Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26470

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26465 and RR42_RS26470 are separated by 255 nucleotidesRR42_RS26470 and RR42_RS26475 are separated by 23 nucleotidesRR42_RS26475 and RR42_RS26480 are separated by 1 nucleotides RR42_RS26465: RR42_RS26465 - MFS transporter, at 1,293,006 to 1,294,610 _RS26465 RR42_RS26470: RR42_RS26470 - amidohydrolase, at 1,294,866 to 1,295,828 _RS26470 RR42_RS26475: RR42_RS26475 - Asp/Glu racemase, at 1,295,852 to 1,296,604 _RS26475 RR42_RS26480: RR42_RS26480 - alpha/beta hydrolase, at 1,296,606 to 1,297,451 _RS26480 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -2 -1 0 1at 1293.971 kb on - strand, within RR42_RS26465at 1294.066 kb on + strand, within RR42_RS26465at 1294.165 kb on + strand, within RR42_RS26465at 1294.166 kb on - strand, within RR42_RS26465at 1294.166 kb on - strand, within RR42_RS26465at 1294.261 kb on + strand, within RR42_RS26465at 1294.262 kb on - strand, within RR42_RS26465at 1294.486 kb on + strandat 1294.487 kb on - strandat 1294.487 kb on - strandat 1294.493 kb on - strandat 1294.767 kb on - strandat 1294.769 kb on - strandat 1294.927 kb on - strandat 1294.927 kb on - strandat 1295.270 kb on + strand, within RR42_RS26470at 1295.284 kb on - strand, within RR42_RS26470at 1295.286 kb on + strand, within RR42_RS26470at 1295.301 kb on + strand, within RR42_RS26470at 1295.302 kb on - strand, within RR42_RS26470at 1295.346 kb on + strand, within RR42_RS26470at 1295.346 kb on + strand, within RR42_RS26470at 1295.347 kb on - strand, within RR42_RS26470at 1295.347 kb on - strand, within RR42_RS26470at 1295.513 kb on + strand, within RR42_RS26470at 1295.513 kb on + strand, within RR42_RS26470at 1295.607 kb on + strand, within RR42_RS26470at 1295.607 kb on + strand, within RR42_RS26470at 1295.608 kb on - strand, within RR42_RS26470at 1295.621 kb on + strand, within RR42_RS26470at 1295.716 kb on - strand, within RR42_RS26470at 1295.722 kb on - strand, within RR42_RS26470at 1296.157 kb on + strand, within RR42_RS26475at 1296.242 kb on - strand, within RR42_RS26475at 1296.294 kb on - strand, within RR42_RS26475at 1296.294 kb on - strand, within RR42_RS26475at 1296.294 kb on - strand, within RR42_RS26475at 1296.530 kb on + strandat 1296.635 kb on - strandat 1296.660 kb on + strandat 1296.661 kb on - strandat 1296.789 kb on + strand, within RR42_RS26480at 1296.789 kb on + strand, within RR42_RS26480at 1296.789 kb on + strand, within RR42_RS26480at 1296.790 kb on - strand, within RR42_RS26480at 1296.790 kb on - strand, within RR42_RS26480

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,293,971 - RR42_RS26465 0.60 -0.6
1,294,066 + RR42_RS26465 0.66 +0.7
1,294,165 + RR42_RS26465 0.72 -0.4
1,294,166 - RR42_RS26465 0.72 +0.0
1,294,166 - RR42_RS26465 0.72 +1.1
1,294,261 + RR42_RS26465 0.78 -0.8
1,294,262 - RR42_RS26465 0.78 +0.7
1,294,486 + -0.3
1,294,487 - -0.6
1,294,487 - -0.6
1,294,493 - +0.4
1,294,767 - +0.5
1,294,769 - -0.2
1,294,927 - +0.5
1,294,927 - -0.9
1,295,270 + RR42_RS26470 0.42 +0.2
1,295,284 - RR42_RS26470 0.43 +0.3
1,295,286 + RR42_RS26470 0.44 +0.1
1,295,301 + RR42_RS26470 0.45 -0.1
1,295,302 - RR42_RS26470 0.45 -1.7
1,295,346 + RR42_RS26470 0.50 -1.7
1,295,346 + RR42_RS26470 0.50 +0.1
1,295,347 - RR42_RS26470 0.50 +0.3
1,295,347 - RR42_RS26470 0.50 -2.1
1,295,513 + RR42_RS26470 0.67 +0.5
1,295,513 + RR42_RS26470 0.67 +0.1
1,295,607 + RR42_RS26470 0.77 -0.5
1,295,607 + RR42_RS26470 0.77 +0.9
1,295,608 - RR42_RS26470 0.77 -0.5
1,295,621 + RR42_RS26470 0.78 +0.5
1,295,716 - RR42_RS26470 0.88 -0.3
1,295,722 - RR42_RS26470 0.89 +0.7
1,296,157 + RR42_RS26475 0.41 -0.2
1,296,242 - RR42_RS26475 0.52 +0.0
1,296,294 - RR42_RS26475 0.59 +0.3
1,296,294 - RR42_RS26475 0.59 -1.1
1,296,294 - RR42_RS26475 0.59 -0.5
1,296,530 + -0.3
1,296,635 - +1.3
1,296,660 + -0.5
1,296,661 - -0.3
1,296,789 + RR42_RS26480 0.22 +0.5
1,296,789 + RR42_RS26480 0.22 +0.5
1,296,789 + RR42_RS26480 0.22 -0.8
1,296,790 - RR42_RS26480 0.22 -0.4
1,296,790 - RR42_RS26480 0.22 +0.8

Or see this region's nucleotide sequence