Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01755

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01745 and AO356_01750 are separated by 107 nucleotidesAO356_01750 and AO356_01755 are separated by 93 nucleotidesAO356_01755 and AO356_01760 are separated by 422 nucleotidesAO356_01760 and AO356_01765 are separated by 58 nucleotidesAO356_01765 and AO356_01770 are separated by 41 nucleotides AO356_01745: AO356_01745 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 394,376 to 395,659 _01745 AO356_01750: AO356_01750 - ATP-dependent Clp protease proteolytic subunit, at 395,767 to 396,408 _01750 AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812 _01755 AO356_01760: AO356_01760 - tRNA-Leu, at 398,235 to 398,319 _01760 AO356_01765: AO356_01765 - tRNA-His, at 398,378 to 398,453 _01765 AO356_01770: AO356_01770 - tRNA-Arg, at 398,495 to 398,571 _01770 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1 2at 395.616 kb on + strandat 395.617 kb on - strandat 395.617 kb on - strandat 395.768 kb on + strandat 395.768 kb on + strandat 395.769 kb on - strandat 396.129 kb on - strand, within AO356_01750at 396.173 kb on + strand, within AO356_01750at 396.173 kb on + strand, within AO356_01750at 396.173 kb on + strand, within AO356_01750at 396.245 kb on + strand, within AO356_01750at 396.246 kb on - strand, within AO356_01750at 396.246 kb on - strand, within AO356_01750at 396.299 kb on + strand, within AO356_01750at 396.299 kb on + strand, within AO356_01750at 396.299 kb on + strand, within AO356_01750at 396.300 kb on - strand, within AO356_01750at 396.429 kb on + strandat 396.430 kb on - strandat 396.433 kb on + strandat 396.433 kb on + strandat 396.434 kb on - strandat 396.434 kb on - strandat 396.434 kb on - strandat 396.434 kb on - strandat 396.445 kb on - strandat 396.450 kb on + strandat 396.450 kb on + strandat 396.483 kb on - strandat 396.483 kb on - strandat 396.483 kb on - strandat 396.571 kb on - strandat 396.589 kb on - strandat 396.651 kb on - strand, within AO356_01755at 396.651 kb on - strand, within AO356_01755at 397.152 kb on - strand, within AO356_01755at 397.530 kb on + strand, within AO356_01755at 397.587 kb on - strand, within AO356_01755at 397.587 kb on - strand, within AO356_01755at 397.791 kb on + strandat 397.792 kb on - strandat 397.878 kb on + strandat 397.878 kb on + strandat 397.878 kb on + strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.879 kb on - strandat 397.881 kb on + strandat 397.881 kb on + strandat 397.882 kb on - strandat 397.906 kb on - strandat 397.906 kb on - strandat 397.978 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.016 kb on + strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.017 kb on - strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.018 kb on + strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.019 kb on - strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.020 kb on + strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.021 kb on - strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.022 kb on + strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.023 kb on - strandat 398.078 kb on + strandat 398.078 kb on + strandat 398.197 kb on + strandat 398.220 kb on - strandat 398.233 kb on + strandat 398.233 kb on + strandat 398.233 kb on + strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.234 kb on - strandat 398.355 kb on - strandat 398.355 kb on - strandat 398.372 kb on - strandat 398.473 kb on - strandat 398.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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395,616 + -1.4
395,617 - -1.8
395,617 - -0.8
395,768 + -2.4
395,768 + -1.9
395,769 - -2.2
396,129 - AO356_01750 0.56 -1.5
396,173 + AO356_01750 0.63 -1.0
396,173 + AO356_01750 0.63 -1.9
396,173 + AO356_01750 0.63 -1.8
396,245 + AO356_01750 0.74 +0.2
396,246 - AO356_01750 0.75 -1.2
396,246 - AO356_01750 0.75 -2.3
396,299 + AO356_01750 0.83 -1.9
396,299 + AO356_01750 0.83 -1.9
396,299 + AO356_01750 0.83 -1.6
396,300 - AO356_01750 0.83 -1.2
396,429 + -0.2
396,430 - +0.0
396,433 + -1.6
396,433 + -1.4
396,434 - -1.4
396,434 - -1.4
396,434 - -1.3
396,434 - +0.0
396,445 - -0.5
396,450 + +0.2
396,450 + -1.9
396,483 - -1.6
396,483 - +0.4
396,483 - -2.4
396,571 - -0.8
396,589 - -0.1
396,651 - AO356_01755 0.11 -0.5
396,651 - AO356_01755 0.11 -0.8
397,152 - AO356_01755 0.50 +0.8
397,530 + AO356_01755 0.78 -0.0
397,587 - AO356_01755 0.83 +0.5
397,587 - AO356_01755 0.83 -0.3
397,791 + -0.3
397,792 - -0.3
397,878 + +0.8
397,878 + +0.2
397,878 + -0.4
397,879 - -0.6
397,879 - +1.2
397,879 - -0.1
397,879 - +0.0
397,879 - -0.5
397,881 + -0.5
397,881 + -2.1
397,882 - +0.9
397,906 - +0.9
397,906 - -0.3
397,978 + +1.0
398,016 + +0.2
398,016 + +0.3
398,016 + +0.4
398,016 + +0.7
398,016 + -0.1
398,016 + +0.4
398,016 + +0.3
398,016 + -1.4
398,017 - +0.5
398,017 - -0.0
398,017 - -1.5
398,017 - -0.3
398,017 - +0.0
398,018 + +0.6
398,018 + +0.1
398,018 + +1.0
398,018 + +0.2
398,018 + +0.2
398,018 + -1.3
398,018 + +0.5
398,018 + +1.8
398,019 - -0.0
398,019 - +1.2
398,019 - -0.2
398,019 - +0.3
398,020 + +0.4
398,020 + -2.1
398,020 + +0.3
398,020 + +0.5
398,020 + -1.1
398,021 - -0.2
398,021 - -0.5
398,021 - -0.7
398,021 - -0.5
398,021 - +0.1
398,021 - -0.0
398,021 - +0.2
398,021 - -1.0
398,021 - -1.4
398,021 - -0.2
398,022 + +1.1
398,022 + +1.2
398,022 + +0.8
398,022 + -0.3
398,022 + +0.1
398,022 + -0.4
398,023 - -0.2
398,023 - +0.0
398,023 - +0.1
398,023 - -1.1
398,023 - -0.7
398,023 - +0.8
398,023 - -0.8
398,023 - +0.4
398,023 - +0.2
398,078 + -0.0
398,078 + +0.5
398,197 + -0.1
398,220 - +0.5
398,233 + +0.4
398,233 + -0.2
398,233 + -1.2
398,234 - +0.7
398,234 - +0.4
398,234 - +0.6
398,234 - +0.0
398,234 - -0.3
398,355 - -0.4
398,355 - +0.8
398,372 - -0.1
398,473 - +0.6
398,606 - -1.5

Or see this region's nucleotide sequence