Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22240 and RR42_RS22245 are separated by 364 nucleotides RR42_RS22245 and RR42_RS22250 are separated by 25 nucleotides RR42_RS22250 and RR42_RS22255 are separated by 23 nucleotides
RR42_RS22240: RR42_RS22240 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 327,707 to 329,008
_RS22240
RR42_RS22245: RR42_RS22245 - cytochrome C biogenesis protein, at 329,373 to 330,320
_RS22245
RR42_RS22250: RR42_RS22250 - hypothetical protein, at 330,346 to 330,642
_RS22250
RR42_RS22255: RR42_RS22255 - hypothetical protein, at 330,666 to 332,096
_RS22255
Position (kb)
329
330
331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 328.724 kb on + strand, within RR42_RS22240 at 328.850 kb on + strand, within RR42_RS22240 at 329.007 kb on - strand at 329.024 kb on + strand at 329.176 kb on + strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.197 kb on - strand at 329.228 kb on + strand at 329.228 kb on + strand at 329.295 kb on + strand at 329.295 kb on + strand at 329.296 kb on - strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.298 kb on - strand at 329.298 kb on - strand at 329.301 kb on + strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.379 kb on + strand at 329.380 kb on - strand at 329.391 kb on + strand at 329.392 kb on - strand at 329.466 kb on + strand at 329.467 kb on - strand at 329.467 kb on - strand at 329.529 kb on + strand, within RR42_RS22245 at 329.530 kb on - strand, within RR42_RS22245 at 329.587 kb on - strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.983 kb on - strand, within RR42_RS22245 at 330.284 kb on + strand at 330.284 kb on + strand at 330.341 kb on + strand at 330.342 kb on - strand at 330.609 kb on - strand, within RR42_RS22250 at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.947 kb on - strand, within RR42_RS22255
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 328,724 + RR42_RS22240 0.78 +0.1 328,850 + RR42_RS22240 0.88 +0.0 329,007 - +1.8 329,024 + -0.3 329,176 + +1.8 329,177 - -1.0 329,177 - -1.0 329,177 - -1.7 329,177 - +0.7 329,197 - +2.0 329,228 + +1.2 329,228 + -0.1 329,295 + -1.3 329,295 + +0.1 329,296 - +0.8 329,297 + -1.8 329,297 + -0.0 329,297 + -0.3 329,297 + +0.4 329,298 - +0.2 329,298 - +0.4 329,301 + +1.0 329,302 - +0.4 329,302 - -0.3 329,302 - +0.0 329,379 + +1.0 329,380 - +0.0 329,391 + +1.3 329,392 - +0.0 329,466 + -0.5 329,467 - -0.3 329,467 - +0.5 329,529 + RR42_RS22245 0.16 -0.9 329,530 - RR42_RS22245 0.17 +0.6 329,587 - RR42_RS22245 0.23 +0.2 329,640 + RR42_RS22245 0.28 -0.6 329,640 + RR42_RS22245 0.28 +0.2 329,834 + RR42_RS22245 0.49 +0.7 329,834 + RR42_RS22245 0.49 +1.1 329,983 - RR42_RS22245 0.64 +0.6 330,284 + +0.2 330,284 + +2.0 330,341 + -0.7 330,342 - +1.2 330,609 - RR42_RS22250 0.89 +0.3 330,718 + -0.1 330,718 + +0.1 330,718 + +0.7 330,718 + +0.5 330,719 - +0.3 330,719 - -0.3 330,719 - +0.1 330,947 - RR42_RS22255 0.20 -0.0
Or see this region's nucleotide sequence