 95,071 - EX31_RS03065 0.16 -0.2 95,153 + EX31_RS03065 0.21 +0.9 95,153 + EX31_RS03065 0.21 +0.1 95,153 + EX31_RS03065 0.21 +1.1 95,153 + EX31_RS03065 0.21 +0.0 95,154 - EX31_RS03065 0.21 +0.3 95,154 - EX31_RS03065 0.21 +0.5 95,154 - EX31_RS03065 0.21 +1.9 95,154 - EX31_RS03065 0.21 -0.8 95,397 - EX31_RS03065 0.34 -0.1 95,453 + EX31_RS03065 0.37 +0.6 95,453 + EX31_RS03065 0.37 +0.1 95,453 + EX31_RS03065 0.37 +0.9 95,453 + EX31_RS03065 0.37 -2.3 95,453 + EX31_RS03065 0.37 +0.1 95,453 + EX31_RS03065 0.37 +0.6 95,453 + EX31_RS03065 0.37 -0.8 95,453 + EX31_RS03065 0.37 -0.7 95,454 - EX31_RS03065 0.37 +0.4 95,454 - EX31_RS03065 0.37 -0.3 95,454 - EX31_RS03065 0.37 +0.4 95,612 + EX31_RS03065 0.46 +1.1 95,612 + EX31_RS03065 0.46 -0.6 95,622 + EX31_RS03065 0.47 +0.5 95,622 + EX31_RS03065 0.47 +0.6 95,688 + EX31_RS03065 0.51 -0.3 95,688 + EX31_RS03065 0.51 +1.1 95,688 + EX31_RS03065 0.51 -0.9 95,688 + EX31_RS03065 0.51 -0.5 95,688 + EX31_RS03065 0.51 +0.1
Or see this region's nucleotide sequence