Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14655

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14650 and RR42_RS14655 are separated by 875 nucleotidesRR42_RS14655 and RR42_RS14660 are separated by 89 nucleotidesRR42_RS14660 and RR42_RS14665 are separated by 103 nucleotides RR42_RS14650: RR42_RS14650 - multidrug ABC transporter ATP-binding protein, at 3,152,896 to 3,154,728 _RS14650 RR42_RS14655: RR42_RS14655 - chromate transporter, at 3,155,604 to 3,156,134 _RS14655 RR42_RS14660: RR42_RS14660 - chromate transporter, at 3,156,224 to 3,156,802 _RS14660 RR42_RS14665: RR42_RS14665 - DNA topoisomerase IV subunit A, at 3,156,906 to 3,159,257 _RS14665 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -2 -1 0 1 2at 3154.679 kb on - strandat 3154.679 kb on - strandat 3154.787 kb on + strandat 3154.827 kb on + strandat 3154.827 kb on + strandat 3154.848 kb on - strandat 3155.205 kb on + strandat 3155.515 kb on + strandat 3155.515 kb on + strandat 3155.515 kb on + strandat 3155.522 kb on + strandat 3155.522 kb on + strandat 3155.522 kb on + strandat 3155.523 kb on - strandat 3155.566 kb on + strandat 3155.566 kb on + strandat 3155.839 kb on + strand, within RR42_RS14655at 3155.840 kb on - strand, within RR42_RS14655at 3155.840 kb on - strand, within RR42_RS14655at 3155.980 kb on + strand, within RR42_RS14655at 3155.980 kb on + strand, within RR42_RS14655at 3155.980 kb on + strand, within RR42_RS14655at 3155.980 kb on + strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3155.981 kb on - strand, within RR42_RS14655at 3156.153 kb on - strandat 3156.222 kb on - strandat 3156.222 kb on - strandat 3156.454 kb on - strand, within RR42_RS14660at 3156.462 kb on + strand, within RR42_RS14660at 3156.463 kb on - strand, within RR42_RS14660at 3156.756 kb on - strandat 3156.794 kb on - strandat 3156.809 kb on + strandat 3156.907 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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3,154,679 - -0.1
3,154,679 - +0.1
3,154,787 + -0.1
3,154,827 + +0.1
3,154,827 + -0.1
3,154,848 - +0.1
3,155,205 + -0.9
3,155,515 + -0.8
3,155,515 + -0.1
3,155,515 + -1.0
3,155,522 + -0.4
3,155,522 + -0.4
3,155,522 + -0.6
3,155,523 - -0.4
3,155,566 + +0.5
3,155,566 + +1.1
3,155,839 + RR42_RS14655 0.44 -0.5
3,155,840 - RR42_RS14655 0.44 +1.9
3,155,840 - RR42_RS14655 0.44 -0.1
3,155,980 + RR42_RS14655 0.71 +1.4
3,155,980 + RR42_RS14655 0.71 -1.2
3,155,980 + RR42_RS14655 0.71 +0.9
3,155,980 + RR42_RS14655 0.71 +1.1
3,155,981 - RR42_RS14655 0.71 -0.2
3,155,981 - RR42_RS14655 0.71 +0.4
3,155,981 - RR42_RS14655 0.71 -0.3
3,155,981 - RR42_RS14655 0.71 -0.8
3,155,981 - RR42_RS14655 0.71 -0.2
3,155,981 - RR42_RS14655 0.71 +0.5
3,155,981 - RR42_RS14655 0.71 +0.5
3,156,153 - -0.4
3,156,222 - -0.0
3,156,222 - +0.9
3,156,454 - RR42_RS14660 0.40 +0.8
3,156,462 + RR42_RS14660 0.41 +0.9
3,156,463 - RR42_RS14660 0.41 -0.4
3,156,756 - -0.6
3,156,794 - -0.5
3,156,809 + -0.1
3,156,907 + -2.6

Or see this region's nucleotide sequence