Strain Fitness in Rahnella sp. WP5 around EX31_RS01160

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01155 and EX31_RS01160 are separated by 76 nucleotidesEX31_RS01160 and EX31_RS01165 are separated by 190 nucleotides EX31_RS01155: EX31_RS01155 - AEC family transporter, at 252,704 to 253,648 _RS01155 EX31_RS01160: EX31_RS01160 - fumarate hydratase, at 253,725 to 255,371 _RS01160 EX31_RS01165: EX31_RS01165 - anion permease, at 255,562 to 257,073 _RS01165 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 252.843 kb on + strand, within EX31_RS01155at 252.844 kb on - strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.865 kb on - strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.282 kb on + strand, within EX31_RS01155at 253.283 kb on - strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.562 kb on + strandat 253.562 kb on + strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.634 kb on + strandat 253.635 kb on - strandat 253.859 kb on - strandat 253.931 kb on - strand, within EX31_RS01160at 253.946 kb on + strand, within EX31_RS01160at 253.980 kb on - strand, within EX31_RS01160at 254.111 kb on - strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.231 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.406 kb on - strand, within EX31_RS01160at 254.469 kb on + strand, within EX31_RS01160at 254.470 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.591 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.638 kb on - strand, within EX31_RS01160at 254.666 kb on + strand, within EX31_RS01160at 254.762 kb on + strand, within EX31_RS01160at 254.785 kb on + strand, within EX31_RS01160at 254.786 kb on - strand, within EX31_RS01160at 254.791 kb on + strand, within EX31_RS01160at 254.792 kb on - strand, within EX31_RS01160at 254.840 kb on - strand, within EX31_RS01160at 254.861 kb on - strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.908 kb on + strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.909 kb on - strand, within EX31_RS01160at 254.912 kb on + strand, within EX31_RS01160at 254.936 kb on - strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.965 kb on + strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 254.966 kb on - strand, within EX31_RS01160at 255.095 kb on + strand, within EX31_RS01160at 255.096 kb on - strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.118 kb on + strand, within EX31_RS01160at 255.119 kb on - strand, within EX31_RS01160at 255.119 kb on - strand, within EX31_RS01160at 255.307 kb on + strandat 255.307 kb on + strandat 255.308 kb on - strandat 255.352 kb on + strandat 255.352 kb on + strandat 255.352 kb on + strandat 255.353 kb on - strandat 255.353 kb on - strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.426 kb on + strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.427 kb on - strandat 255.451 kb on + strandat 255.451 kb on + strandat 255.453 kb on + strandat 255.464 kb on + strandat 255.465 kb on - strandat 255.465 kb on - strandat 255.481 kb on - strandat 255.601 kb on + strandat 255.666 kb on - strandat 255.680 kb on + strandat 255.680 kb on + strandat 255.681 kb on - strandat 255.704 kb on + strandat 255.705 kb on - strandat 255.757 kb on + strand, within EX31_RS01165at 255.758 kb on - strand, within EX31_RS01165at 255.802 kb on - strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.860 kb on + strand, within EX31_RS01165at 255.861 kb on - strand, within EX31_RS01165

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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252,843 + EX31_RS01155 0.15 +0.2
252,844 - EX31_RS01155 0.15 +1.3
252,864 + EX31_RS01155 0.17 +0.1
252,864 + EX31_RS01155 0.17 +1.1
252,864 + EX31_RS01155 0.17 +0.0
252,864 + EX31_RS01155 0.17 +0.6
252,864 + EX31_RS01155 0.17 +0.3
252,864 + EX31_RS01155 0.17 +1.0
252,865 - EX31_RS01155 0.17 +1.5
252,868 + EX31_RS01155 0.17 -0.9
252,868 + EX31_RS01155 0.17 +1.0
252,868 + EX31_RS01155 0.17 -0.0
252,935 + EX31_RS01155 0.24 -1.0
252,935 + EX31_RS01155 0.24 +0.5
253,102 + EX31_RS01155 0.42 +0.8
253,102 + EX31_RS01155 0.42 -0.8
253,282 + EX31_RS01155 0.61 +0.8
253,283 - EX31_RS01155 0.61 -1.4
253,399 + EX31_RS01155 0.74 -1.1
253,399 + EX31_RS01155 0.74 -0.0
253,562 + +1.0
253,562 + -1.4
253,563 - +0.4
253,563 - +0.4
253,563 - -0.4
253,612 - -0.8
253,612 - -0.5
253,634 + +2.0
253,635 - +0.4
253,859 - +1.8
253,931 - EX31_RS01160 0.13 +0.8
253,946 + EX31_RS01160 0.13 -0.0
253,980 - EX31_RS01160 0.15 -0.6
254,111 - EX31_RS01160 0.23 +1.5
254,113 + EX31_RS01160 0.24 +0.4
254,113 + EX31_RS01160 0.24 -1.2
254,113 + EX31_RS01160 0.24 -0.3
254,134 + EX31_RS01160 0.25 +1.2
254,134 + EX31_RS01160 0.25 +0.6
254,135 - EX31_RS01160 0.25 +0.1
254,135 - EX31_RS01160 0.25 +0.2
254,135 - EX31_RS01160 0.25 -1.1
254,231 + EX31_RS01160 0.31 -0.0
254,338 + EX31_RS01160 0.37 -0.4
254,338 + EX31_RS01160 0.37 -1.0
254,339 - EX31_RS01160 0.37 -0.4
254,339 - EX31_RS01160 0.37 +1.0
254,339 - EX31_RS01160 0.37 +0.6
254,405 + EX31_RS01160 0.41 -1.0
254,405 + EX31_RS01160 0.41 -0.4
254,405 + EX31_RS01160 0.41 +1.0
254,406 - EX31_RS01160 0.41 -0.6
254,469 + EX31_RS01160 0.45 +0.4
254,470 - EX31_RS01160 0.45 -0.4
254,473 - EX31_RS01160 0.45 +0.5
254,473 - EX31_RS01160 0.45 +2.0
254,591 + EX31_RS01160 0.53 +0.1
254,614 + EX31_RS01160 0.54 +0.5
254,614 + EX31_RS01160 0.54 -1.2
254,614 + EX31_RS01160 0.54 +0.8
254,614 + EX31_RS01160 0.54 +2.1
254,615 - EX31_RS01160 0.54 +1.5
254,615 - EX31_RS01160 0.54 +0.5
254,615 - EX31_RS01160 0.54 +2.0
254,638 - EX31_RS01160 0.55 +2.1
254,666 + EX31_RS01160 0.57 +1.3
254,762 + EX31_RS01160 0.63 +2.0
254,785 + EX31_RS01160 0.64 -0.5
254,786 - EX31_RS01160 0.64 +0.5
254,791 + EX31_RS01160 0.65 -0.6
254,792 - EX31_RS01160 0.65 -1.4
254,840 - EX31_RS01160 0.68 +2.0
254,861 - EX31_RS01160 0.69 -1.8
254,908 + EX31_RS01160 0.72 +0.5
254,908 + EX31_RS01160 0.72 +0.0
254,908 + EX31_RS01160 0.72 -2.5
254,908 + EX31_RS01160 0.72 -1.0
254,908 + EX31_RS01160 0.72 +1.5
254,909 - EX31_RS01160 0.72 +0.6
254,909 - EX31_RS01160 0.72 +0.5
254,909 - EX31_RS01160 0.72 -0.8
254,909 - EX31_RS01160 0.72 -0.6
254,909 - EX31_RS01160 0.72 +0.4
254,912 + EX31_RS01160 0.72 -0.0
254,936 - EX31_RS01160 0.74 +1.0
254,965 + EX31_RS01160 0.75 +0.2
254,965 + EX31_RS01160 0.75 -0.3
254,965 + EX31_RS01160 0.75 -1.5
254,965 + EX31_RS01160 0.75 -1.5
254,965 + EX31_RS01160 0.75 -1.4
254,965 + EX31_RS01160 0.75 +0.8
254,965 + EX31_RS01160 0.75 +0.2
254,966 - EX31_RS01160 0.75 +1.0
254,966 - EX31_RS01160 0.75 +0.1
254,966 - EX31_RS01160 0.75 +0.9
254,966 - EX31_RS01160 0.75 +0.3
254,966 - EX31_RS01160 0.75 +0.7
254,966 - EX31_RS01160 0.75 +1.0
254,966 - EX31_RS01160 0.75 -0.6
254,966 - EX31_RS01160 0.75 -0.5
255,095 + EX31_RS01160 0.83 +0.6
255,096 - EX31_RS01160 0.83 +1.0
255,118 + EX31_RS01160 0.85 +0.7
255,118 + EX31_RS01160 0.85 +0.6
255,118 + EX31_RS01160 0.85 +1.0
255,119 - EX31_RS01160 0.85 +0.5
255,119 - EX31_RS01160 0.85 +0.5
255,307 + -0.0
255,307 + -1.0
255,308 - +1.1
255,352 + -0.4
255,352 + +0.1
255,352 + +0.2
255,353 - -1.6
255,353 - +0.4
255,426 + -1.3
255,426 + +1.5
255,426 + -1.6
255,426 + +1.5
255,426 + +0.4
255,426 + +0.4
255,427 - -0.0
255,427 - -0.4
255,427 - +0.8
255,427 - -1.4
255,451 + -0.8
255,451 + +1.4
255,453 + -0.6
255,464 + +0.4
255,465 - +0.3
255,465 - -1.5
255,481 - -0.0
255,601 + +0.4
255,666 - +1.0
255,680 + +1.5
255,680 + -0.0
255,681 - +0.4
255,704 + +0.5
255,705 - +0.7
255,757 + EX31_RS01165 0.13 -1.4
255,758 - EX31_RS01165 0.13 -0.0
255,802 - EX31_RS01165 0.16 -0.4
255,860 + EX31_RS01165 0.20 +1.7
255,860 + EX31_RS01165 0.20 +0.1
255,860 + EX31_RS01165 0.20 -0.4
255,860 + EX31_RS01165 0.20 +0.4
255,861 - EX31_RS01165 0.20 -0.0

Or see this region's nucleotide sequence