Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07680 and RR42_RS07685 are separated by 32 nucleotides RR42_RS07685 and RR42_RS07690 are separated by 140 nucleotides
RR42_RS07680: RR42_RS07680 - ABC transporter substrate-binding protein, at 1,646,317 to 1,647,324
_RS07680
RR42_RS07685: RR42_RS07685 - amidohydrolase, at 1,647,357 to 1,648,547
_RS07685
RR42_RS07690: RR42_RS07690 - LysR family transcriptional regulator, at 1,648,688 to 1,649,596
_RS07690
Position (kb) 1647
1648
1649 Strain fitness (log2 ratio) -1
0
1 at 1646.372 kb on + strand at 1646.373 kb on - strand at 1646.373 kb on - strand at 1646.373 kb on - strand at 1646.497 kb on + strand, within RR42_RS07680 at 1646.599 kb on - strand, within RR42_RS07680 at 1646.813 kb on + strand, within RR42_RS07680 at 1646.813 kb on + strand, within RR42_RS07680 at 1646.814 kb on - strand, within RR42_RS07680 at 1646.814 kb on - strand, within RR42_RS07680 at 1646.840 kb on + strand, within RR42_RS07680 at 1646.840 kb on + strand, within RR42_RS07680 at 1646.978 kb on + strand, within RR42_RS07680 at 1647.119 kb on - strand, within RR42_RS07680 at 1647.119 kb on - strand, within RR42_RS07680 at 1647.172 kb on - strand, within RR42_RS07680 at 1647.172 kb on - strand, within RR42_RS07680 at 1647.290 kb on + strand at 1647.290 kb on + strand at 1647.291 kb on - strand at 1647.431 kb on - strand at 1647.431 kb on - strand at 1647.490 kb on + strand, within RR42_RS07685 at 1647.491 kb on - strand, within RR42_RS07685 at 1647.638 kb on - strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.722 kb on - strand, within RR42_RS07685 at 1647.722 kb on - strand, within RR42_RS07685 at 1647.790 kb on + strand, within RR42_RS07685 at 1647.791 kb on - strand, within RR42_RS07685 at 1647.791 kb on - strand, within RR42_RS07685 at 1648.045 kb on + strand, within RR42_RS07685 at 1648.046 kb on - strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.253 kb on - strand, within RR42_RS07685 at 1648.253 kb on - strand, within RR42_RS07685 at 1648.381 kb on + strand, within RR42_RS07685 at 1648.381 kb on + strand, within RR42_RS07685 at 1648.580 kb on - strand at 1649.174 kb on + strand, within RR42_RS07690
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,646,372 + -0.4 1,646,373 - +0.3 1,646,373 - -0.3 1,646,373 - +0.3 1,646,497 + RR42_RS07680 0.18 -0.4 1,646,599 - RR42_RS07680 0.28 -0.5 1,646,813 + RR42_RS07680 0.49 -0.7 1,646,813 + RR42_RS07680 0.49 -0.4 1,646,814 - RR42_RS07680 0.49 -1.1 1,646,814 - RR42_RS07680 0.49 -0.5 1,646,840 + RR42_RS07680 0.52 +0.4 1,646,840 + RR42_RS07680 0.52 -0.9 1,646,978 + RR42_RS07680 0.66 +0.5 1,647,119 - RR42_RS07680 0.80 +1.4 1,647,119 - RR42_RS07680 0.80 -0.2 1,647,172 - RR42_RS07680 0.85 -0.1 1,647,172 - RR42_RS07680 0.85 +0.1 1,647,290 + -0.7 1,647,290 + -0.1 1,647,291 - +0.6 1,647,431 - -0.6 1,647,431 - -0.4 1,647,490 + RR42_RS07685 0.11 +0.3 1,647,491 - RR42_RS07685 0.11 +1.3 1,647,638 - RR42_RS07685 0.24 -0.1 1,647,721 + RR42_RS07685 0.31 +0.5 1,647,721 + RR42_RS07685 0.31 -0.3 1,647,721 + RR42_RS07685 0.31 -1.1 1,647,721 + RR42_RS07685 0.31 +0.1 1,647,722 - RR42_RS07685 0.31 -1.2 1,647,722 - RR42_RS07685 0.31 +0.2 1,647,790 + RR42_RS07685 0.36 -0.2 1,647,791 - RR42_RS07685 0.36 +0.3 1,647,791 - RR42_RS07685 0.36 +1.3 1,648,045 + RR42_RS07685 0.58 -0.1 1,648,046 - RR42_RS07685 0.58 +0.6 1,648,252 + RR42_RS07685 0.75 -0.5 1,648,252 + RR42_RS07685 0.75 -0.4 1,648,252 + RR42_RS07685 0.75 +0.6 1,648,253 - RR42_RS07685 0.75 +0.2 1,648,253 - RR42_RS07685 0.75 -1.1 1,648,381 + RR42_RS07685 0.86 +0.2 1,648,381 + RR42_RS07685 0.86 -1.2 1,648,580 - -0.4 1,649,174 + RR42_RS07690 0.53 -0.6
Or see this region's nucleotide sequence