Strain Fitness in Rahnella sp. WP5 around EX31_RS02830

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02825 and EX31_RS02830 are separated by 94 nucleotidesEX31_RS02830 and EX31_RS02835 are separated by 295 nucleotides EX31_RS02825: EX31_RS02825 - dihydrodipicolinate synthase family protein, at 37,589 to 38,518 _RS02825 EX31_RS02830: EX31_RS02830 - ribokinase, at 38,613 to 39,827 _RS02830 EX31_RS02835: EX31_RS02835 - endonuclease/exonuclease/phosphatase family protein, at 40,123 to 40,884 _RS02835 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.735 kb on - strand, within EX31_RS02825at 37.839 kb on + strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.840 kb on - strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.851 kb on + strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.852 kb on - strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.853 kb on + strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.854 kb on - strand, within EX31_RS02825at 37.894 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.939 kb on + strand, within EX31_RS02825at 37.940 kb on - strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 37.957 kb on + strand, within EX31_RS02825at 38.018 kb on + strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.019 kb on - strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.046 kb on + strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.047 kb on - strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.097 kb on + strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.098 kb on - strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.099 kb on + strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.100 kb on - strand, within EX31_RS02825at 38.141 kb on - strand, within EX31_RS02825at 38.263 kb on + strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.264 kb on - strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.402 kb on + strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.403 kb on - strand, within EX31_RS02825at 38.418 kb on + strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.419 kb on - strand, within EX31_RS02825at 38.507 kb on - strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.512 kb on + strandat 38.513 kb on - strandat 38.513 kb on - strandat 38.602 kb on + strandat 38.602 kb on + strandat 38.614 kb on + strandat 38.708 kb on - strandat 38.744 kb on + strand, within EX31_RS02830at 38.745 kb on - strand, within EX31_RS02830at 38.790 kb on - strand, within EX31_RS02830at 38.834 kb on + strand, within EX31_RS02830at 38.870 kb on + strand, within EX31_RS02830at 38.871 kb on - strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.873 kb on + strand, within EX31_RS02830at 38.904 kb on - strand, within EX31_RS02830at 38.931 kb on + strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.979 kb on - strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.984 kb on + strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.985 kb on - strand, within EX31_RS02830at 38.988 kb on - strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.998 kb on + strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 38.999 kb on - strand, within EX31_RS02830at 39.024 kb on - strand, within EX31_RS02830at 39.199 kb on + strand, within EX31_RS02830at 39.200 kb on - strand, within EX31_RS02830at 39.200 kb on - strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.238 kb on + strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.239 kb on - strand, within EX31_RS02830at 39.277 kb on + strand, within EX31_RS02830at 39.277 kb on + strand, within EX31_RS02830at 39.319 kb on + strand, within EX31_RS02830at 39.319 kb on + strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830at 39.320 kb on - strand, within EX31_RS02830at 39.524 kb on + strand, within EX31_RS02830at 39.524 kb on + strand, within EX31_RS02830at 39.525 kb on - strand, within EX31_RS02830at 39.525 kb on - strand, within EX31_RS02830at 39.555 kb on + strand, within EX31_RS02830at 39.555 kb on + strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.556 kb on - strand, within EX31_RS02830at 39.627 kb on + strand, within EX31_RS02830at 39.628 kb on - strand, within EX31_RS02830at 39.652 kb on - strand, within EX31_RS02830at 39.652 kb on - strand, within EX31_RS02830at 39.791 kb on - strandat 39.827 kb on + strandat 39.827 kb on + strandat 39.855 kb on + strandat 39.855 kb on + strandat 39.855 kb on + strandat 39.855 kb on + strandat 39.856 kb on - strandat 39.856 kb on - strandat 39.856 kb on - strandat 39.893 kb on - strandat 39.897 kb on + strandat 39.897 kb on + strandat 40.079 kb on + strandat 40.082 kb on - strandat 40.082 kb on - strandat 40.082 kb on - strandat 40.087 kb on - strandat 40.087 kb on - strandat 40.168 kb on - strandat 40.168 kb on - strandat 40.171 kb on - strandat 40.330 kb on + strand, within EX31_RS02835at 40.427 kb on - strand, within EX31_RS02835at 40.441 kb on + strand, within EX31_RS02835at 40.442 kb on - strand, within EX31_RS02835at 40.492 kb on + strand, within EX31_RS02835at 40.492 kb on + strand, within EX31_RS02835at 40.493 kb on - strand, within EX31_RS02835at 40.493 kb on - strand, within EX31_RS02835at 40.493 kb on - strand, within EX31_RS02835at 40.493 kb on - strand, within EX31_RS02835at 40.493 kb on - strand, within EX31_RS02835at 40.544 kb on + strand, within EX31_RS02835at 40.545 kb on - strand, within EX31_RS02835at 40.545 kb on - strand, within EX31_RS02835at 40.683 kb on + strand, within EX31_RS02835at 40.684 kb on - strand, within EX31_RS02835at 40.684 kb on - strand, within EX31_RS02835at 40.688 kb on + strand, within EX31_RS02835at 40.689 kb on - strand, within EX31_RS02835at 40.689 kb on - strand, within EX31_RS02835at 40.689 kb on - strand, within EX31_RS02835at 40.783 kb on + strand, within EX31_RS02835at 40.783 kb on + strand, within EX31_RS02835at 40.783 kb on + strand, within EX31_RS02835at 40.784 kb on - strand, within EX31_RS02835at 40.784 kb on - strand, within EX31_RS02835at 40.784 kb on - strand, within EX31_RS02835at 40.784 kb on - strand, within EX31_RS02835at 40.784 kb on - strand, within EX31_RS02835

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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37,735 - EX31_RS02825 0.16 -0.4
37,735 - EX31_RS02825 0.16 -1.0
37,735 - EX31_RS02825 0.16 -0.1
37,839 + EX31_RS02825 0.27 +0.5
37,840 - EX31_RS02825 0.27 +0.1
37,840 - EX31_RS02825 0.27 +0.9
37,851 + EX31_RS02825 0.28 -1.3
37,851 + EX31_RS02825 0.28 +0.3
37,851 + EX31_RS02825 0.28 +0.4
37,852 - EX31_RS02825 0.28 -1.1
37,852 - EX31_RS02825 0.28 +0.4
37,852 - EX31_RS02825 0.28 +1.6
37,853 + EX31_RS02825 0.28 -0.5
37,853 + EX31_RS02825 0.28 +0.1
37,853 + EX31_RS02825 0.28 -1.8
37,854 - EX31_RS02825 0.28 +0.8
37,854 - EX31_RS02825 0.28 +0.1
37,854 - EX31_RS02825 0.28 +0.9
37,854 - EX31_RS02825 0.28 -1.3
37,894 + EX31_RS02825 0.33 -0.8
37,939 + EX31_RS02825 0.38 -0.2
37,939 + EX31_RS02825 0.38 +0.1
37,940 - EX31_RS02825 0.38 -0.5
37,957 + EX31_RS02825 0.40 +0.1
37,957 + EX31_RS02825 0.40 +0.7
38,018 + EX31_RS02825 0.46 -0.9
38,019 - EX31_RS02825 0.46 +0.1
38,019 - EX31_RS02825 0.46 +0.8
38,019 - EX31_RS02825 0.46 +0.5
38,046 + EX31_RS02825 0.49 +0.1
38,046 + EX31_RS02825 0.49 +1.1
38,047 - EX31_RS02825 0.49 +0.7
38,047 - EX31_RS02825 0.49 -0.5
38,047 - EX31_RS02825 0.49 +0.1
38,047 - EX31_RS02825 0.49 +0.7
38,097 + EX31_RS02825 0.55 +0.6
38,097 + EX31_RS02825 0.55 -1.1
38,097 + EX31_RS02825 0.55 +0.6
38,097 + EX31_RS02825 0.55 -1.3
38,097 + EX31_RS02825 0.55 -0.9
38,097 + EX31_RS02825 0.55 +1.1
38,097 + EX31_RS02825 0.55 -0.0
38,097 + EX31_RS02825 0.55 +0.3
38,098 - EX31_RS02825 0.55 +0.5
38,098 - EX31_RS02825 0.55 +0.4
38,098 - EX31_RS02825 0.55 +0.6
38,098 - EX31_RS02825 0.55 +2.6
38,098 - EX31_RS02825 0.55 -0.3
38,098 - EX31_RS02825 0.55 -1.5
38,098 - EX31_RS02825 0.55 +1.3
38,098 - EX31_RS02825 0.55 +0.7
38,098 - EX31_RS02825 0.55 -0.7
38,098 - EX31_RS02825 0.55 +0.9
38,099 + EX31_RS02825 0.55 -0.4
38,099 + EX31_RS02825 0.55 -0.3
38,099 + EX31_RS02825 0.55 -0.9
38,099 + EX31_RS02825 0.55 +0.5
38,099 + EX31_RS02825 0.55 +1.1
38,099 + EX31_RS02825 0.55 -1.4
38,099 + EX31_RS02825 0.55 -0.4
38,099 + EX31_RS02825 0.55 +0.3
38,099 + EX31_RS02825 0.55 +1.9
38,099 + EX31_RS02825 0.55 +1.5
38,099 + EX31_RS02825 0.55 -0.7
38,100 - EX31_RS02825 0.55 -0.8
38,100 - EX31_RS02825 0.55 -1.3
38,100 - EX31_RS02825 0.55 -0.5
38,100 - EX31_RS02825 0.55 +0.8
38,100 - EX31_RS02825 0.55 +0.1
38,141 - EX31_RS02825 0.59 +0.2
38,263 + EX31_RS02825 0.72 +0.7
38,264 - EX31_RS02825 0.73 +1.1
38,264 - EX31_RS02825 0.73 +1.1
38,402 + EX31_RS02825 0.87 -0.9
38,402 + EX31_RS02825 0.87 -0.1
38,402 + EX31_RS02825 0.87 +0.1
38,402 + EX31_RS02825 0.87 +0.5
38,402 + EX31_RS02825 0.87 -1.3
38,402 + EX31_RS02825 0.87 +1.6
38,402 + EX31_RS02825 0.87 -1.3
38,402 + EX31_RS02825 0.87 -0.7
38,403 - EX31_RS02825 0.88 -0.2
38,403 - EX31_RS02825 0.88 +0.1
38,418 + EX31_RS02825 0.89 -0.3
38,419 - EX31_RS02825 0.89 +1.1
38,419 - EX31_RS02825 0.89 -1.5
38,507 - +0.8
38,512 + -0.5
38,512 + +0.3
38,512 + +0.8
38,512 + +2.1
38,513 - -0.5
38,513 - -0.4
38,602 + +0.1
38,602 + +2.1
38,614 + -0.2
38,708 - +0.2
38,744 + EX31_RS02830 0.11 +0.2
38,745 - EX31_RS02830 0.11 +0.6
38,790 - EX31_RS02830 0.15 +0.2
38,834 + EX31_RS02830 0.18 +1.2
38,870 + EX31_RS02830 0.21 -2.1
38,871 - EX31_RS02830 0.21 +2.1
38,873 + EX31_RS02830 0.21 -0.2
38,873 + EX31_RS02830 0.21 +0.9
38,873 + EX31_RS02830 0.21 -1.3
38,904 - EX31_RS02830 0.24 +0.4
38,931 + EX31_RS02830 0.26 -0.5
38,979 - EX31_RS02830 0.30 +0.1
38,979 - EX31_RS02830 0.30 +1.1
38,979 - EX31_RS02830 0.30 -0.4
38,979 - EX31_RS02830 0.30 +0.9
38,984 + EX31_RS02830 0.31 -0.9
38,984 + EX31_RS02830 0.31 +0.4
38,984 + EX31_RS02830 0.31 -0.5
38,984 + EX31_RS02830 0.31 -0.1
38,985 - EX31_RS02830 0.31 +2.4
38,985 - EX31_RS02830 0.31 +1.1
38,985 - EX31_RS02830 0.31 -0.7
38,985 - EX31_RS02830 0.31 +1.1
38,988 - EX31_RS02830 0.31 +0.6
38,998 + EX31_RS02830 0.32 -0.5
38,998 + EX31_RS02830 0.32 -0.9
38,998 + EX31_RS02830 0.32 -0.7
38,998 + EX31_RS02830 0.32 +0.1
38,998 + EX31_RS02830 0.32 -0.5
38,999 - EX31_RS02830 0.32 +0.4
38,999 - EX31_RS02830 0.32 -0.2
38,999 - EX31_RS02830 0.32 -0.5
38,999 - EX31_RS02830 0.32 +0.1
39,024 - EX31_RS02830 0.34 +1.2
39,199 + EX31_RS02830 0.48 -0.8
39,200 - EX31_RS02830 0.48 -1.3
39,200 - EX31_RS02830 0.48 +0.5
39,238 + EX31_RS02830 0.51 -0.6
39,238 + EX31_RS02830 0.51 +0.2
39,238 + EX31_RS02830 0.51 +0.2
39,238 + EX31_RS02830 0.51 -0.1
39,238 + EX31_RS02830 0.51 +1.6
39,239 - EX31_RS02830 0.52 +0.5
39,239 - EX31_RS02830 0.52 -0.3
39,239 - EX31_RS02830 0.52 -1.1
39,239 - EX31_RS02830 0.52 +1.6
39,239 - EX31_RS02830 0.52 +0.1
39,239 - EX31_RS02830 0.52 +0.8
39,277 + EX31_RS02830 0.55 -1.3
39,277 + EX31_RS02830 0.55 -0.9
39,319 + EX31_RS02830 0.58 -0.5
39,319 + EX31_RS02830 0.58 +0.5
39,320 - EX31_RS02830 0.58 +1.1
39,320 - EX31_RS02830 0.58 +0.4
39,320 - EX31_RS02830 0.58 -0.5
39,524 + EX31_RS02830 0.75 -0.1
39,524 + EX31_RS02830 0.75 -0.5
39,525 - EX31_RS02830 0.75 +0.2
39,525 - EX31_RS02830 0.75 +1.1
39,555 + EX31_RS02830 0.78 -1.3
39,555 + EX31_RS02830 0.78 +0.1
39,556 - EX31_RS02830 0.78 -0.1
39,556 - EX31_RS02830 0.78 +0.2
39,556 - EX31_RS02830 0.78 -0.1
39,556 - EX31_RS02830 0.78 +1.3
39,556 - EX31_RS02830 0.78 +0.7
39,556 - EX31_RS02830 0.78 +0.3
39,556 - EX31_RS02830 0.78 +1.3
39,627 + EX31_RS02830 0.83 -0.9
39,628 - EX31_RS02830 0.84 +0.9
39,652 - EX31_RS02830 0.86 +0.4
39,652 - EX31_RS02830 0.86 +1.2
39,791 - -0.2
39,827 + -1.4
39,827 + -0.2
39,855 + -0.7
39,855 + +0.1
39,855 + +0.7
39,855 + -0.8
39,856 - +1.5
39,856 - +0.1
39,856 - +0.2
39,893 - -0.2
39,897 + -0.8
39,897 + +0.1
40,079 + +0.2
40,082 - +1.1
40,082 - +0.1
40,082 - +0.1
40,087 - -1.2
40,087 - -0.5
40,168 - -1.5
40,168 - +1.1
40,171 - +0.9
40,330 + EX31_RS02835 0.27 +0.3
40,427 - EX31_RS02835 0.40 +0.8
40,441 + EX31_RS02835 0.42 +1.1
40,442 - EX31_RS02835 0.42 +0.5
40,492 + EX31_RS02835 0.48 +1.1
40,492 + EX31_RS02835 0.48 +1.1
40,493 - EX31_RS02835 0.49 -1.0
40,493 - EX31_RS02835 0.49 -1.8
40,493 - EX31_RS02835 0.49 +0.1
40,493 - EX31_RS02835 0.49 -1.1
40,493 - EX31_RS02835 0.49 +1.5
40,544 + EX31_RS02835 0.55 -1.9
40,545 - EX31_RS02835 0.55 +0.1
40,545 - EX31_RS02835 0.55 -1.3
40,683 + EX31_RS02835 0.73 +0.3
40,684 - EX31_RS02835 0.74 -0.9
40,684 - EX31_RS02835 0.74 +0.3
40,688 + EX31_RS02835 0.74 -0.5
40,689 - EX31_RS02835 0.74 +1.2
40,689 - EX31_RS02835 0.74 -0.1
40,689 - EX31_RS02835 0.74 -1.4
40,783 + EX31_RS02835 0.87 +0.5
40,783 + EX31_RS02835 0.87 +0.1
40,783 + EX31_RS02835 0.87 +1.6
40,784 - EX31_RS02835 0.87 -0.2
40,784 - EX31_RS02835 0.87 -0.2
40,784 - EX31_RS02835 0.87 +2.1
40,784 - EX31_RS02835 0.87 -0.3
40,784 - EX31_RS02835 0.87 +0.6

Or see this region's nucleotide sequence