Strain Fitness in Rahnella sp. WP5 around EX31_RS01150

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25895 and EX31_RS01145 are separated by 165 nucleotidesEX31_RS01145 and EX31_RS01150 are separated by 46 nucleotidesEX31_RS01150 and EX31_RS01155 are separated by 505 nucleotides EX31_RS25895: EX31_RS25895 - DinI-like family protein, at 249,420 to 249,527 _RS25895 EX31_RS01145: EX31_RS01145 - DUF3750 domain-containing protein, at 249,693 to 250,466 _RS01145 EX31_RS01150: EX31_RS01150 - oxaloacetate-decarboxylating malate dehydrogenase, at 250,513 to 252,198 _RS01150 EX31_RS01155: EX31_RS01155 - AEC family transporter, at 252,704 to 253,648 _RS01155 Position (kb) 250 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 249.563 kb on + strandat 249.564 kb on - strandat 249.564 kb on - strandat 249.564 kb on - strandat 249.611 kb on + strandat 249.611 kb on + strandat 249.612 kb on - strandat 249.612 kb on - strandat 249.651 kb on + strandat 249.688 kb on - strandat 249.703 kb on + strandat 249.703 kb on + strandat 249.712 kb on + strandat 249.712 kb on + strandat 249.736 kb on + strandat 249.736 kb on + strandat 249.870 kb on - strand, within EX31_RS01145at 249.882 kb on + strand, within EX31_RS01145at 249.882 kb on + strand, within EX31_RS01145at 249.939 kb on + strand, within EX31_RS01145at 250.003 kb on + strand, within EX31_RS01145at 250.003 kb on + strand, within EX31_RS01145at 250.003 kb on + strand, within EX31_RS01145at 250.003 kb on + strand, within EX31_RS01145at 250.004 kb on - strand, within EX31_RS01145at 250.004 kb on - strand, within EX31_RS01145at 250.006 kb on + strand, within EX31_RS01145at 250.006 kb on + strand, within EX31_RS01145at 250.006 kb on + strand, within EX31_RS01145at 250.017 kb on + strand, within EX31_RS01145at 250.058 kb on + strand, within EX31_RS01145at 250.058 kb on + strand, within EX31_RS01145at 250.060 kb on + strand, within EX31_RS01145at 250.061 kb on - strand, within EX31_RS01145at 250.094 kb on + strand, within EX31_RS01145at 250.095 kb on - strand, within EX31_RS01145at 250.095 kb on - strand, within EX31_RS01145at 250.143 kb on - strand, within EX31_RS01145at 250.143 kb on - strand, within EX31_RS01145at 250.146 kb on + strand, within EX31_RS01145at 250.146 kb on + strand, within EX31_RS01145at 250.147 kb on - strand, within EX31_RS01145at 250.147 kb on - strand, within EX31_RS01145at 250.147 kb on - strand, within EX31_RS01145at 250.147 kb on - strand, within EX31_RS01145at 250.175 kb on + strand, within EX31_RS01145at 250.175 kb on + strand, within EX31_RS01145at 250.176 kb on - strand, within EX31_RS01145at 250.176 kb on - strand, within EX31_RS01145at 250.176 kb on - strand, within EX31_RS01145at 250.442 kb on + strandat 250.530 kb on + strandat 250.530 kb on + strandat 250.533 kb on - strandat 250.817 kb on + strand, within EX31_RS01150at 250.817 kb on + strand, within EX31_RS01150at 250.817 kb on + strand, within EX31_RS01150at 250.828 kb on - strand, within EX31_RS01150at 250.828 kb on - strand, within EX31_RS01150at 251.451 kb on + strand, within EX31_RS01150at 251.451 kb on + strand, within EX31_RS01150at 251.452 kb on - strand, within EX31_RS01150at 251.452 kb on - strand, within EX31_RS01150at 251.452 kb on - strand, within EX31_RS01150at 251.527 kb on - strand, within EX31_RS01150at 251.527 kb on - strand, within EX31_RS01150at 251.527 kb on - strand, within EX31_RS01150at 251.527 kb on - strand, within EX31_RS01150at 251.543 kb on + strand, within EX31_RS01150at 251.675 kb on + strand, within EX31_RS01150at 251.675 kb on + strand, within EX31_RS01150at 251.676 kb on - strand, within EX31_RS01150at 251.809 kb on - strand, within EX31_RS01150at 251.855 kb on + strand, within EX31_RS01150at 251.856 kb on - strand, within EX31_RS01150at 251.856 kb on - strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.858 kb on - strand, within EX31_RS01150at 251.900 kb on + strand, within EX31_RS01150at 251.901 kb on - strand, within EX31_RS01150at 252.054 kb on + strandat 252.055 kb on - strandat 252.154 kb on + strandat 252.177 kb on - strandat 252.203 kb on - strandat 252.843 kb on + strand, within EX31_RS01155at 252.844 kb on - strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.865 kb on - strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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249,563 + -0.5
249,564 - -0.6
249,564 - -1.4
249,564 - +2.0
249,611 + -1.5
249,611 + -3.6
249,612 - +1.4
249,612 - +0.1
249,651 + -1.0
249,688 - -0.4
249,703 + +1.4
249,703 + -1.6
249,712 + -0.6
249,712 + -3.0
249,736 + +0.3
249,736 + -0.0
249,870 - EX31_RS01145 0.23 +0.5
249,882 + EX31_RS01145 0.24 -1.0
249,882 + EX31_RS01145 0.24 +0.5
249,939 + EX31_RS01145 0.32 +0.4
250,003 + EX31_RS01145 0.40 -1.2
250,003 + EX31_RS01145 0.40 -0.7
250,003 + EX31_RS01145 0.40 -0.9
250,003 + EX31_RS01145 0.40 -0.0
250,004 - EX31_RS01145 0.40 -1.8
250,004 - EX31_RS01145 0.40 +1.0
250,006 + EX31_RS01145 0.40 +0.2
250,006 + EX31_RS01145 0.40 -1.4
250,006 + EX31_RS01145 0.40 -0.6
250,017 + EX31_RS01145 0.42 -0.6
250,058 + EX31_RS01145 0.47 +0.1
250,058 + EX31_RS01145 0.47 +1.0
250,060 + EX31_RS01145 0.47 +1.0
250,061 - EX31_RS01145 0.48 -0.2
250,094 + EX31_RS01145 0.52 +1.3
250,095 - EX31_RS01145 0.52 +3.0
250,095 - EX31_RS01145 0.52 +2.4
250,143 - EX31_RS01145 0.58 -0.0
250,143 - EX31_RS01145 0.58 -0.5
250,146 + EX31_RS01145 0.59 -0.0
250,146 + EX31_RS01145 0.59 -1.2
250,147 - EX31_RS01145 0.59 -1.0
250,147 - EX31_RS01145 0.59 -0.0
250,147 - EX31_RS01145 0.59 +1.0
250,147 - EX31_RS01145 0.59 +0.4
250,175 + EX31_RS01145 0.62 -1.8
250,175 + EX31_RS01145 0.62 +0.2
250,176 - EX31_RS01145 0.62 +1.2
250,176 - EX31_RS01145 0.62 -1.8
250,176 - EX31_RS01145 0.62 -1.6
250,442 + -0.6
250,530 + +1.7
250,530 + +2.3
250,533 - -0.3
250,817 + EX31_RS01150 0.18 +2.3
250,817 + EX31_RS01150 0.18 +1.7
250,817 + EX31_RS01150 0.18 -1.2
250,828 - EX31_RS01150 0.19 +1.0
250,828 - EX31_RS01150 0.19 +0.2
251,451 + EX31_RS01150 0.56 -1.6
251,451 + EX31_RS01150 0.56 +2.5
251,452 - EX31_RS01150 0.56 +0.5
251,452 - EX31_RS01150 0.56 +0.3
251,452 - EX31_RS01150 0.56 +0.7
251,527 - EX31_RS01150 0.60 -0.5
251,527 - EX31_RS01150 0.60 -0.0
251,527 - EX31_RS01150 0.60 +1.0
251,527 - EX31_RS01150 0.60 -0.6
251,543 + EX31_RS01150 0.61 +0.2
251,675 + EX31_RS01150 0.69 +1.4
251,675 + EX31_RS01150 0.69 +2.0
251,676 - EX31_RS01150 0.69 +2.0
251,809 - EX31_RS01150 0.77 +0.3
251,855 + EX31_RS01150 0.80 -0.6
251,856 - EX31_RS01150 0.80 +0.2
251,856 - EX31_RS01150 0.80 -0.6
251,857 + EX31_RS01150 0.80 -1.6
251,857 + EX31_RS01150 0.80 +1.0
251,857 + EX31_RS01150 0.80 +0.6
251,857 + EX31_RS01150 0.80 -1.4
251,858 - EX31_RS01150 0.80 -0.6
251,900 + EX31_RS01150 0.82 -0.6
251,901 - EX31_RS01150 0.82 +2.3
252,054 + -0.6
252,055 - -1.1
252,154 + -0.3
252,177 - -0.6
252,203 - +1.1
252,843 + EX31_RS01155 0.15 +0.2
252,844 - EX31_RS01155 0.15 +1.3
252,864 + EX31_RS01155 0.17 +0.1
252,864 + EX31_RS01155 0.17 +1.1
252,864 + EX31_RS01155 0.17 +0.0
252,864 + EX31_RS01155 0.17 +0.6
252,864 + EX31_RS01155 0.17 +0.3
252,864 + EX31_RS01155 0.17 +1.0
252,865 - EX31_RS01155 0.17 +1.5
252,868 + EX31_RS01155 0.17 -0.9
252,868 + EX31_RS01155 0.17 +1.0
252,868 + EX31_RS01155 0.17 -0.0
252,935 + EX31_RS01155 0.24 -1.0
252,935 + EX31_RS01155 0.24 +0.5
253,102 + EX31_RS01155 0.42 +0.8
253,102 + EX31_RS01155 0.42 -0.8

Or see this region's nucleotide sequence