Strain Fitness in Rahnella sp. WP5

Strain Fitness in Rahnella sp. WP5 around EX31_RS03030

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D,L-Lactate (C)
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87,247	+	EX31_RS03025	0.76	+0.6
87,247	+	EX31_RS03025	0.76	-0.7
87,247	+	EX31_RS03025	0.76	+1.5
87,248	-	EX31_RS03025	0.76	+0.4
87,251	+	EX31_RS03025	0.77	+1.1
87,251	+	EX31_RS03025	0.77	+0.1
87,251	+	EX31_RS03025	0.77	+1.1
87,251	+	EX31_RS03025	0.77	+0.3
87,252	-	EX31_RS03025	0.77	+0.7
87,252	-	EX31_RS03025	0.77	-0.5
87,280	-	EX31_RS03025	0.79	+0.2
87,280	-	EX31_RS03025	0.79	-1.3
87,314	+	EX31_RS03025	0.81	+0.1
87,314	+	EX31_RS03025	0.81	-1.3
87,315	-	EX31_RS03025	0.81	-0.7
87,315	-	EX31_RS03025	0.81	+0.6
87,315	-	EX31_RS03025	0.81	-0.1
87,318	+	EX31_RS03025	0.81	+0.1
87,318	+	EX31_RS03025	0.81	-0.4
87,318	+	EX31_RS03025	0.81	+1.7
87,319	-	EX31_RS03025	0.81	-1.5
87,320	+	EX31_RS03025	0.82	+0.8
87,320	+	EX31_RS03025	0.82	+0.9
87,321	-	EX31_RS03025	0.82	-1.5
87,321	-	EX31_RS03025	0.82	+0.7
87,404	+	EX31_RS03025	0.88	+0.7
87,404	+	EX31_RS03025	0.88	-2.3
87,404	+	EX31_RS03025	0.88	-1.3
87,404	+	EX31_RS03025	0.88	-0.3
87,404	+	EX31_RS03025	0.88	+0.9
87,405	-	EX31_RS03025	0.88	-1.3
87,405	-	EX31_RS03025	0.88	-2.5
87,453	+			-0.3
87,454	-			-0.1
87,454	-			+0.1
87,454	-			+0.2
87,477	+			+1.5
87,478	-			-0.2
87,478	-			-0.7
87,479	+			+2.1
87,479	+			+0.2
87,479	+			+0.6
87,479	+			+1.1
87,480	-			+0.7
87,480	-			-0.2
87,480	-			+0.4
87,490	+			+1.1
87,491	-			-1.8
87,491	-			-0.1
87,523	-			-1.3
87,526	+			+1.1
87,527	-			-0.6
87,603	+			-1.3
87,603	+			+0.6
87,603	+			+0.5
87,604	-			+0.9
87,604	-			-0.4
87,605	+			+0.1
87,605	+			+0.3
87,605	+			-0.9
87,605	+			+1.1
87,605	+			-1.5
87,605	+			-1.3
87,605	+			+0.2
87,606	-			+1.4
87,606	-			+0.1
87,606	-			+0.2
87,606	-			+0.2
87,606	-			-0.4
87,606	-			+1.1
87,606	-			+1.4
87,606	-			+1.5
87,624	+			-0.6
87,624	+			-0.9
87,624	+			-0.7
87,625	-			+0.3
87,625	-			+0.3
87,625	-			+0.9
87,625	-			+1.6
87,625	-			+1.1
87,661	+			-0.6
87,661	+			+1.1
87,662	-			+0.4
87,662	-			+0.1
87,665	+			+0.3
87,665	+			-0.5
87,665	+			-1.0
87,666	-			+0.6
87,666	-			+0.5
87,666	-			+1.8
87,666	-			+1.7
87,666	-			+1.3
87,666	-			-0.2
87,666	-			+0.0
87,666	-			+0.3
87,670	-			+0.1
87,677	-			-0.5
87,695	+			+0.6
87,696	-			+0.4
87,696	-			-0.3
87,696	-			-0.3
87,711	+			-0.5
87,772	-			-0.5
87,772	-			-0.9
87,784	+			-0.2
87,784	+			+2.1
87,784	+			+0.5
87,784	+			-0.8
87,784	+			-0.0
87,785	-			-0.4
87,785	-			+0.1
87,785	-			-0.2
87,785	-			+0.5
87,785	-			+0.1
87,785	-			-0.5
87,797	+			-0.5
87,798	-			-0.3
87,809	-			+1.4
87,815	-			+0.7
87,815	-			+0.4
87,827	+			-0.3
87,827	+			+0.1
87,828	-			+0.1
87,828	-			-0.2
87,828	-			-1.4
87,828	-			-0.5
87,828	-			+0.3
87,828	-			+0.4
87,828	-			+1.1
87,828	-			-0.1
87,832	-			-0.1
87,832	-			+0.7
87,857	+			+2.2
87,857	+			-0.6
87,858	-			+1.2
87,858	-			-1.1
87,858	-			+0.3
87,905	+			+1.1
87,928	+			-0.0
87,944	+			+0.5
87,981	-			-0.8
87,983	+			-0.4
87,983	+			+0.8
87,984	-			+0.1
87,996	+			-0.4
87,996	+			-0.2
87,996	+			-0.1
87,996	+			-1.9
87,996	+			-0.5
87,996	+			+0.2
87,997	-			+0.7
87,997	-			-0.7
88,032	+			+0.1
88,111	-			-1.5
88,121	+			-0.4
88,123	+			+1.2
88,123	+			-1.0
88,123	+			+0.4
88,123	+			+0.1
88,123	+			+0.7
88,124	-			-2.4
88,138	+			-0.6
88,139	-			-0.6
88,139	-			-2.0
88,190	-			-2.5
88,190	-			-3.5
88,190	-			-0.3
88,210	+			-2.9
88,264	+	EX31_RS03030	0.11	-1.3
88,264	+	EX31_RS03030	0.11	-1.8
88,264	+	EX31_RS03030	0.11	-2.6
88,264	+	EX31_RS03030	0.11	-1.3
88,264	+	EX31_RS03030	0.11	-2.8
88,265	-	EX31_RS03030	0.11	-2.3
88,265	-	EX31_RS03030	0.11	-2.4
88,265	-	EX31_RS03030	0.11	-1.5
88,265	-	EX31_RS03030	0.11	-2.9
88,277	+	EX31_RS03030	0.12	-1.3
88,277	+	EX31_RS03030	0.12	-2.4
88,277	+	EX31_RS03030	0.12	-2.6
88,277	+	EX31_RS03030	0.12	-2.0
88,277	+	EX31_RS03030	0.12	-3.5
88,277	+	EX31_RS03030	0.12	-2.1
88,277	+	EX31_RS03030	0.12	-1.4
88,277	+	EX31_RS03030	0.12	+0.5
88,278	-	EX31_RS03030	0.12	-1.3
88,278	-	EX31_RS03030	0.12	-3.3
88,278	-	EX31_RS03030	0.12	-2.1
88,278	-	EX31_RS03030	0.12	+1.1
88,354	+	EX31_RS03030	0.22	-1.3
88,364	+	EX31_RS03030	0.23	+0.1
88,365	-	EX31_RS03030	0.23	-3.1
88,429	+	EX31_RS03030	0.31	-2.3
88,430	-	EX31_RS03030	0.31	-2.1
88,443	+	EX31_RS03030	0.33	-3.3
88,444	-	EX31_RS03030	0.33	-0.5
88,444	-	EX31_RS03030	0.33	-1.8
88,519	+	EX31_RS03030	0.42	-1.8
88,519	+	EX31_RS03030	0.42	-2.2
88,676	-	EX31_RS03030	0.62	-2.4
88,676	-	EX31_RS03030	0.62	-2.3
88,793	+	EX31_RS03030	0.76	-3.4
88,793	+	EX31_RS03030	0.76	-1.3
88,794	-	EX31_RS03030	0.76	-2.1
88,794	-	EX31_RS03030	0.76	-3.6
88,798	+	EX31_RS03030	0.77	-2.4
88,798	+	EX31_RS03030	0.77	-3.0
88,798	+	EX31_RS03030	0.77	-3.4
88,799	-	EX31_RS03030	0.77	-2.0
88,799	-	EX31_RS03030	0.77	-3.3
88,799	-	EX31_RS03030	0.77	-0.5
88,846	+	EX31_RS03030	0.83	-2.6
88,846	+	EX31_RS03030	0.83	-1.3
88,847	-	EX31_RS03030	0.83	-0.5
88,847	-	EX31_RS03030	0.83	-2.9
88,867	-	EX31_RS03030	0.85	-3.0
88,881	-	EX31_RS03030	0.87	-2.3
88,881	-	EX31_RS03030	0.87	+0.1
88,881	-	EX31_RS03030	0.87	-1.3
88,903	+	EX31_RS03030	0.90	-3.0
88,904	-			+1.1
88,904	-			-2.9
88,904	-			-1.9
88,904	-			+1.1
88,912	+			+1.1
88,940	+			-2.9
88,972	+			+0.5
88,972	+			-0.7
88,972	+			-0.2
88,972	+			-0.4
88,972	+			+0.1
88,972	+			+0.1
88,972	+			-0.8
88,972	+			+0.1
88,972	+			+0.8
88,972	+			+0.1
88,973	-			+1.1
88,973	-			+0.9
88,974	+			-0.9
88,974	+			-0.5
88,974	+			-3.6
88,974	+			-2.4
88,974	+			-1.3
88,975	-			-0.5
88,975	-			-1.9
88,975	-			-0.5
88,975	-			-1.3
89,011	+			-1.9
89,011	+			-3.9
89,011	+			-1.3
89,011	+			-0.9
89,011	+			-3.9
89,012	-			-3.2
89,012	-			-3.3
89,012	-			+0.1
89,012	-			-1.9
89,012	-			-2.8
89,012	-			-3.1
89,012	-			-2.1
89,023	+			-1.3
89,023	+			-1.4
89,024	-			-1.5
89,024	-			-2.8
89,024	-			-2.1
89,024	-			+2.1
89,024	-			-3.5
89,024	-			-2.4
89,050	+	EX31_RS03035	0.12	-2.9
89,050	+	EX31_RS03035	0.12	-3.8
89,050	+	EX31_RS03035	0.12	-2.6
89,050	+	EX31_RS03035	0.12	-3.3
89,051	-	EX31_RS03035	0.13	-2.9
89,051	-	EX31_RS03035	0.13	-1.9
89,051	-	EX31_RS03035	0.13	-3.8
89,051	-	EX31_RS03035	0.13	-1.3
89,051	-	EX31_RS03035	0.13	-1.1
89,051	-	EX31_RS03035	0.13	-1.8
89,051	-	EX31_RS03035	0.13	-2.9
89,051	-	EX31_RS03035	0.13	-1.8
89,051	-	EX31_RS03035	0.13	-2.9
89,051	-	EX31_RS03035	0.13	-2.3
89,051	-	EX31_RS03035	0.13	-2.9
89,056	+	EX31_RS03035	0.13	-1.3
89,056	+	EX31_RS03035	0.13	-2.8
89,057	-	EX31_RS03035	0.13	-2.4
89,057	-	EX31_RS03035	0.13	-2.0
89,057	-	EX31_RS03035	0.13	-3.5
89,057	-	EX31_RS03035	0.13	-0.3
89,360	+	EX31_RS03035	0.61	-2.5
89,360	+	EX31_RS03035	0.61	-1.3
89,361	-	EX31_RS03035	0.61	-3.4
89,361	-	EX31_RS03035	0.61	-2.1
89,416	+	EX31_RS03035	0.70	-0.9
89,417	-	EX31_RS03035	0.70	-1.3
89,417	-	EX31_RS03035	0.70	-0.9
89,459	-	EX31_RS03035	0.76	-3.3
89,463	+	EX31_RS03035	0.77	-0.5
89,463	+	EX31_RS03035	0.77	-3.3
89,464	-	EX31_RS03035	0.77	-3.5
89,464	-	EX31_RS03035	0.77	-2.1
89,546	+			+0.1
89,547	-			-2.6
89,584	-			-2.9
89,609	+			-1.1
89,623	+			-2.5
89,624	-			-1.8
89,624	-			-3.0
89,628	-			-2.6
89,628	-			-4.0
89,637	+			-3.3
89,637	+			-2.6
89,637	+			-4.2
89,638	-			-3.2
89,638	-			+0.1
89,638	-			-3.7
89,659	+			-2.1
89,659	+			-1.9
89,660	-			-0.5
89,660	-			+0.3
89,866	-	EX31_RS03040	0.20	-1.2
89,866	-	EX31_RS03040	0.20	-0.6
89,866	-	EX31_RS03040	0.20	-0.9
89,866	-	EX31_RS03040	0.20	-0.4
89,866	-	EX31_RS03040	0.20	-1.3
89,946	+	EX31_RS03040	0.26	-1.3
89,946	+	EX31_RS03040	0.26	-3.2
89,946	+	EX31_RS03040	0.26	-0.5
89,947	-	EX31_RS03040	0.26	-0.5
89,947	-	EX31_RS03040	0.26	-1.9

Or see this region's nucleotide sequence