Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01600 and EX31_RS01605 are separated by 7 nucleotides EX31_RS01605 and EX31_RS01610 overlap by 4 nucleotides EX31_RS01610 and EX31_RS01615 are separated by 8 nucleotides EX31_RS01615 and EX31_RS01620 overlap by 8 nucleotides EX31_RS01620 and EX31_RS01625 are separated by 85 nucleotides
EX31_RS01600: EX31_RS01600 - tail fiber protein, at 357,406 to 358,143
_RS01600
EX31_RS01605: EX31_RS01605 - tail protein, at 358,151 to 358,555
_RS01605
EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103
_RS01610
EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387
_RS01615
EX31_RS01620: EX31_RS01620 - DUF2190 family protein, at 359,380 to 359,706
_RS01620
EX31_RS01625: EX31_RS01625 - Clp protease ClpP, at 359,792 to 361,750
_RS01625
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.144 kb on - strand at 358.158 kb on - strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.162 kb on - strand at 358.174 kb on - strand at 358.222 kb on - strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.227 kb on + strand, within EX31_RS01605 at 358.228 kb on - strand, within EX31_RS01605 at 358.350 kb on - strand, within EX31_RS01605 at 358.423 kb on - strand, within EX31_RS01605 at 358.550 kb on + strand at 358.550 kb on + strand at 358.560 kb on + strand at 358.646 kb on + strand, within EX31_RS01610 at 358.646 kb on + strand, within EX31_RS01610 at 358.647 kb on - strand, within EX31_RS01610 at 358.657 kb on - strand, within EX31_RS01610 at 358.774 kb on - strand, within EX31_RS01610 at 359.058 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.491 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620 at 359.621 kb on - strand, within EX31_RS01620 at 359.621 kb on - strand, within EX31_RS01620 at 359.665 kb on - strand, within EX31_RS01620 at 359.743 kb on + strand at 359.744 kb on - strand at 359.744 kb on - strand at 359.747 kb on + strand at 359.794 kb on - strand at 359.904 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.928 kb on + strand at 360.268 kb on + strand, within EX31_RS01625 at 360.306 kb on + strand, within EX31_RS01625 at 360.306 kb on + strand, within EX31_RS01625 at 360.307 kb on - strand, within EX31_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 358,144 - +1.0 358,158 - +0.7 358,161 + +0.7 358,162 - -1.6 358,162 - -0.6 358,162 - +1.0 358,162 - +0.5 358,162 - -2.2 358,162 - -0.3 358,162 - -0.0 358,174 - +0.4 358,222 - EX31_RS01605 0.18 -0.0 358,227 + EX31_RS01605 0.19 +0.4 358,227 + EX31_RS01605 0.19 -0.8 358,228 - EX31_RS01605 0.19 +0.4 358,350 - EX31_RS01605 0.49 +0.2 358,423 - EX31_RS01605 0.67 +0.7 358,550 + +1.0 358,550 + -0.6 358,560 + +1.4 358,646 + EX31_RS01610 0.17 -0.0 358,646 + EX31_RS01610 0.17 +0.6 358,647 - EX31_RS01610 0.17 -0.0 358,657 - EX31_RS01610 0.19 +0.6 358,774 - EX31_RS01610 0.40 +0.4 359,058 + -1.5 359,103 + +0.5 359,103 + +1.0 359,103 + -0.0 359,168 - EX31_RS01615 0.20 +1.0 359,168 - EX31_RS01615 0.20 -2.0 359,168 - EX31_RS01615 0.20 +0.1 359,183 - EX31_RS01615 0.26 +1.0 359,183 - EX31_RS01615 0.26 -1.7 359,491 - EX31_RS01620 0.34 +0.2 359,493 - EX31_RS01620 0.35 -1.4 359,493 - EX31_RS01620 0.35 +0.2 359,621 - EX31_RS01620 0.74 -0.2 359,621 - EX31_RS01620 0.74 +0.6 359,665 - EX31_RS01620 0.87 +0.8 359,743 + -0.1 359,744 - +1.2 359,744 - +1.8 359,747 + +0.4 359,794 - -0.1 359,904 + +0.8 359,904 + -0.6 359,905 - +2.6 359,905 - -1.4 359,928 + +0.6 360,268 + EX31_RS01625 0.24 -1.6 360,306 + EX31_RS01625 0.26 -2.4 360,306 + EX31_RS01625 0.26 +0.2 360,307 - EX31_RS01625 0.26 +0.3
Or see this region's nucleotide sequence