Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34205 and RR42_RS34210 are separated by 220 nucleotides RR42_RS34210 and RR42_RS34215 are separated by 257 nucleotides RR42_RS34215 and RR42_RS34220 are separated by 278 nucleotides
RR42_RS34205: RR42_RS34205 - hypothetical protein, at 3,099,530 to 3,099,880
_RS34205
RR42_RS34210: RR42_RS34210 - hypothetical protein, at 3,100,101 to 3,100,490
_RS34210
RR42_RS34215: RR42_RS34215 - ferredoxin, at 3,100,748 to 3,101,068
_RS34215
RR42_RS34220: RR42_RS34220 - pyruvate dehydrogenase, at 3,101,347 to 3,104,022
_RS34220
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-2
-1
0
1 at 3099.792 kb on - strand, within RR42_RS34205 at 3099.806 kb on + strand, within RR42_RS34205 at 3099.807 kb on - strand, within RR42_RS34205 at 3099.807 kb on - strand, within RR42_RS34205 at 3099.939 kb on + strand at 3100.270 kb on + strand, within RR42_RS34210 at 3100.271 kb on - strand, within RR42_RS34210 at 3100.271 kb on - strand, within RR42_RS34210 at 3100.496 kb on + strand at 3100.537 kb on - strand at 3100.582 kb on + strand at 3100.614 kb on - strand at 3100.730 kb on - strand at 3100.731 kb on + strand at 3100.731 kb on + strand at 3100.731 kb on + strand at 3100.893 kb on + strand, within RR42_RS34215 at 3101.308 kb on + strand at 3101.309 kb on - strand at 3101.547 kb on - strand at 3101.547 kb on - strand at 3101.852 kb on + strand, within RR42_RS34220 at 3101.853 kb on - strand, within RR42_RS34220 at 3101.906 kb on + strand, within RR42_RS34220 at 3101.907 kb on - strand, within RR42_RS34220 at 3101.907 kb on - strand, within RR42_RS34220 at 3101.930 kb on + strand, within RR42_RS34220 at 3101.931 kb on - strand, within RR42_RS34220 at 3101.931 kb on - strand, within RR42_RS34220 at 3101.933 kb on + strand, within RR42_RS34220 at 3101.933 kb on + strand, within RR42_RS34220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 3,099,792 - RR42_RS34205 0.75 -0.2 3,099,806 + RR42_RS34205 0.79 -0.6 3,099,807 - RR42_RS34205 0.79 -0.5 3,099,807 - RR42_RS34205 0.79 -0.4 3,099,939 + -0.8 3,100,270 + RR42_RS34210 0.43 -0.2 3,100,271 - RR42_RS34210 0.44 -0.2 3,100,271 - RR42_RS34210 0.44 -0.7 3,100,496 + +0.5 3,100,537 - +0.4 3,100,582 + -1.9 3,100,614 - +0.4 3,100,730 - +0.6 3,100,731 + -0.3 3,100,731 + +0.0 3,100,731 + +0.6 3,100,893 + RR42_RS34215 0.45 -0.8 3,101,308 + +0.2 3,101,309 - -0.1 3,101,547 - +0.1 3,101,547 - -0.9 3,101,852 + RR42_RS34220 0.19 -0.1 3,101,853 - RR42_RS34220 0.19 -1.5 3,101,906 + RR42_RS34220 0.21 +0.3 3,101,907 - RR42_RS34220 0.21 -1.6 3,101,907 - RR42_RS34220 0.21 +0.2 3,101,930 + RR42_RS34220 0.22 -0.1 3,101,931 - RR42_RS34220 0.22 +0.2 3,101,931 - RR42_RS34220 0.22 -0.5 3,101,933 + RR42_RS34220 0.22 +0.1 3,101,933 + RR42_RS34220 0.22 +0.3
Or see this region's nucleotide sequence