Strain Fitness in Rahnella sp. WP5 around EX31_RS02450

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02445 and EX31_RS02450 overlap by 32 nucleotidesEX31_RS02450 and EX31_RS02455 are separated by 119 nucleotidesEX31_RS02455 and EX31_RS02460 overlap by 4 nucleotides EX31_RS02445: EX31_RS02445 - AMP-binding protein, at 518,804 to 520,357 _RS02445 EX31_RS02450: EX31_RS02450 - AMP-binding protein, at 520,326 to 521,840 _RS02450 EX31_RS02455: EX31_RS02455 - VOC family protein, at 521,960 to 522,364 _RS02455 EX31_RS02460: EX31_RS02460 - acyl-CoA dehydrogenase, at 522,361 to 523,509 _RS02460 Position (kb) 520 521 522Strain fitness (log2 ratio) -2 -1 0 1 2 3at 519.341 kb on - strand, within EX31_RS02445at 519.429 kb on + strand, within EX31_RS02445at 519.672 kb on + strand, within EX31_RS02445at 519.672 kb on + strand, within EX31_RS02445at 519.673 kb on - strand, within EX31_RS02445at 519.710 kb on + strand, within EX31_RS02445at 519.710 kb on + strand, within EX31_RS02445at 519.711 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.754 kb on + strand, within EX31_RS02445at 519.755 kb on - strand, within EX31_RS02445at 519.954 kb on - strand, within EX31_RS02445at 519.995 kb on + strand, within EX31_RS02445at 519.995 kb on + strand, within EX31_RS02445at 519.996 kb on - strand, within EX31_RS02445at 520.255 kb on + strandat 520.325 kb on + strandat 520.410 kb on + strandat 520.410 kb on + strandat 520.410 kb on + strandat 520.411 kb on - strandat 520.492 kb on - strand, within EX31_RS02450at 520.752 kb on + strand, within EX31_RS02450at 520.753 kb on - strand, within EX31_RS02450at 520.753 kb on - strand, within EX31_RS02450at 520.877 kb on + strand, within EX31_RS02450at 520.878 kb on - strand, within EX31_RS02450at 520.974 kb on - strand, within EX31_RS02450at 521.073 kb on - strand, within EX31_RS02450at 521.096 kb on + strand, within EX31_RS02450at 521.122 kb on - strand, within EX31_RS02450at 521.122 kb on - strand, within EX31_RS02450at 521.164 kb on + strand, within EX31_RS02450at 521.164 kb on + strand, within EX31_RS02450at 521.164 kb on + strand, within EX31_RS02450at 521.165 kb on - strand, within EX31_RS02450at 521.165 kb on - strand, within EX31_RS02450at 521.235 kb on - strand, within EX31_RS02450at 521.235 kb on - strand, within EX31_RS02450at 521.504 kb on + strand, within EX31_RS02450at 521.504 kb on + strand, within EX31_RS02450at 521.531 kb on + strand, within EX31_RS02450at 521.531 kb on + strand, within EX31_RS02450at 521.531 kb on + strand, within EX31_RS02450at 521.532 kb on - strand, within EX31_RS02450at 521.567 kb on - strand, within EX31_RS02450at 521.659 kb on + strand, within EX31_RS02450at 521.730 kb on + strandat 521.860 kb on + strandat 521.860 kb on + strandat 521.861 kb on - strandat 521.876 kb on + strandat 521.876 kb on + strandat 521.906 kb on + strandat 521.907 kb on - strandat 521.929 kb on + strandat 521.930 kb on - strandat 521.931 kb on + strandat 521.932 kb on - strandat 521.932 kb on - strandat 521.937 kb on + strandat 521.938 kb on - strandat 521.956 kb on + strandat 521.957 kb on - strandat 521.957 kb on - strandat 521.957 kb on - strandat 521.957 kb on - strandat 521.958 kb on + strandat 521.958 kb on + strandat 521.958 kb on + strandat 521.959 kb on - strandat 522.048 kb on - strand, within EX31_RS02455at 522.049 kb on + strand, within EX31_RS02455at 522.050 kb on - strand, within EX31_RS02455at 522.109 kb on + strand, within EX31_RS02455at 522.143 kb on - strand, within EX31_RS02455at 522.160 kb on + strand, within EX31_RS02455at 522.200 kb on - strand, within EX31_RS02455at 522.264 kb on + strand, within EX31_RS02455at 522.289 kb on + strand, within EX31_RS02455at 522.508 kb on - strand, within EX31_RS02460at 522.532 kb on + strand, within EX31_RS02460at 522.533 kb on - strand, within EX31_RS02460at 522.599 kb on - strand, within EX31_RS02460at 522.615 kb on + strand, within EX31_RS02460at 522.616 kb on - strand, within EX31_RS02460at 522.731 kb on + strand, within EX31_RS02460at 522.731 kb on + strand, within EX31_RS02460at 522.731 kb on + strand, within EX31_RS02460at 522.732 kb on - strand, within EX31_RS02460

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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519,341 - EX31_RS02445 0.35 +1.3
519,429 + EX31_RS02445 0.40 -0.2
519,672 + EX31_RS02445 0.56 +0.5
519,672 + EX31_RS02445 0.56 +0.6
519,673 - EX31_RS02445 0.56 -1.0
519,710 + EX31_RS02445 0.58 -1.7
519,710 + EX31_RS02445 0.58 +1.2
519,711 - EX31_RS02445 0.58 -1.3
519,752 - EX31_RS02445 0.61 -0.0
519,752 - EX31_RS02445 0.61 -1.5
519,752 - EX31_RS02445 0.61 -0.4
519,754 + EX31_RS02445 0.61 -0.0
519,755 - EX31_RS02445 0.61 -1.6
519,954 - EX31_RS02445 0.74 +2.0
519,995 + EX31_RS02445 0.77 +1.3
519,995 + EX31_RS02445 0.77 -0.3
519,996 - EX31_RS02445 0.77 +0.6
520,255 + +1.6
520,325 + -2.3
520,410 + -1.3
520,410 + -2.3
520,410 + +0.9
520,411 - +0.6
520,492 - EX31_RS02450 0.11 +1.0
520,752 + EX31_RS02450 0.28 -0.4
520,753 - EX31_RS02450 0.28 +0.8
520,753 - EX31_RS02450 0.28 +1.2
520,877 + EX31_RS02450 0.36 -1.6
520,878 - EX31_RS02450 0.36 +0.1
520,974 - EX31_RS02450 0.43 +0.4
521,073 - EX31_RS02450 0.49 +0.7
521,096 + EX31_RS02450 0.51 +0.4
521,122 - EX31_RS02450 0.53 +0.8
521,122 - EX31_RS02450 0.53 +2.6
521,164 + EX31_RS02450 0.55 +1.9
521,164 + EX31_RS02450 0.55 +0.4
521,164 + EX31_RS02450 0.55 -0.5
521,165 - EX31_RS02450 0.55 -1.7
521,165 - EX31_RS02450 0.55 +1.4
521,235 - EX31_RS02450 0.60 -0.3
521,235 - EX31_RS02450 0.60 +1.0
521,504 + EX31_RS02450 0.78 +1.4
521,504 + EX31_RS02450 0.78 -0.8
521,531 + EX31_RS02450 0.80 +1.1
521,531 + EX31_RS02450 0.80 -1.2
521,531 + EX31_RS02450 0.80 +0.5
521,532 - EX31_RS02450 0.80 -0.6
521,567 - EX31_RS02450 0.82 +1.3
521,659 + EX31_RS02450 0.88 +1.6
521,730 + -2.5
521,860 + +0.4
521,860 + +0.4
521,861 - +1.0
521,876 + -1.7
521,876 + -0.6
521,906 + -0.3
521,907 - +0.4
521,929 + +1.0
521,930 - -1.0
521,931 + -1.9
521,932 - +0.4
521,932 - +3.0
521,937 + +0.4
521,938 - +0.8
521,956 + -0.1
521,957 - -0.6
521,957 - -0.7
521,957 - -0.6
521,957 - -0.6
521,958 + +0.1
521,958 + -1.8
521,958 + -1.3
521,959 - +1.0
522,048 - EX31_RS02455 0.22 +0.5
522,049 + EX31_RS02455 0.22 -2.1
522,050 - EX31_RS02455 0.22 -2.2
522,109 + EX31_RS02455 0.37 -0.1
522,143 - EX31_RS02455 0.45 +0.1
522,160 + EX31_RS02455 0.49 -1.0
522,200 - EX31_RS02455 0.59 -1.2
522,264 + EX31_RS02455 0.75 -0.6
522,289 + EX31_RS02455 0.81 -0.3
522,508 - EX31_RS02460 0.13 -0.7
522,532 + EX31_RS02460 0.15 +0.3
522,533 - EX31_RS02460 0.15 -0.5
522,599 - EX31_RS02460 0.21 -2.3
522,615 + EX31_RS02460 0.22 -0.4
522,616 - EX31_RS02460 0.22 +2.0
522,731 + EX31_RS02460 0.32 +0.6
522,731 + EX31_RS02460 0.32 -0.1
522,731 + EX31_RS02460 0.32 +1.0
522,732 - EX31_RS02460 0.32 +1.0

Or see this region's nucleotide sequence