Strain Fitness in Rahnella sp. WP5 around EX31_RS03060

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03050 and EX31_RS03055 overlap by 1 nucleotidesEX31_RS03055 and EX31_RS03060 are separated by 44 nucleotidesEX31_RS03060 and EX31_RS03065 are separated by 94 nucleotides EX31_RS03050: EX31_RS03050 - transporter substrate-binding domain-containing protein, at 91,868 to 92,686 _RS03050 EX31_RS03055: EX31_RS03055 - amino acid ABC transporter permease, at 92,686 to 93,510 _RS03055 EX31_RS03060: EX31_RS03060 - pyridoxal phosphate-dependent aminotransferase, at 93,555 to 94,691 _RS03060 EX31_RS03065: EX31_RS03065 - chitinase, at 94,786 to 96,570 _RS03065 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 92.665 kb on + strandat 92.665 kb on + strandat 92.665 kb on + strandat 92.666 kb on - strandat 92.666 kb on - strandat 92.666 kb on - strandat 92.668 kb on + strandat 92.668 kb on + strandat 92.685 kb on - strandat 92.685 kb on - strandat 92.892 kb on + strand, within EX31_RS03055at 92.892 kb on + strand, within EX31_RS03055at 92.916 kb on + strand, within EX31_RS03055at 92.916 kb on + strand, within EX31_RS03055at 92.916 kb on + strand, within EX31_RS03055at 92.917 kb on - strand, within EX31_RS03055at 92.917 kb on - strand, within EX31_RS03055at 93.019 kb on + strand, within EX31_RS03055at 93.019 kb on + strand, within EX31_RS03055at 93.020 kb on - strand, within EX31_RS03055at 93.066 kb on + strand, within EX31_RS03055at 93.066 kb on + strand, within EX31_RS03055at 93.066 kb on + strand, within EX31_RS03055at 93.067 kb on - strand, within EX31_RS03055at 93.070 kb on + strand, within EX31_RS03055at 93.070 kb on + strand, within EX31_RS03055at 93.070 kb on + strand, within EX31_RS03055at 93.070 kb on + strand, within EX31_RS03055at 93.071 kb on - strand, within EX31_RS03055at 93.071 kb on - strand, within EX31_RS03055at 93.306 kb on + strand, within EX31_RS03055at 93.306 kb on + strand, within EX31_RS03055at 93.307 kb on - strand, within EX31_RS03055at 93.307 kb on - strand, within EX31_RS03055at 93.307 kb on - strand, within EX31_RS03055at 93.307 kb on - strand, within EX31_RS03055at 93.394 kb on + strand, within EX31_RS03055at 93.394 kb on + strand, within EX31_RS03055at 93.394 kb on + strand, within EX31_RS03055at 93.394 kb on + strand, within EX31_RS03055at 93.394 kb on + strand, within EX31_RS03055at 93.395 kb on - strand, within EX31_RS03055at 93.395 kb on - strand, within EX31_RS03055at 93.395 kb on - strand, within EX31_RS03055at 93.395 kb on - strand, within EX31_RS03055at 93.400 kb on + strand, within EX31_RS03055at 93.400 kb on + strand, within EX31_RS03055at 93.400 kb on + strand, within EX31_RS03055at 93.400 kb on + strand, within EX31_RS03055at 93.400 kb on + strand, within EX31_RS03055at 93.401 kb on - strand, within EX31_RS03055at 93.401 kb on - strand, within EX31_RS03055at 93.401 kb on - strand, within EX31_RS03055at 93.401 kb on - strand, within EX31_RS03055at 93.401 kb on - strand, within EX31_RS03055at 93.402 kb on + strand, within EX31_RS03055at 93.402 kb on + strand, within EX31_RS03055at 93.431 kb on + strandat 93.431 kb on + strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.432 kb on - strandat 93.433 kb on + strandat 93.433 kb on + strandat 93.433 kb on + strandat 93.434 kb on - strandat 93.434 kb on - strandat 93.434 kb on - strandat 93.441 kb on + strandat 93.441 kb on + strandat 93.441 kb on + strandat 93.441 kb on + strandat 93.442 kb on - strandat 93.442 kb on - strandat 93.442 kb on - strandat 93.442 kb on - strandat 93.442 kb on - strandat 93.549 kb on + strandat 93.549 kb on + strandat 93.549 kb on + strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.550 kb on - strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.551 kb on + strandat 93.552 kb on - strandat 93.552 kb on - strandat 93.588 kb on + strandat 93.589 kb on - strandat 93.589 kb on - strandat 93.589 kb on - strandat 93.589 kb on - strandat 93.589 kb on - strandat 93.636 kb on + strandat 93.636 kb on + strandat 93.659 kb on + strandat 93.660 kb on - strandat 93.664 kb on + strandat 93.665 kb on - strandat 93.665 kb on - strandat 93.665 kb on - strandat 93.771 kb on + strand, within EX31_RS03060at 93.772 kb on - strand, within EX31_RS03060at 93.773 kb on + strand, within EX31_RS03060at 93.774 kb on - strand, within EX31_RS03060at 93.774 kb on - strand, within EX31_RS03060at 93.828 kb on + strand, within EX31_RS03060at 93.828 kb on + strand, within EX31_RS03060at 93.888 kb on + strand, within EX31_RS03060at 93.889 kb on - strand, within EX31_RS03060at 93.953 kb on + strand, within EX31_RS03060at 93.954 kb on - strand, within EX31_RS03060at 94.004 kb on + strand, within EX31_RS03060at 94.023 kb on - strand, within EX31_RS03060at 94.087 kb on + strand, within EX31_RS03060at 94.178 kb on + strand, within EX31_RS03060at 94.179 kb on - strand, within EX31_RS03060at 94.182 kb on + strand, within EX31_RS03060at 94.182 kb on + strand, within EX31_RS03060at 94.182 kb on + strand, within EX31_RS03060at 94.182 kb on + strand, within EX31_RS03060at 94.183 kb on - strand, within EX31_RS03060at 94.183 kb on - strand, within EX31_RS03060at 94.228 kb on + strand, within EX31_RS03060at 94.302 kb on + strand, within EX31_RS03060at 94.303 kb on - strand, within EX31_RS03060at 94.303 kb on - strand, within EX31_RS03060at 94.303 kb on - strand, within EX31_RS03060at 94.303 kb on - strand, within EX31_RS03060at 94.316 kb on + strand, within EX31_RS03060at 94.316 kb on + strand, within EX31_RS03060at 94.316 kb on + strand, within EX31_RS03060at 94.316 kb on + strand, within EX31_RS03060at 94.317 kb on - strand, within EX31_RS03060at 94.317 kb on - strand, within EX31_RS03060at 94.317 kb on - strand, within EX31_RS03060at 94.412 kb on - strand, within EX31_RS03060at 94.618 kb on + strandat 94.618 kb on + strandat 94.619 kb on - strandat 94.728 kb on + strandat 94.728 kb on + strandat 94.780 kb on + strandat 94.780 kb on + strandat 94.780 kb on + strandat 94.780 kb on + strandat 94.781 kb on - strandat 94.787 kb on + strandat 94.787 kb on + strandat 94.787 kb on + strandat 94.787 kb on + strandat 94.787 kb on + strandat 94.788 kb on - strandat 94.788 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.792 kb on - strandat 94.868 kb on + strandat 94.869 kb on - strandat 94.869 kb on - strandat 94.880 kb on + strandat 94.880 kb on + strandat 94.880 kb on + strandat 94.881 kb on - strandat 94.881 kb on - strandat 94.881 kb on - strandat 94.881 kb on - strandat 94.887 kb on + strandat 94.919 kb on + strandat 94.919 kb on + strandat 94.919 kb on + strandat 94.920 kb on - strandat 94.920 kb on - strandat 94.920 kb on - strandat 94.920 kb on - strandat 94.984 kb on + strand, within EX31_RS03065at 94.984 kb on + strand, within EX31_RS03065at 94.984 kb on + strand, within EX31_RS03065at 94.985 kb on - strand, within EX31_RS03065at 95.009 kb on + strand, within EX31_RS03065at 95.009 kb on + strand, within EX31_RS03065at 95.009 kb on + strand, within EX31_RS03065at 95.010 kb on - strand, within EX31_RS03065at 95.010 kb on - strand, within EX31_RS03065at 95.010 kb on - strand, within EX31_RS03065at 95.052 kb on + strand, within EX31_RS03065at 95.070 kb on + strand, within EX31_RS03065at 95.071 kb on - strand, within EX31_RS03065at 95.153 kb on + strand, within EX31_RS03065at 95.153 kb on + strand, within EX31_RS03065at 95.153 kb on + strand, within EX31_RS03065at 95.153 kb on + strand, within EX31_RS03065at 95.154 kb on - strand, within EX31_RS03065at 95.154 kb on - strand, within EX31_RS03065at 95.154 kb on - strand, within EX31_RS03065at 95.154 kb on - strand, within EX31_RS03065at 95.397 kb on - strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.453 kb on + strand, within EX31_RS03065at 95.454 kb on - strand, within EX31_RS03065at 95.454 kb on - strand, within EX31_RS03065at 95.454 kb on - strand, within EX31_RS03065at 95.612 kb on + strand, within EX31_RS03065at 95.612 kb on + strand, within EX31_RS03065at 95.622 kb on + strand, within EX31_RS03065at 95.622 kb on + strand, within EX31_RS03065at 95.688 kb on + strand, within EX31_RS03065at 95.688 kb on + strand, within EX31_RS03065at 95.688 kb on + strand, within EX31_RS03065at 95.688 kb on + strand, within EX31_RS03065at 95.688 kb on + strand, within EX31_RS03065

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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92,665 + -0.8
92,665 + +0.2
92,665 + +0.1
92,666 - -1.6
92,666 - -1.6
92,666 - +0.6
92,668 + +0.3
92,668 + +0.8
92,685 - -0.5
92,685 - +1.6
92,892 + EX31_RS03055 0.25 -0.6
92,892 + EX31_RS03055 0.25 +0.9
92,916 + EX31_RS03055 0.28 -0.5
92,916 + EX31_RS03055 0.28 +0.5
92,916 + EX31_RS03055 0.28 +0.2
92,917 - EX31_RS03055 0.28 +1.1
92,917 - EX31_RS03055 0.28 -1.1
93,019 + EX31_RS03055 0.40 +0.1
93,019 + EX31_RS03055 0.40 -0.5
93,020 - EX31_RS03055 0.40 -0.5
93,066 + EX31_RS03055 0.46 +1.1
93,066 + EX31_RS03055 0.46 -0.8
93,066 + EX31_RS03055 0.46 -0.8
93,067 - EX31_RS03055 0.46 +0.1
93,070 + EX31_RS03055 0.47 -0.3
93,070 + EX31_RS03055 0.47 +0.1
93,070 + EX31_RS03055 0.47 +0.8
93,070 + EX31_RS03055 0.47 -2.3
93,071 - EX31_RS03055 0.47 +1.1
93,071 - EX31_RS03055 0.47 -1.5
93,306 + EX31_RS03055 0.75 -0.2
93,306 + EX31_RS03055 0.75 -0.8
93,307 - EX31_RS03055 0.75 +0.2
93,307 - EX31_RS03055 0.75 -0.3
93,307 - EX31_RS03055 0.75 -1.5
93,307 - EX31_RS03055 0.75 +0.1
93,394 + EX31_RS03055 0.86 +0.2
93,394 + EX31_RS03055 0.86 +0.7
93,394 + EX31_RS03055 0.86 -0.1
93,394 + EX31_RS03055 0.86 +0.4
93,394 + EX31_RS03055 0.86 -0.8
93,395 - EX31_RS03055 0.86 -1.9
93,395 - EX31_RS03055 0.86 -1.0
93,395 - EX31_RS03055 0.86 +0.5
93,395 - EX31_RS03055 0.86 -2.4
93,400 + EX31_RS03055 0.87 +0.8
93,400 + EX31_RS03055 0.87 -0.1
93,400 + EX31_RS03055 0.87 +0.6
93,400 + EX31_RS03055 0.87 +0.6
93,400 + EX31_RS03055 0.87 -0.8
93,401 - EX31_RS03055 0.87 -0.0
93,401 - EX31_RS03055 0.87 +0.2
93,401 - EX31_RS03055 0.87 +1.2
93,401 - EX31_RS03055 0.87 +0.1
93,401 - EX31_RS03055 0.87 +0.2
93,402 + EX31_RS03055 0.87 +1.9
93,402 + EX31_RS03055 0.87 -0.3
93,431 + +0.4
93,431 + +0.4
93,432 - -0.5
93,432 - -1.9
93,432 - -1.5
93,432 - +0.1
93,432 - +1.1
93,433 + +1.5
93,433 + +0.3
93,433 + +0.3
93,434 - -0.9
93,434 - +0.6
93,434 - +0.3
93,441 + -0.6
93,441 + -1.6
93,441 + +0.1
93,441 + +0.2
93,442 - +0.8
93,442 - -0.3
93,442 - +0.3
93,442 - -0.5
93,442 - -0.8
93,549 + -0.3
93,549 + -0.1
93,549 + -2.3
93,550 - -0.7
93,550 - +0.9
93,550 - +0.1
93,550 - +1.1
93,550 - -1.1
93,550 - -0.1
93,550 - +0.6
93,550 - -0.1
93,551 + +0.1
93,551 + +1.8
93,551 + +0.1
93,551 + +1.0
93,551 + +0.3
93,551 + -0.1
93,551 + -0.5
93,552 - +1.1
93,552 - +1.1
93,588 + +1.2
93,589 - +0.2
93,589 - +0.6
93,589 - -0.9
93,589 - +1.1
93,589 - +0.2
93,636 + -1.4
93,636 + -0.2
93,659 + -0.7
93,660 - -0.4
93,664 + +0.2
93,665 - +2.3
93,665 - +0.4
93,665 - +0.5
93,771 + EX31_RS03060 0.19 +0.3
93,772 - EX31_RS03060 0.19 +1.9
93,773 + EX31_RS03060 0.19 -0.5
93,774 - EX31_RS03060 0.19 +0.7
93,774 - EX31_RS03060 0.19 +0.2
93,828 + EX31_RS03060 0.24 +0.5
93,828 + EX31_RS03060 0.24 -0.8
93,888 + EX31_RS03060 0.29 -0.4
93,889 - EX31_RS03060 0.29 -0.9
93,953 + EX31_RS03060 0.35 +0.6
93,954 - EX31_RS03060 0.35 +0.5
94,004 + EX31_RS03060 0.39 +1.1
94,023 - EX31_RS03060 0.41 +0.1
94,087 + EX31_RS03060 0.47 +0.9
94,178 + EX31_RS03060 0.55 -1.5
94,179 - EX31_RS03060 0.55 +0.5
94,182 + EX31_RS03060 0.55 -0.2
94,182 + EX31_RS03060 0.55 -1.0
94,182 + EX31_RS03060 0.55 -0.3
94,182 + EX31_RS03060 0.55 -0.3
94,183 - EX31_RS03060 0.55 -0.1
94,183 - EX31_RS03060 0.55 -0.5
94,228 + EX31_RS03060 0.59 -0.1
94,302 + EX31_RS03060 0.66 -0.1
94,303 - EX31_RS03060 0.66 +2.5
94,303 - EX31_RS03060 0.66 -0.8
94,303 - EX31_RS03060 0.66 +0.2
94,303 - EX31_RS03060 0.66 -2.1
94,316 + EX31_RS03060 0.67 +0.2
94,316 + EX31_RS03060 0.67 -0.8
94,316 + EX31_RS03060 0.67 -0.7
94,316 + EX31_RS03060 0.67 -0.2
94,317 - EX31_RS03060 0.67 -1.8
94,317 - EX31_RS03060 0.67 +0.1
94,317 - EX31_RS03060 0.67 +2.1
94,412 - EX31_RS03060 0.75 +0.3
94,618 + +0.1
94,618 + -0.1
94,619 - -0.4
94,728 + -0.7
94,728 + -0.9
94,780 + +0.5
94,780 + +1.1
94,780 + -0.4
94,780 + +1.4
94,781 - +1.8
94,787 + -0.5
94,787 + +0.1
94,787 + -0.1
94,787 + +0.1
94,787 + -0.7
94,788 - +0.1
94,788 - -0.4
94,792 - +1.8
94,792 - +0.2
94,792 - -0.2
94,792 - +1.2
94,792 - -0.2
94,792 - +1.6
94,792 - +1.5
94,868 + -1.1
94,869 - -1.5
94,869 - +1.6
94,880 + +1.4
94,880 + +0.3
94,880 + +1.1
94,881 - -1.1
94,881 - -0.7
94,881 - -0.3
94,881 - +0.3
94,887 + +0.6
94,919 + -1.1
94,919 + +0.6
94,919 + +0.1
94,920 - -0.4
94,920 - +0.9
94,920 - +0.2
94,920 - +0.1
94,984 + EX31_RS03065 0.11 +0.4
94,984 + EX31_RS03065 0.11 -1.5
94,984 + EX31_RS03065 0.11 -3.1
94,985 - EX31_RS03065 0.11 +0.2
95,009 + EX31_RS03065 0.12 +0.7
95,009 + EX31_RS03065 0.12 +0.3
95,009 + EX31_RS03065 0.12 +0.4
95,010 - EX31_RS03065 0.13 +1.1
95,010 - EX31_RS03065 0.13 +0.1
95,010 - EX31_RS03065 0.13 +1.2
95,052 + EX31_RS03065 0.15 +1.1
95,070 + EX31_RS03065 0.16 +0.9
95,071 - EX31_RS03065 0.16 -0.2
95,153 + EX31_RS03065 0.21 +0.9
95,153 + EX31_RS03065 0.21 +0.1
95,153 + EX31_RS03065 0.21 +1.1
95,153 + EX31_RS03065 0.21 +0.0
95,154 - EX31_RS03065 0.21 +0.3
95,154 - EX31_RS03065 0.21 +0.5
95,154 - EX31_RS03065 0.21 +1.9
95,154 - EX31_RS03065 0.21 -0.8
95,397 - EX31_RS03065 0.34 -0.1
95,453 + EX31_RS03065 0.37 +0.6
95,453 + EX31_RS03065 0.37 +0.1
95,453 + EX31_RS03065 0.37 +0.9
95,453 + EX31_RS03065 0.37 -2.3
95,453 + EX31_RS03065 0.37 +0.1
95,453 + EX31_RS03065 0.37 +0.6
95,453 + EX31_RS03065 0.37 -0.8
95,453 + EX31_RS03065 0.37 -0.7
95,454 - EX31_RS03065 0.37 +0.4
95,454 - EX31_RS03065 0.37 -0.3
95,454 - EX31_RS03065 0.37 +0.4
95,612 + EX31_RS03065 0.46 +1.1
95,612 + EX31_RS03065 0.46 -0.6
95,622 + EX31_RS03065 0.47 +0.5
95,622 + EX31_RS03065 0.47 +0.6
95,688 + EX31_RS03065 0.51 -0.3
95,688 + EX31_RS03065 0.51 +1.1
95,688 + EX31_RS03065 0.51 -0.9
95,688 + EX31_RS03065 0.51 -0.5
95,688 + EX31_RS03065 0.51 +0.1

Or see this region's nucleotide sequence