Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27185

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27180 and AO356_27185 overlap by 4 nucleotidesAO356_27185 and AO356_27190 are separated by 23 nucleotidesAO356_27190 and AO356_27195 overlap by 4 nucleotides AO356_27180: AO356_27180 - hypothetical protein, at 6,194,754 to 6,195,989 _27180 AO356_27185: AO356_27185 - hypothetical protein, at 6,195,986 to 6,197,503 _27185 AO356_27190: AO356_27190 - hypothetical protein, at 6,197,527 to 6,198,498 _27190 AO356_27195: AO356_27195 - hypothetical protein, at 6,198,495 to 6,199,598 _27195 Position (kb) 6195 6196 6197 6198Strain fitness (log2 ratio) -3 -2 -1 0 1at 6195.076 kb on + strand, within AO356_27180at 6195.077 kb on - strand, within AO356_27180at 6195.437 kb on - strand, within AO356_27180at 6195.793 kb on + strand, within AO356_27180at 6195.989 kb on + strandat 6195.990 kb on - strandat 6196.089 kb on + strandat 6196.153 kb on - strand, within AO356_27185at 6196.414 kb on + strand, within AO356_27185at 6196.414 kb on + strand, within AO356_27185at 6196.604 kb on - strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.652 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.934 kb on + strand, within AO356_27185at 6196.935 kb on - strand, within AO356_27185at 6196.951 kb on - strand, within AO356_27185at 6196.979 kb on - strand, within AO356_27185at 6197.036 kb on - strand, within AO356_27185at 6197.204 kb on - strand, within AO356_27185at 6197.566 kb on - strandat 6197.566 kb on - strandat 6197.597 kb on - strandat 6197.597 kb on - strandat 6197.597 kb on - strandat 6197.625 kb on - strand, within AO356_27190at 6197.678 kb on - strand, within AO356_27190at 6197.788 kb on + strand, within AO356_27190at 6197.788 kb on + strand, within AO356_27190at 6197.799 kb on - strand, within AO356_27190at 6197.799 kb on - strand, within AO356_27190at 6197.809 kb on - strand, within AO356_27190at 6197.823 kb on + strand, within AO356_27190at 6197.823 kb on + strand, within AO356_27190at 6197.824 kb on - strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6198.042 kb on + strand, within AO356_27190at 6198.079 kb on - strand, within AO356_27190at 6198.079 kb on - strand, within AO356_27190at 6198.080 kb on + strand, within AO356_27190at 6198.080 kb on + strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.108 kb on - strand, within AO356_27190at 6198.163 kb on + strand, within AO356_27190at 6198.243 kb on + strand, within AO356_27190at 6198.244 kb on - strand, within AO356_27190at 6198.291 kb on - strand, within AO356_27190at 6198.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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6,195,076 + AO356_27180 0.26 -1.6
6,195,077 - AO356_27180 0.26 -3.2
6,195,437 - AO356_27180 0.55 -0.1
6,195,793 + AO356_27180 0.84 -1.4
6,195,989 + -1.0
6,195,990 - -1.1
6,196,089 + -0.4
6,196,153 - AO356_27185 0.11 +0.4
6,196,414 + AO356_27185 0.28 -2.4
6,196,414 + AO356_27185 0.28 -1.8
6,196,604 - AO356_27185 0.41 +0.5
6,196,651 + AO356_27185 0.44 -1.6
6,196,651 + AO356_27185 0.44 -3.0
6,196,651 + AO356_27185 0.44 -1.0
6,196,652 - AO356_27185 0.44 +0.2
6,196,700 - AO356_27185 0.47 +0.1
6,196,700 - AO356_27185 0.47 -0.1
6,196,807 - AO356_27185 0.54 +1.0
6,196,807 - AO356_27185 0.54 +0.1
6,196,916 - AO356_27185 0.61 +0.1
6,196,916 - AO356_27185 0.61 +0.0
6,196,934 + AO356_27185 0.62 -3.0
6,196,935 - AO356_27185 0.63 +0.4
6,196,951 - AO356_27185 0.64 -0.3
6,196,979 - AO356_27185 0.65 +1.1
6,197,036 - AO356_27185 0.69 -0.2
6,197,204 - AO356_27185 0.80 +0.4
6,197,566 - +0.2
6,197,566 - +0.7
6,197,597 - -1.3
6,197,597 - +0.5
6,197,597 - -0.5
6,197,625 - AO356_27190 0.10 +0.1
6,197,678 - AO356_27190 0.16 +0.0
6,197,788 + AO356_27190 0.27 -0.0
6,197,788 + AO356_27190 0.27 +1.4
6,197,799 - AO356_27190 0.28 +1.0
6,197,799 - AO356_27190 0.28 -0.1
6,197,809 - AO356_27190 0.29 +0.0
6,197,823 + AO356_27190 0.30 -0.5
6,197,823 + AO356_27190 0.30 +0.0
6,197,824 - AO356_27190 0.31 +0.1
6,197,825 + AO356_27190 0.31 -1.0
6,197,825 + AO356_27190 0.31 +1.4
6,197,825 + AO356_27190 0.31 -1.4
6,197,825 + AO356_27190 0.31 -0.8
6,198,042 + AO356_27190 0.53 +1.4
6,198,079 - AO356_27190 0.57 -0.6
6,198,079 - AO356_27190 0.57 -1.3
6,198,080 + AO356_27190 0.57 -0.9
6,198,080 + AO356_27190 0.57 -1.1
6,198,081 - AO356_27190 0.57 -0.4
6,198,081 - AO356_27190 0.57 -0.7
6,198,081 - AO356_27190 0.57 +0.2
6,198,081 - AO356_27190 0.57 -1.0
6,198,081 - AO356_27190 0.57 +0.2
6,198,108 - AO356_27190 0.60 -0.5
6,198,163 + AO356_27190 0.65 +0.4
6,198,243 + AO356_27190 0.74 -1.0
6,198,244 - AO356_27190 0.74 -0.5
6,198,291 - AO356_27190 0.79 +0.5
6,198,457 - +0.4

Or see this region's nucleotide sequence