Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15935

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS15930 and CA265_RS15935 are separated by 225 nucleotidesCA265_RS15935 and CA265_RS15940 overlap by 1 nucleotidesCA265_RS15940 and CA265_RS15945 are separated by 8 nucleotides CA265_RS15930: CA265_RS15930 - uroporphyrinogen decarboxylase, at 4,000,553 to 4,001,578 _RS15930 CA265_RS15935: CA265_RS15935 - hypothetical protein, at 4,001,804 to 4,002,319 _RS15935 CA265_RS15940: CA265_RS15940 - DNA-binding response regulator, at 4,002,319 to 4,003,023 _RS15940 CA265_RS15945: CA265_RS15945 - two-component sensor histidine kinase, at 4,003,032 to 4,003,898 _RS15945 Position (kb) 4001 4002 4003Strain fitness (log2 ratio) -2 -1 0 1at 4001.635 kb on - strandat 4001.635 kb on - strandat 4001.730 kb on - strandat 4001.730 kb on - strandat 4001.889 kb on + strand, within CA265_RS15935at 4001.890 kb on - strand, within CA265_RS15935at 4001.908 kb on + strand, within CA265_RS15935at 4001.930 kb on - strand, within CA265_RS15935at 4001.945 kb on + strand, within CA265_RS15935at 4001.953 kb on - strand, within CA265_RS15935at 4002.055 kb on + strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.058 kb on - strand, within CA265_RS15935at 4002.100 kb on + strand, within CA265_RS15935at 4002.149 kb on - strand, within CA265_RS15935at 4002.298 kb on - strandat 4002.302 kb on - strandat 4003.038 kb on - strandat 4003.056 kb on - strandat 4003.195 kb on - strand, within CA265_RS15945at 4003.246 kb on - strand, within CA265_RS15945at 4003.273 kb on - strand, within CA265_RS15945at 4003.285 kb on - strand, within CA265_RS15945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
4,001,635 - -0.2
4,001,635 - -0.0
4,001,730 - -0.2
4,001,730 - -0.3
4,001,889 + CA265_RS15935 0.16 +0.2
4,001,890 - CA265_RS15935 0.17 -0.4
4,001,908 + CA265_RS15935 0.20 +0.3
4,001,930 - CA265_RS15935 0.24 +0.5
4,001,945 + CA265_RS15935 0.27 +0.7
4,001,953 - CA265_RS15935 0.29 +0.4
4,002,055 + CA265_RS15935 0.49 -0.5
4,002,056 - CA265_RS15935 0.49 -0.2
4,002,056 - CA265_RS15935 0.49 -0.6
4,002,056 - CA265_RS15935 0.49 -1.1
4,002,056 - CA265_RS15935 0.49 -1.3
4,002,058 - CA265_RS15935 0.49 -0.0
4,002,100 + CA265_RS15935 0.57 +0.1
4,002,149 - CA265_RS15935 0.67 +1.1
4,002,298 - -0.7
4,002,302 - +0.1
4,003,038 - -2.1
4,003,056 - -0.9
4,003,195 - CA265_RS15945 0.19 -2.4
4,003,246 - CA265_RS15945 0.25 -1.5
4,003,273 - CA265_RS15945 0.28 -0.8
4,003,285 - CA265_RS15945 0.29 -0.8

Or see this region's nucleotide sequence