Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00170 and EX31_RS25880 are separated by 143 nucleotides EX31_RS25880 and EX31_RS00175 are separated by 278 nucleotides EX31_RS00175 and EX31_RS00180 are separated by 132 nucleotides
EX31_RS00170: EX31_RS00170 - DUF1471 domain-containing protein, at 35,737 to 36,042
_RS00170
EX31_RS25880: EX31_RS25880 - hypothetical protein, at 36,186 to 36,407
_RS25880
EX31_RS00175: EX31_RS00175 - membrane protein, at 36,686 to 37,963
_RS00175
EX31_RS00180: EX31_RS00180 - aldehyde dehydrogenase family protein, at 38,096 to 39,481
_RS00180
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 35.712 kb on - strand at 35.712 kb on - strand at 35.744 kb on + strand at 35.769 kb on - strand, within EX31_RS00170 at 35.769 kb on - strand, within EX31_RS00170 at 35.769 kb on - strand, within EX31_RS00170 at 35.769 kb on - strand, within EX31_RS00170 at 36.017 kb on - strand at 36.126 kb on + strand at 36.127 kb on - strand at 36.165 kb on - strand at 36.219 kb on + strand, within EX31_RS25880 at 36.266 kb on - strand, within EX31_RS25880 at 36.266 kb on - strand, within EX31_RS25880 at 36.266 kb on - strand, within EX31_RS25880 at 36.266 kb on - strand, within EX31_RS25880 at 36.266 kb on - strand, within EX31_RS25880 at 36.315 kb on + strand, within EX31_RS25880 at 36.315 kb on + strand, within EX31_RS25880 at 36.372 kb on - strand, within EX31_RS25880 at 36.372 kb on - strand, within EX31_RS25880 at 36.372 kb on - strand, within EX31_RS25880 at 36.372 kb on - strand, within EX31_RS25880 at 36.372 kb on - strand, within EX31_RS25880 at 36.437 kb on + strand at 36.437 kb on + strand at 36.437 kb on + strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.438 kb on - strand at 36.459 kb on - strand at 36.481 kb on - strand at 36.481 kb on - strand at 36.481 kb on - strand at 36.662 kb on - strand at 36.663 kb on + strand at 36.724 kb on + strand at 36.757 kb on - strand at 36.757 kb on - strand at 36.774 kb on + strand at 36.818 kb on - strand, within EX31_RS00175 at 36.892 kb on + strand, within EX31_RS00175 at 36.986 kb on - strand, within EX31_RS00175 at 36.995 kb on - strand, within EX31_RS00175 at 36.995 kb on - strand, within EX31_RS00175 at 36.997 kb on + strand, within EX31_RS00175 at 37.030 kb on + strand, within EX31_RS00175 at 37.061 kb on - strand, within EX31_RS00175 at 37.102 kb on + strand, within EX31_RS00175 at 37.102 kb on + strand, within EX31_RS00175 at 37.102 kb on + strand, within EX31_RS00175 at 37.102 kb on + strand, within EX31_RS00175 at 37.103 kb on - strand, within EX31_RS00175 at 37.103 kb on - strand, within EX31_RS00175 at 37.103 kb on - strand, within EX31_RS00175 at 37.103 kb on - strand, within EX31_RS00175 at 37.106 kb on + strand, within EX31_RS00175 at 37.106 kb on + strand, within EX31_RS00175 at 37.107 kb on - strand, within EX31_RS00175 at 37.107 kb on - strand, within EX31_RS00175 at 37.107 kb on - strand, within EX31_RS00175 at 37.107 kb on - strand, within EX31_RS00175 at 37.110 kb on - strand, within EX31_RS00175 at 37.120 kb on + strand, within EX31_RS00175 at 37.121 kb on - strand, within EX31_RS00175 at 37.233 kb on + strand, within EX31_RS00175 at 37.233 kb on + strand, within EX31_RS00175 at 37.241 kb on + strand, within EX31_RS00175 at 37.241 kb on + strand, within EX31_RS00175 at 37.241 kb on + strand, within EX31_RS00175 at 37.242 kb on - strand, within EX31_RS00175 at 37.243 kb on + strand, within EX31_RS00175 at 37.243 kb on + strand, within EX31_RS00175 at 37.243 kb on + strand, within EX31_RS00175 at 37.244 kb on - strand, within EX31_RS00175 at 37.256 kb on + strand, within EX31_RS00175 at 37.256 kb on + strand, within EX31_RS00175 at 37.257 kb on - strand, within EX31_RS00175 at 37.258 kb on + strand, within EX31_RS00175 at 37.280 kb on - strand, within EX31_RS00175 at 37.356 kb on + strand, within EX31_RS00175 at 37.357 kb on - strand, within EX31_RS00175 at 37.380 kb on + strand, within EX31_RS00175 at 37.380 kb on + strand, within EX31_RS00175 at 37.390 kb on - strand, within EX31_RS00175 at 37.390 kb on - strand, within EX31_RS00175 at 37.433 kb on + strand, within EX31_RS00175 at 37.433 kb on + strand, within EX31_RS00175 at 37.459 kb on + strand, within EX31_RS00175 at 37.471 kb on + strand, within EX31_RS00175 at 37.534 kb on - strand, within EX31_RS00175 at 37.551 kb on + strand, within EX31_RS00175 at 37.627 kb on + strand, within EX31_RS00175 at 37.687 kb on + strand, within EX31_RS00175 at 37.747 kb on + strand, within EX31_RS00175 at 37.820 kb on - strand, within EX31_RS00175 at 37.836 kb on + strand at 37.836 kb on + strand at 37.837 kb on - strand at 37.837 kb on - strand at 37.842 kb on + strand at 37.843 kb on - strand at 37.843 kb on - strand at 37.846 kb on - strand at 37.846 kb on - strand at 37.957 kb on + strand at 37.957 kb on + strand at 38.098 kb on - strand at 38.101 kb on + strand at 38.101 kb on + strand at 38.102 kb on - strand at 38.102 kb on - strand at 38.231 kb on - strand at 38.231 kb on - strand at 38.231 kb on - strand at 38.231 kb on - strand at 38.234 kb on + strand at 38.235 kb on - strand, within EX31_RS00180 at 38.235 kb on - strand, within EX31_RS00180 at 38.235 kb on - strand, within EX31_RS00180 at 38.235 kb on - strand, within EX31_RS00180 at 38.292 kb on + strand, within EX31_RS00180 at 38.387 kb on + strand, within EX31_RS00180 at 38.388 kb on - strand, within EX31_RS00180 at 38.388 kb on - strand, within EX31_RS00180 at 38.388 kb on - strand, within EX31_RS00180 at 38.435 kb on - strand, within EX31_RS00180 at 38.445 kb on + strand, within EX31_RS00180 at 38.445 kb on + strand, within EX31_RS00180 at 38.446 kb on - strand, within EX31_RS00180 at 38.449 kb on - strand, within EX31_RS00180 at 38.568 kb on + strand, within EX31_RS00180 at 38.568 kb on + strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.569 kb on - strand, within EX31_RS00180 at 38.665 kb on + strand, within EX31_RS00180 at 38.666 kb on - strand, within EX31_RS00180 at 38.666 kb on - strand, within EX31_RS00180 at 38.666 kb on - strand, within EX31_RS00180 at 38.666 kb on - strand, within EX31_RS00180 at 38.696 kb on - strand, within EX31_RS00180 at 38.761 kb on + strand, within EX31_RS00180 at 38.761 kb on + strand, within EX31_RS00180 at 38.762 kb on - strand, within EX31_RS00180 at 38.762 kb on - strand, within EX31_RS00180 at 38.917 kb on + strand, within EX31_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 35,712 - -1.0 35,712 - +2.0 35,744 + +0.4 35,769 - EX31_RS00170 0.10 -0.0 35,769 - EX31_RS00170 0.10 +0.3 35,769 - EX31_RS00170 0.10 -1.7 35,769 - EX31_RS00170 0.10 +0.8 36,017 - -1.3 36,126 + +0.4 36,127 - -1.3 36,165 - +0.4 36,219 + EX31_RS25880 0.15 +1.5 36,266 - EX31_RS25880 0.36 +0.6 36,266 - EX31_RS25880 0.36 +0.3 36,266 - EX31_RS25880 0.36 +0.1 36,266 - EX31_RS25880 0.36 +1.0 36,266 - EX31_RS25880 0.36 +1.1 36,315 + EX31_RS25880 0.58 +2.6 36,315 + EX31_RS25880 0.58 +1.2 36,372 - EX31_RS25880 0.84 +1.7 36,372 - EX31_RS25880 0.84 +0.4 36,372 - EX31_RS25880 0.84 -0.3 36,372 - EX31_RS25880 0.84 -0.0 36,372 - EX31_RS25880 0.84 +1.2 36,437 + +1.0 36,437 + -1.1 36,437 + +0.3 36,438 - +1.2 36,438 - +0.2 36,438 - +0.3 36,438 - -1.5 36,438 - -0.6 36,438 - -0.0 36,438 - +0.6 36,438 - +0.7 36,459 - +0.4 36,481 - -0.6 36,481 - -0.8 36,481 - +0.6 36,662 - -0.0 36,663 + +0.7 36,724 + -0.7 36,757 - -0.0 36,757 - +3.0 36,774 + +1.0 36,818 - EX31_RS00175 0.10 -1.0 36,892 + EX31_RS00175 0.16 +1.0 36,986 - EX31_RS00175 0.23 -1.2 36,995 - EX31_RS00175 0.24 -0.0 36,995 - EX31_RS00175 0.24 -1.3 36,997 + EX31_RS00175 0.24 -0.0 37,030 + EX31_RS00175 0.27 -0.6 37,061 - EX31_RS00175 0.29 -0.5 37,102 + EX31_RS00175 0.33 +1.0 37,102 + EX31_RS00175 0.33 -1.8 37,102 + EX31_RS00175 0.33 +1.0 37,102 + EX31_RS00175 0.33 +0.5 37,103 - EX31_RS00175 0.33 +3.2 37,103 - EX31_RS00175 0.33 +2.3 37,103 - EX31_RS00175 0.33 +1.4 37,103 - EX31_RS00175 0.33 -1.6 37,106 + EX31_RS00175 0.33 +0.4 37,106 + EX31_RS00175 0.33 -0.7 37,107 - EX31_RS00175 0.33 +0.2 37,107 - EX31_RS00175 0.33 +0.4 37,107 - EX31_RS00175 0.33 +1.6 37,107 - EX31_RS00175 0.33 -0.0 37,110 - EX31_RS00175 0.33 -0.6 37,120 + EX31_RS00175 0.34 +0.8 37,121 - EX31_RS00175 0.34 -0.2 37,233 + EX31_RS00175 0.43 +0.7 37,233 + EX31_RS00175 0.43 +0.7 37,241 + EX31_RS00175 0.43 -0.4 37,241 + EX31_RS00175 0.43 -0.6 37,241 + EX31_RS00175 0.43 -0.3 37,242 - EX31_RS00175 0.44 -0.0 37,243 + EX31_RS00175 0.44 -2.5 37,243 + EX31_RS00175 0.44 -0.5 37,243 + EX31_RS00175 0.44 +0.6 37,244 - EX31_RS00175 0.44 -0.9 37,256 + EX31_RS00175 0.45 +1.6 37,256 + EX31_RS00175 0.45 -0.0 37,257 - EX31_RS00175 0.45 -0.9 37,258 + EX31_RS00175 0.45 +2.0 37,280 - EX31_RS00175 0.46 -1.0 37,356 + EX31_RS00175 0.52 -2.8 37,357 - EX31_RS00175 0.53 +0.6 37,380 + EX31_RS00175 0.54 +2.3 37,380 + EX31_RS00175 0.54 -0.3 37,390 - EX31_RS00175 0.55 +1.1 37,390 - EX31_RS00175 0.55 +0.7 37,433 + EX31_RS00175 0.58 -0.1 37,433 + EX31_RS00175 0.58 +0.8 37,459 + EX31_RS00175 0.60 -2.8 37,471 + EX31_RS00175 0.61 +1.0 37,534 - EX31_RS00175 0.66 -0.0 37,551 + EX31_RS00175 0.68 -0.6 37,627 + EX31_RS00175 0.74 -1.1 37,687 + EX31_RS00175 0.78 +0.4 37,747 + EX31_RS00175 0.83 +0.3 37,820 - EX31_RS00175 0.89 +0.7 37,836 + +0.6 37,836 + +1.0 37,837 - -0.2 37,837 - +1.5 37,842 + +1.0 37,843 - -2.2 37,843 - -0.9 37,846 - +1.4 37,846 - -0.2 37,957 + -0.7 37,957 + -0.5 38,098 - -0.3 38,101 + +0.4 38,101 + +0.6 38,102 - +0.1 38,102 - -0.6 38,231 - +1.0 38,231 - -1.8 38,231 - -1.3 38,231 - -2.3 38,234 + +2.0 38,235 - EX31_RS00180 0.10 -1.2 38,235 - EX31_RS00180 0.10 -0.0 38,235 - EX31_RS00180 0.10 +1.4 38,235 - EX31_RS00180 0.10 -0.4 38,292 + EX31_RS00180 0.14 -0.2 38,387 + EX31_RS00180 0.21 +0.7 38,388 - EX31_RS00180 0.21 -2.6 38,388 - EX31_RS00180 0.21 -0.0 38,388 - EX31_RS00180 0.21 -0.9 38,435 - EX31_RS00180 0.24 +0.3 38,445 + EX31_RS00180 0.25 -0.1 38,445 + EX31_RS00180 0.25 +1.0 38,446 - EX31_RS00180 0.25 +1.0 38,449 - EX31_RS00180 0.25 -1.0 38,568 + EX31_RS00180 0.34 -0.9 38,568 + EX31_RS00180 0.34 +1.0 38,569 - EX31_RS00180 0.34 +0.5 38,569 - EX31_RS00180 0.34 +1.2 38,569 - EX31_RS00180 0.34 +2.6 38,569 - EX31_RS00180 0.34 -1.2 38,569 - EX31_RS00180 0.34 -0.0 38,569 - EX31_RS00180 0.34 +1.0 38,569 - EX31_RS00180 0.34 +1.0 38,569 - EX31_RS00180 0.34 +0.2 38,569 - EX31_RS00180 0.34 +0.3 38,665 + EX31_RS00180 0.41 +0.7 38,666 - EX31_RS00180 0.41 +2.0 38,666 - EX31_RS00180 0.41 +0.6 38,666 - EX31_RS00180 0.41 -0.2 38,666 - EX31_RS00180 0.41 -0.2 38,696 - EX31_RS00180 0.43 +0.1 38,761 + EX31_RS00180 0.48 -1.1 38,761 + EX31_RS00180 0.48 +0.6 38,762 - EX31_RS00180 0.48 -1.3 38,762 - EX31_RS00180 0.48 -1.0 38,917 + EX31_RS00180 0.59 -0.2
Or see this region's nucleotide sequence