Strain Fitness in Rahnella sp. WP5 around EX31_RS01390

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01385 and EX31_RS01390 are separated by 140 nucleotidesEX31_RS01390 and EX31_RS01395 are separated by 129 nucleotides EX31_RS01385: EX31_RS01385 - EamA family transporter, at 308,651 to 309,574 _RS01385 EX31_RS01390: EX31_RS01390 - hypothetical protein, at 309,715 to 310,437 _RS01390 EX31_RS01395: EX31_RS01395 - DHA2 family efflux MFS transporter permease subunit, at 310,567 to 312,012 _RS01395 Position (kb) 309 310 311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 308.872 kb on - strand, within EX31_RS01385at 308.881 kb on - strand, within EX31_RS01385at 308.899 kb on + strand, within EX31_RS01385at 308.971 kb on + strand, within EX31_RS01385at 308.971 kb on + strand, within EX31_RS01385at 308.972 kb on - strand, within EX31_RS01385at 308.972 kb on - strand, within EX31_RS01385at 308.974 kb on - strand, within EX31_RS01385at 308.974 kb on - strand, within EX31_RS01385at 308.974 kb on - strand, within EX31_RS01385at 309.094 kb on - strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.330 kb on + strand, within EX31_RS01385at 309.331 kb on - strand, within EX31_RS01385at 309.331 kb on - strand, within EX31_RS01385at 309.331 kb on - strand, within EX31_RS01385at 309.546 kb on - strandat 309.632 kb on + strandat 309.632 kb on + strandat 309.633 kb on - strandat 309.643 kb on - strandat 309.651 kb on + strandat 309.693 kb on + strandat 309.714 kb on - strandat 309.908 kb on - strand, within EX31_RS01390at 310.179 kb on + strand, within EX31_RS01390at 310.179 kb on + strand, within EX31_RS01390at 310.180 kb on - strand, within EX31_RS01390at 310.435 kb on + strandat 310.473 kb on + strandat 310.473 kb on + strandat 310.473 kb on + strandat 310.474 kb on - strandat 310.511 kb on - strandat 310.620 kb on + strandat 310.620 kb on + strandat 310.621 kb on - strandat 310.768 kb on + strand, within EX31_RS01395at 310.768 kb on + strand, within EX31_RS01395at 310.769 kb on - strand, within EX31_RS01395at 310.769 kb on - strand, within EX31_RS01395at 310.770 kb on + strand, within EX31_RS01395at 310.770 kb on + strand, within EX31_RS01395at 310.771 kb on - strand, within EX31_RS01395at 310.926 kb on + strand, within EX31_RS01395at 310.926 kb on + strand, within EX31_RS01395at 310.926 kb on + strand, within EX31_RS01395at 310.927 kb on - strand, within EX31_RS01395at 310.927 kb on - strand, within EX31_RS01395at 310.927 kb on - strand, within EX31_RS01395at 311.013 kb on + strand, within EX31_RS01395at 311.013 kb on + strand, within EX31_RS01395at 311.014 kb on - strand, within EX31_RS01395at 311.086 kb on + strand, within EX31_RS01395at 311.110 kb on + strand, within EX31_RS01395at 311.111 kb on - strand, within EX31_RS01395at 311.111 kb on - strand, within EX31_RS01395at 311.213 kb on + strand, within EX31_RS01395at 311.213 kb on + strand, within EX31_RS01395at 311.213 kb on + strand, within EX31_RS01395at 311.214 kb on - strand, within EX31_RS01395at 311.279 kb on + strand, within EX31_RS01395at 311.279 kb on + strand, within EX31_RS01395at 311.294 kb on + strand, within EX31_RS01395at 311.294 kb on + strand, within EX31_RS01395at 311.295 kb on - strand, within EX31_RS01395at 311.404 kb on - strand, within EX31_RS01395at 311.409 kb on + strand, within EX31_RS01395at 311.410 kb on - strand, within EX31_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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308,872 - EX31_RS01385 0.24 -2.2
308,881 - EX31_RS01385 0.25 +0.2
308,899 + EX31_RS01385 0.27 +1.3
308,971 + EX31_RS01385 0.35 +1.6
308,971 + EX31_RS01385 0.35 -1.0
308,972 - EX31_RS01385 0.35 -1.0
308,972 - EX31_RS01385 0.35 +0.6
308,974 - EX31_RS01385 0.35 +2.0
308,974 - EX31_RS01385 0.35 +0.6
308,974 - EX31_RS01385 0.35 -0.7
309,094 - EX31_RS01385 0.48 +0.3
309,330 + EX31_RS01385 0.73 +0.4
309,330 + EX31_RS01385 0.73 -0.6
309,330 + EX31_RS01385 0.73 +1.4
309,330 + EX31_RS01385 0.73 +3.0
309,330 + EX31_RS01385 0.73 +0.7
309,330 + EX31_RS01385 0.73 +1.0
309,331 - EX31_RS01385 0.74 +0.4
309,331 - EX31_RS01385 0.74 -1.6
309,331 - EX31_RS01385 0.74 -0.4
309,546 - +2.0
309,632 + +2.0
309,632 + -1.2
309,633 - -2.2
309,643 - +1.0
309,651 + -0.6
309,693 + +1.0
309,714 - +0.6
309,908 - EX31_RS01390 0.27 -0.6
310,179 + EX31_RS01390 0.64 +1.7
310,179 + EX31_RS01390 0.64 -1.6
310,180 - EX31_RS01390 0.64 -1.2
310,435 + -0.0
310,473 + +0.7
310,473 + +0.4
310,473 + -0.0
310,474 - +0.2
310,511 - +1.6
310,620 + +1.4
310,620 + +1.1
310,621 - -0.8
310,768 + EX31_RS01395 0.14 +1.7
310,768 + EX31_RS01395 0.14 +0.1
310,769 - EX31_RS01395 0.14 +0.4
310,769 - EX31_RS01395 0.14 -0.4
310,770 + EX31_RS01395 0.14 -0.0
310,770 + EX31_RS01395 0.14 -1.6
310,771 - EX31_RS01395 0.14 -1.0
310,926 + EX31_RS01395 0.25 +1.0
310,926 + EX31_RS01395 0.25 +0.3
310,926 + EX31_RS01395 0.25 +0.4
310,927 - EX31_RS01395 0.25 -0.0
310,927 - EX31_RS01395 0.25 +0.4
310,927 - EX31_RS01395 0.25 -0.0
311,013 + EX31_RS01395 0.31 -0.6
311,013 + EX31_RS01395 0.31 +1.0
311,014 - EX31_RS01395 0.31 +1.6
311,086 + EX31_RS01395 0.36 -0.5
311,110 + EX31_RS01395 0.38 +1.3
311,111 - EX31_RS01395 0.38 +1.6
311,111 - EX31_RS01395 0.38 +0.4
311,213 + EX31_RS01395 0.45 +2.0
311,213 + EX31_RS01395 0.45 +2.3
311,213 + EX31_RS01395 0.45 -3.0
311,214 - EX31_RS01395 0.45 +0.5
311,279 + EX31_RS01395 0.49 +1.0
311,279 + EX31_RS01395 0.49 +0.4
311,294 + EX31_RS01395 0.50 -0.0
311,294 + EX31_RS01395 0.50 +0.4
311,295 - EX31_RS01395 0.50 +1.6
311,404 - EX31_RS01395 0.58 -0.4
311,409 + EX31_RS01395 0.58 -0.0
311,410 - EX31_RS01395 0.58 +0.7

Or see this region's nucleotide sequence