Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08405

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08395 and RR42_RS08400 are separated by 50 nucleotidesRR42_RS08400 and RR42_RS08405 overlap by 8 nucleotidesRR42_RS08405 and RR42_RS08410 are separated by 79 nucleotidesRR42_RS08410 and RR42_RS08415 overlap by 14 nucleotides RR42_RS08395: RR42_RS08395 - hypothetical protein, at 1,774,387 to 1,775,301 _RS08395 RR42_RS08400: RR42_RS08400 - hypothetical protein, at 1,775,352 to 1,775,750 _RS08400 RR42_RS08405: RR42_RS08405 - chitinase, at 1,775,743 to 1,776,288 _RS08405 RR42_RS08410: RR42_RS08410 - hypothetical protein, at 1,776,368 to 1,776,859 _RS08410 RR42_RS08415: RR42_RS08415 - hypothetical protein, at 1,776,846 to 1,777,271 _RS08415 Position (kb) 1775 1776 1777Strain fitness (log2 ratio) -2 -1 0 1 2at 1774.781 kb on + strand, within RR42_RS08395at 1774.781 kb on + strand, within RR42_RS08395at 1774.882 kb on - strand, within RR42_RS08395at 1774.897 kb on + strand, within RR42_RS08395at 1774.898 kb on - strand, within RR42_RS08395at 1774.898 kb on - strand, within RR42_RS08395at 1774.901 kb on + strand, within RR42_RS08395at 1774.901 kb on + strand, within RR42_RS08395at 1774.902 kb on - strand, within RR42_RS08395at 1774.947 kb on - strand, within RR42_RS08395at 1774.947 kb on - strand, within RR42_RS08395at 1774.959 kb on + strand, within RR42_RS08395at 1774.962 kb on + strand, within RR42_RS08395at 1774.963 kb on - strand, within RR42_RS08395at 1774.963 kb on - strand, within RR42_RS08395at 1775.002 kb on + strand, within RR42_RS08395at 1775.002 kb on + strand, within RR42_RS08395at 1775.003 kb on - strand, within RR42_RS08395at 1775.023 kb on - strand, within RR42_RS08395at 1775.023 kb on - strand, within RR42_RS08395at 1775.054 kb on + strand, within RR42_RS08395at 1775.054 kb on + strand, within RR42_RS08395at 1775.059 kb on - strand, within RR42_RS08395at 1775.194 kb on + strand, within RR42_RS08395at 1775.195 kb on - strand, within RR42_RS08395at 1775.195 kb on - strand, within RR42_RS08395at 1775.249 kb on - strandat 1775.249 kb on - strandat 1775.300 kb on - strandat 1775.401 kb on + strand, within RR42_RS08400at 1775.481 kb on - strand, within RR42_RS08400at 1775.481 kb on - strand, within RR42_RS08400at 1775.560 kb on - strand, within RR42_RS08400at 1776.055 kb on + strand, within RR42_RS08405at 1776.056 kb on - strand, within RR42_RS08405at 1776.056 kb on - strand, within RR42_RS08405at 1776.149 kb on - strand, within RR42_RS08405at 1776.286 kb on + strandat 1776.686 kb on + strand, within RR42_RS08410at 1776.687 kb on - strand, within RR42_RS08410at 1776.687 kb on - strand, within RR42_RS08410at 1776.800 kb on + strand, within RR42_RS08410at 1776.800 kb on + strand, within RR42_RS08410at 1776.801 kb on - strand, within RR42_RS08410at 1776.963 kb on + strand, within RR42_RS08415at 1777.116 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.164 kb on + strand, within RR42_RS08415at 1777.165 kb on - strand, within RR42_RS08415at 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.267 kb on + strandat 1777.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,774,781 + RR42_RS08395 0.43 -0.6
1,774,781 + RR42_RS08395 0.43 +0.2
1,774,882 - RR42_RS08395 0.54 -0.0
1,774,897 + RR42_RS08395 0.56 -0.2
1,774,898 - RR42_RS08395 0.56 +0.2
1,774,898 - RR42_RS08395 0.56 -0.6
1,774,901 + RR42_RS08395 0.56 -1.8
1,774,901 + RR42_RS08395 0.56 -0.5
1,774,902 - RR42_RS08395 0.56 +1.0
1,774,947 - RR42_RS08395 0.61 -1.8
1,774,947 - RR42_RS08395 0.61 +0.3
1,774,959 + RR42_RS08395 0.63 -0.2
1,774,962 + RR42_RS08395 0.63 -0.3
1,774,963 - RR42_RS08395 0.63 -0.8
1,774,963 - RR42_RS08395 0.63 -0.0
1,775,002 + RR42_RS08395 0.67 -0.3
1,775,002 + RR42_RS08395 0.67 -0.9
1,775,003 - RR42_RS08395 0.67 +0.2
1,775,023 - RR42_RS08395 0.70 -0.5
1,775,023 - RR42_RS08395 0.70 +1.2
1,775,054 + RR42_RS08395 0.73 -1.2
1,775,054 + RR42_RS08395 0.73 -0.3
1,775,059 - RR42_RS08395 0.73 -0.8
1,775,194 + RR42_RS08395 0.88 -0.3
1,775,195 - RR42_RS08395 0.88 -0.1
1,775,195 - RR42_RS08395 0.88 -0.2
1,775,249 - -0.5
1,775,249 - +0.9
1,775,300 - -0.3
1,775,401 + RR42_RS08400 0.12 -0.3
1,775,481 - RR42_RS08400 0.32 +0.2
1,775,481 - RR42_RS08400 0.32 +0.2
1,775,560 - RR42_RS08400 0.52 -0.1
1,776,055 + RR42_RS08405 0.57 -0.5
1,776,056 - RR42_RS08405 0.57 -0.1
1,776,056 - RR42_RS08405 0.57 -0.5
1,776,149 - RR42_RS08405 0.74 -2.3
1,776,286 + +0.9
1,776,686 + RR42_RS08410 0.65 +0.2
1,776,687 - RR42_RS08410 0.65 +0.5
1,776,687 - RR42_RS08410 0.65 +0.5
1,776,800 + RR42_RS08410 0.88 -0.2
1,776,800 + RR42_RS08410 0.88 -0.5
1,776,801 - RR42_RS08410 0.88 +0.1
1,776,963 + RR42_RS08415 0.27 -0.8
1,777,116 + RR42_RS08415 0.63 +0.0
1,777,164 + RR42_RS08415 0.75 -0.1
1,777,164 + RR42_RS08415 0.75 -0.2
1,777,164 + RR42_RS08415 0.75 +1.1
1,777,165 - RR42_RS08415 0.75 -0.5
1,777,267 + -0.9
1,777,267 + +2.2
1,777,267 + +0.2
1,777,267 + -0.4
1,777,268 - +1.7

Or see this region's nucleotide sequence