Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24330 and RR42_RS24335 are separated by 102 nucleotides RR42_RS24335 and RR42_RS24340 are separated by 255 nucleotides
RR42_RS24330: RR42_RS24330 - IclR family transcriptional regulator, at 786,466 to 787,212
_RS24330
RR42_RS24335: RR42_RS24335 - L-aspartate oxidase, at 787,315 to 788,925
_RS24335
RR42_RS24340: RR42_RS24340 - hypothetical protein, at 789,181 to 790,731
_RS24340
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.318 kb on + strand at 786.349 kb on + strand at 786.350 kb on - strand at 786.356 kb on + strand at 786.357 kb on - strand at 786.365 kb on - strand at 786.384 kb on + strand at 786.387 kb on + strand at 786.387 kb on + strand at 786.472 kb on - strand at 786.563 kb on - strand, within RR42_RS24330 at 786.563 kb on - strand, within RR42_RS24330 at 786.576 kb on + strand, within RR42_RS24330 at 786.584 kb on + strand, within RR42_RS24330 at 786.585 kb on - strand, within RR42_RS24330 at 786.585 kb on - strand, within RR42_RS24330 at 786.587 kb on + strand, within RR42_RS24330 at 786.587 kb on + strand, within RR42_RS24330 at 786.587 kb on + strand, within RR42_RS24330 at 786.608 kb on + strand, within RR42_RS24330 at 786.623 kb on - strand, within RR42_RS24330 at 786.695 kb on + strand, within RR42_RS24330 at 786.696 kb on - strand, within RR42_RS24330 at 786.696 kb on - strand, within RR42_RS24330 at 786.717 kb on + strand, within RR42_RS24330 at 786.718 kb on - strand, within RR42_RS24330 at 786.718 kb on - strand, within RR42_RS24330 at 786.758 kb on + strand, within RR42_RS24330 at 786.759 kb on - strand, within RR42_RS24330 at 786.759 kb on - strand, within RR42_RS24330 at 786.784 kb on + strand, within RR42_RS24330 at 786.785 kb on - strand, within RR42_RS24330 at 786.785 kb on - strand, within RR42_RS24330 at 786.793 kb on + strand, within RR42_RS24330 at 786.794 kb on - strand, within RR42_RS24330 at 786.795 kb on + strand, within RR42_RS24330 at 786.796 kb on - strand, within RR42_RS24330 at 786.796 kb on - strand, within RR42_RS24330 at 786.796 kb on - strand, within RR42_RS24330 at 786.796 kb on - strand, within RR42_RS24330 at 786.796 kb on - strand, within RR42_RS24330 at 786.800 kb on - strand, within RR42_RS24330 at 786.837 kb on + strand, within RR42_RS24330 at 786.838 kb on - strand, within RR42_RS24330 at 786.882 kb on + strand, within RR42_RS24330 at 786.926 kb on + strand, within RR42_RS24330 at 786.926 kb on + strand, within RR42_RS24330 at 786.926 kb on + strand, within RR42_RS24330 at 786.963 kb on + strand, within RR42_RS24330 at 786.964 kb on - strand, within RR42_RS24330 at 787.003 kb on - strand, within RR42_RS24330 at 787.003 kb on - strand, within RR42_RS24330 at 787.022 kb on - strand, within RR42_RS24330 at 787.028 kb on - strand, within RR42_RS24330 at 787.038 kb on + strand, within RR42_RS24330 at 787.038 kb on + strand, within RR42_RS24330 at 787.039 kb on - strand, within RR42_RS24330 at 787.044 kb on + strand, within RR42_RS24330 at 787.044 kb on + strand, within RR42_RS24330 at 787.045 kb on - strand, within RR42_RS24330 at 787.115 kb on + strand, within RR42_RS24330 at 787.115 kb on + strand, within RR42_RS24330 at 787.137 kb on - strand, within RR42_RS24330 at 787.157 kb on - strand at 787.157 kb on - strand at 787.164 kb on + strand at 787.164 kb on + strand at 787.165 kb on - strand at 787.189 kb on + strand at 787.190 kb on - strand at 787.225 kb on + strand at 787.225 kb on + strand at 787.225 kb on + strand at 787.225 kb on + strand at 787.226 kb on - strand at 787.226 kb on - strand at 787.226 kb on - strand at 787.226 kb on - strand at 787.226 kb on - strand at 787.226 kb on - strand at 787.296 kb on - strand at 787.361 kb on + strand at 787.362 kb on - strand at 787.403 kb on - strand at 787.440 kb on + strand at 787.441 kb on - strand at 787.454 kb on - strand at 787.488 kb on + strand, within RR42_RS24335 at 787.505 kb on + strand, within RR42_RS24335 at 787.506 kb on - strand, within RR42_RS24335 at 787.516 kb on - strand, within RR42_RS24335 at 787.578 kb on + strand, within RR42_RS24335 at 787.579 kb on - strand, within RR42_RS24335 at 787.599 kb on + strand, within RR42_RS24335 at 787.600 kb on - strand, within RR42_RS24335 at 787.600 kb on - strand, within RR42_RS24335 at 787.615 kb on + strand, within RR42_RS24335 at 787.701 kb on + strand, within RR42_RS24335 at 787.702 kb on - strand, within RR42_RS24335 at 787.702 kb on - strand, within RR42_RS24335 at 787.762 kb on + strand, within RR42_RS24335 at 787.763 kb on - strand, within RR42_RS24335 at 787.819 kb on + strand, within RR42_RS24335 at 787.826 kb on + strand, within RR42_RS24335 at 787.826 kb on + strand, within RR42_RS24335 at 787.826 kb on + strand, within RR42_RS24335 at 787.826 kb on + strand, within RR42_RS24335 at 787.827 kb on - strand, within RR42_RS24335 at 787.827 kb on - strand, within RR42_RS24335 at 787.883 kb on + strand, within RR42_RS24335 at 787.883 kb on + strand, within RR42_RS24335 at 787.883 kb on + strand, within RR42_RS24335 at 787.884 kb on - strand, within RR42_RS24335 at 788.005 kb on + strand, within RR42_RS24335 at 788.005 kb on + strand, within RR42_RS24335 at 788.015 kb on + strand, within RR42_RS24335 at 788.015 kb on + strand, within RR42_RS24335 at 788.016 kb on - strand, within RR42_RS24335 at 788.016 kb on - strand, within RR42_RS24335 at 788.016 kb on - strand, within RR42_RS24335 at 788.027 kb on + strand, within RR42_RS24335 at 788.027 kb on + strand, within RR42_RS24335 at 788.059 kb on + strand, within RR42_RS24335 at 788.059 kb on + strand, within RR42_RS24335 at 788.059 kb on + strand, within RR42_RS24335 at 788.059 kb on + strand, within RR42_RS24335 at 788.060 kb on - strand, within RR42_RS24335 at 788.096 kb on + strand, within RR42_RS24335 at 788.096 kb on + strand, within RR42_RS24335 at 788.097 kb on - strand, within RR42_RS24335 at 788.170 kb on + strand, within RR42_RS24335 at 788.178 kb on + strand, within RR42_RS24335 at 788.178 kb on + strand, within RR42_RS24335 at 788.178 kb on + strand, within RR42_RS24335 at 788.179 kb on - strand, within RR42_RS24335 at 788.179 kb on - strand, within RR42_RS24335 at 788.196 kb on - strand, within RR42_RS24335 at 788.196 kb on - strand, within RR42_RS24335 at 788.344 kb on - strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.641 kb on + strand, within RR42_RS24335 at 788.642 kb on - strand, within RR42_RS24335 at 788.676 kb on + strand, within RR42_RS24335 at 788.677 kb on - strand, within RR42_RS24335 at 788.678 kb on + strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.733 kb on + strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.809 kb on + strand at 788.833 kb on + strand at 788.833 kb on + strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.841 kb on - strand at 788.955 kb on + strand at 788.975 kb on - strand at 789.032 kb on + strand at 789.032 kb on + strand at 789.052 kb on - strand at 789.106 kb on + strand at 789.186 kb on - strand at 789.186 kb on - strand at 789.265 kb on + strand at 789.266 kb on - strand at 789.275 kb on + strand at 789.275 kb on + strand at 789.315 kb on + strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.381 kb on + strand, within RR42_RS24340 at 789.395 kb on + strand, within RR42_RS24340 at 789.396 kb on - strand, within RR42_RS24340 at 789.543 kb on + strand, within RR42_RS24340 at 789.561 kb on + strand, within RR42_RS24340 at 789.567 kb on + strand, within RR42_RS24340 at 789.584 kb on - strand, within RR42_RS24340 at 789.663 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.666 kb on - strand, within RR42_RS24340 at 789.736 kb on - strand, within RR42_RS24340 at 789.745 kb on + strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.768 kb on + strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.780 kb on - strand, within RR42_RS24340 at 789.855 kb on - strand, within RR42_RS24340 at 789.860 kb on + strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.891 kb on + strand, within RR42_RS24340 at 789.892 kb on - strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.908 kb on - strand, within RR42_RS24340 at 789.915 kb on + strand, within RR42_RS24340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 786,318 + +0.2 786,349 + +1.8 786,350 - +0.4 786,356 + -1.3 786,357 - +0.7 786,365 - -0.4 786,384 + -0.7 786,387 + +0.5 786,387 + -0.7 786,472 - +0.2 786,563 - RR42_RS24330 0.13 -0.7 786,563 - RR42_RS24330 0.13 +0.8 786,576 + RR42_RS24330 0.15 -0.8 786,584 + RR42_RS24330 0.16 -0.2 786,585 - RR42_RS24330 0.16 -0.7 786,585 - RR42_RS24330 0.16 +0.7 786,587 + RR42_RS24330 0.16 +0.7 786,587 + RR42_RS24330 0.16 -0.5 786,587 + RR42_RS24330 0.16 -1.2 786,608 + RR42_RS24330 0.19 +0.0 786,623 - RR42_RS24330 0.21 -0.6 786,695 + RR42_RS24330 0.31 +0.5 786,696 - RR42_RS24330 0.31 -1.0 786,696 - RR42_RS24330 0.31 -0.3 786,717 + RR42_RS24330 0.34 -0.5 786,718 - RR42_RS24330 0.34 +0.4 786,718 - RR42_RS24330 0.34 +1.6 786,758 + RR42_RS24330 0.39 +1.3 786,759 - RR42_RS24330 0.39 +0.8 786,759 - RR42_RS24330 0.39 -0.0 786,784 + RR42_RS24330 0.43 +0.4 786,785 - RR42_RS24330 0.43 +0.4 786,785 - RR42_RS24330 0.43 +0.3 786,793 + RR42_RS24330 0.44 -0.5 786,794 - RR42_RS24330 0.44 -1.7 786,795 + RR42_RS24330 0.44 +0.1 786,796 - RR42_RS24330 0.44 -0.9 786,796 - RR42_RS24330 0.44 +2.1 786,796 - RR42_RS24330 0.44 +0.8 786,796 - RR42_RS24330 0.44 +0.0 786,796 - RR42_RS24330 0.44 -0.2 786,800 - RR42_RS24330 0.45 -1.5 786,837 + RR42_RS24330 0.50 -1.4 786,838 - RR42_RS24330 0.50 -0.2 786,882 + RR42_RS24330 0.56 -0.7 786,926 + RR42_RS24330 0.62 +0.4 786,926 + RR42_RS24330 0.62 +0.7 786,926 + RR42_RS24330 0.62 -2.0 786,963 + RR42_RS24330 0.67 +1.3 786,964 - RR42_RS24330 0.67 +0.6 787,003 - RR42_RS24330 0.72 +1.8 787,003 - RR42_RS24330 0.72 -0.3 787,022 - RR42_RS24330 0.74 -0.0 787,028 - RR42_RS24330 0.75 -0.3 787,038 + RR42_RS24330 0.77 -0.4 787,038 + RR42_RS24330 0.77 -0.2 787,039 - RR42_RS24330 0.77 +0.5 787,044 + RR42_RS24330 0.77 +0.4 787,044 + RR42_RS24330 0.77 -0.1 787,045 - RR42_RS24330 0.78 -0.3 787,115 + RR42_RS24330 0.87 -0.1 787,115 + RR42_RS24330 0.87 -0.5 787,137 - RR42_RS24330 0.90 +0.3 787,157 - +0.3 787,157 - -0.0 787,164 + +0.0 787,164 + -3.6 787,165 - +1.0 787,189 + +0.7 787,190 - +0.3 787,225 + +0.7 787,225 + +1.2 787,225 + -0.8 787,225 + -0.1 787,226 - -0.0 787,226 - -0.3 787,226 - +0.1 787,226 - +0.3 787,226 - -0.0 787,226 - -0.3 787,296 - -0.3 787,361 + +1.4 787,362 - -0.5 787,403 - +0.5 787,440 + -0.1 787,441 - -0.0 787,454 - +0.7 787,488 + RR42_RS24335 0.11 -0.4 787,505 + RR42_RS24335 0.12 +0.5 787,506 - RR42_RS24335 0.12 -0.3 787,516 - RR42_RS24335 0.12 -0.0 787,578 + RR42_RS24335 0.16 -0.4 787,579 - RR42_RS24335 0.16 +1.3 787,599 + RR42_RS24335 0.18 +0.4 787,600 - RR42_RS24335 0.18 +0.3 787,600 - RR42_RS24335 0.18 -0.2 787,615 + RR42_RS24335 0.19 -0.6 787,701 + RR42_RS24335 0.24 +0.1 787,702 - RR42_RS24335 0.24 -0.3 787,702 - RR42_RS24335 0.24 +0.6 787,762 + RR42_RS24335 0.28 -0.9 787,763 - RR42_RS24335 0.28 +0.6 787,819 + RR42_RS24335 0.31 -0.5 787,826 + RR42_RS24335 0.32 +0.1 787,826 + RR42_RS24335 0.32 -0.4 787,826 + RR42_RS24335 0.32 +0.8 787,826 + RR42_RS24335 0.32 +0.5 787,827 - RR42_RS24335 0.32 -2.2 787,827 - RR42_RS24335 0.32 +1.0 787,883 + RR42_RS24335 0.35 +0.1 787,883 + RR42_RS24335 0.35 +0.8 787,883 + RR42_RS24335 0.35 +1.6 787,884 - RR42_RS24335 0.35 +0.9 788,005 + RR42_RS24335 0.43 -0.3 788,005 + RR42_RS24335 0.43 -0.6 788,015 + RR42_RS24335 0.43 -0.5 788,015 + RR42_RS24335 0.43 +0.5 788,016 - RR42_RS24335 0.44 -2.2 788,016 - RR42_RS24335 0.44 -0.7 788,016 - RR42_RS24335 0.44 +0.7 788,027 + RR42_RS24335 0.44 +0.4 788,027 + RR42_RS24335 0.44 +1.8 788,059 + RR42_RS24335 0.46 +0.1 788,059 + RR42_RS24335 0.46 +0.1 788,059 + RR42_RS24335 0.46 -1.7 788,059 + RR42_RS24335 0.46 -0.2 788,060 - RR42_RS24335 0.46 -2.6 788,096 + RR42_RS24335 0.48 -0.7 788,096 + RR42_RS24335 0.48 -0.4 788,097 - RR42_RS24335 0.49 -0.2 788,170 + RR42_RS24335 0.53 +0.5 788,178 + RR42_RS24335 0.54 +0.6 788,178 + RR42_RS24335 0.54 -0.8 788,178 + RR42_RS24335 0.54 +0.4 788,179 - RR42_RS24335 0.54 +0.3 788,179 - RR42_RS24335 0.54 +1.3 788,196 - RR42_RS24335 0.55 +0.5 788,196 - RR42_RS24335 0.55 +0.5 788,344 - RR42_RS24335 0.64 +0.1 788,409 + RR42_RS24335 0.68 +0.3 788,409 + RR42_RS24335 0.68 -0.7 788,410 - RR42_RS24335 0.68 +0.5 788,410 - RR42_RS24335 0.68 -0.4 788,449 + RR42_RS24335 0.70 +0.3 788,449 + RR42_RS24335 0.70 -0.4 788,450 - RR42_RS24335 0.70 +0.5 788,450 - RR42_RS24335 0.70 -0.0 788,450 - RR42_RS24335 0.70 -0.1 788,590 + RR42_RS24335 0.79 +0.1 788,590 + RR42_RS24335 0.79 -0.6 788,590 + RR42_RS24335 0.79 -0.4 788,591 - RR42_RS24335 0.79 -0.7 788,591 - RR42_RS24335 0.79 -0.5 788,641 + RR42_RS24335 0.82 -0.5 788,642 - RR42_RS24335 0.82 +1.3 788,676 + RR42_RS24335 0.84 +0.1 788,677 - RR42_RS24335 0.85 -0.4 788,678 + RR42_RS24335 0.85 +0.4 788,679 - RR42_RS24335 0.85 -0.5 788,679 - RR42_RS24335 0.85 +0.2 788,679 - RR42_RS24335 0.85 +2.2 788,679 - RR42_RS24335 0.85 +2.3 788,733 + RR42_RS24335 0.88 +0.6 788,734 - RR42_RS24335 0.88 -0.5 788,734 - RR42_RS24335 0.88 -1.1 788,809 + +0.4 788,833 + -1.2 788,833 + +1.8 788,834 - +0.3 788,834 - +0.6 788,834 - -0.4 788,834 - -0.9 788,841 - +0.8 788,955 + +0.6 788,975 - +0.6 789,032 + +0.2 789,032 + +0.1 789,052 - +0.6 789,106 + +0.4 789,186 - -1.5 789,186 - +0.2 789,265 + -2.0 789,266 - -0.2 789,275 + -0.3 789,275 + -0.1 789,315 + -0.2 789,316 - -0.7 789,316 - -0.1 789,316 - +0.1 789,316 - -0.2 789,377 + RR42_RS24340 0.13 -0.1 789,377 + RR42_RS24340 0.13 +0.3 789,377 + RR42_RS24340 0.13 -0.2 789,377 + RR42_RS24340 0.13 +0.7 789,378 - RR42_RS24340 0.13 +0.2 789,378 - RR42_RS24340 0.13 -1.0 789,378 - RR42_RS24340 0.13 -0.7 789,378 - RR42_RS24340 0.13 +1.0 789,381 + RR42_RS24340 0.13 +2.4 789,395 + RR42_RS24340 0.14 -2.1 789,396 - RR42_RS24340 0.14 +0.7 789,543 + RR42_RS24340 0.23 -0.3 789,561 + RR42_RS24340 0.25 +0.4 789,567 + RR42_RS24340 0.25 -0.4 789,584 - RR42_RS24340 0.26 -0.2 789,663 + RR42_RS24340 0.31 +0.1 789,665 + RR42_RS24340 0.31 +1.0 789,665 + RR42_RS24340 0.31 +0.4 789,666 - RR42_RS24340 0.31 +0.8 789,736 - RR42_RS24340 0.36 -0.2 789,745 + RR42_RS24340 0.36 +0.2 789,746 - RR42_RS24340 0.36 -1.5 789,746 - RR42_RS24340 0.36 +0.0 789,758 + RR42_RS24340 0.37 +1.7 789,758 + RR42_RS24340 0.37 +0.8 789,759 - RR42_RS24340 0.37 -0.1 789,759 - RR42_RS24340 0.37 +0.4 789,759 - RR42_RS24340 0.37 -0.1 789,759 - RR42_RS24340 0.37 +1.1 789,768 + RR42_RS24340 0.38 +0.3 789,769 - RR42_RS24340 0.38 +1.7 789,769 - RR42_RS24340 0.38 +0.4 789,779 + RR42_RS24340 0.39 +0.4 789,779 + RR42_RS24340 0.39 +0.8 789,780 - RR42_RS24340 0.39 +0.0 789,855 - RR42_RS24340 0.43 -0.1 789,860 + RR42_RS24340 0.44 -0.5 789,861 - RR42_RS24340 0.44 -0.1 789,861 - RR42_RS24340 0.44 -0.3 789,861 - RR42_RS24340 0.44 -0.2 789,891 + RR42_RS24340 0.46 +0.6 789,892 - RR42_RS24340 0.46 -2.1 789,907 + RR42_RS24340 0.47 +0.8 789,907 + RR42_RS24340 0.47 -0.4 789,908 - RR42_RS24340 0.47 +0.0 789,915 + RR42_RS24340 0.47 +0.9
Or see this region's nucleotide sequence