Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07785

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07780 and AO356_07785 are separated by 1 nucleotidesAO356_07785 and AO356_07790 are separated by 27 nucleotides AO356_07780: AO356_07780 - D-aminoacylase, at 1,738,518 to 1,739,990 _07780 AO356_07785: AO356_07785 - RpiR family transcriptional regulator, at 1,739,992 to 1,740,852 _07785 AO356_07790: AO356_07790 - permease DsdX, at 1,740,880 to 1,742,229 _07790 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -1 0 1at 1739.231 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.353 kb on + strand, within AO356_07780at 1739.354 kb on - strand, within AO356_07780at 1739.428 kb on + strand, within AO356_07780at 1739.429 kb on - strand, within AO356_07780at 1739.537 kb on + strand, within AO356_07780at 1739.537 kb on + strand, within AO356_07780at 1739.537 kb on + strand, within AO356_07780at 1739.537 kb on + strand, within AO356_07780at 1739.538 kb on - strand, within AO356_07780at 1739.538 kb on - strand, within AO356_07780at 1739.538 kb on - strand, within AO356_07780at 1739.594 kb on + strand, within AO356_07780at 1739.972 kb on + strandat 1739.973 kb on - strandat 1739.973 kb on - strandat 1739.984 kb on - strandat 1739.984 kb on - strandat 1739.984 kb on - strandat 1740.155 kb on + strand, within AO356_07785at 1740.155 kb on + strand, within AO356_07785at 1740.156 kb on - strand, within AO356_07785at 1740.156 kb on - strand, within AO356_07785at 1740.156 kb on - strand, within AO356_07785at 1740.575 kb on + strand, within AO356_07785at 1740.575 kb on + strand, within AO356_07785at 1740.575 kb on + strand, within AO356_07785at 1740.575 kb on + strand, within AO356_07785at 1740.839 kb on + strandat 1740.978 kb on + strandat 1740.979 kb on - strandat 1740.987 kb on - strandat 1741.631 kb on + strand, within AO356_07790at 1741.631 kb on + strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.632 kb on - strand, within AO356_07790at 1741.679 kb on + strand, within AO356_07790at 1741.679 kb on + strand, within AO356_07790at 1741.680 kb on - strand, within AO356_07790

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,739,231 + AO356_07780 0.48 +0.6
1,739,353 + AO356_07780 0.57 -0.4
1,739,353 + AO356_07780 0.57 -1.6
1,739,353 + AO356_07780 0.57 +0.6
1,739,354 - AO356_07780 0.57 -0.4
1,739,428 + AO356_07780 0.62 +0.6
1,739,429 - AO356_07780 0.62 +0.3
1,739,537 + AO356_07780 0.69 +0.5
1,739,537 + AO356_07780 0.69 -0.5
1,739,537 + AO356_07780 0.69 -0.1
1,739,537 + AO356_07780 0.69 -0.1
1,739,538 - AO356_07780 0.69 +0.3
1,739,538 - AO356_07780 0.69 +1.0
1,739,538 - AO356_07780 0.69 +0.2
1,739,594 + AO356_07780 0.73 +0.9
1,739,972 + +0.7
1,739,973 - -0.4
1,739,973 - +0.1
1,739,984 - -0.3
1,739,984 - -0.0
1,739,984 - -0.3
1,740,155 + AO356_07785 0.19 +0.8
1,740,155 + AO356_07785 0.19 +0.4
1,740,156 - AO356_07785 0.19 +1.2
1,740,156 - AO356_07785 0.19 +0.1
1,740,156 - AO356_07785 0.19 +0.4
1,740,575 + AO356_07785 0.68 -0.4
1,740,575 + AO356_07785 0.68 -0.7
1,740,575 + AO356_07785 0.68 +1.4
1,740,575 + AO356_07785 0.68 +1.2
1,740,839 + +0.2
1,740,978 + +0.5
1,740,979 - -1.3
1,740,987 - +0.2
1,741,631 + AO356_07790 0.56 +1.0
1,741,631 + AO356_07790 0.56 -0.7
1,741,632 - AO356_07790 0.56 -0.8
1,741,632 - AO356_07790 0.56 +0.4
1,741,632 - AO356_07790 0.56 -0.8
1,741,679 + AO356_07790 0.59 +0.3
1,741,679 + AO356_07790 0.59 +0.3
1,741,680 - AO356_07790 0.59 +0.1

Or see this region's nucleotide sequence