Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06175

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06165 and RR42_RS06170 are separated by 90 nucleotidesRR42_RS06170 and RR42_RS06175 are separated by 113 nucleotidesRR42_RS06175 and RR42_RS06180 are separated by 83 nucleotidesRR42_RS06180 and RR42_RS06185 are separated by 123 nucleotides RR42_RS06165: RR42_RS06165 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,355,211 to 1,356,083 _RS06165 RR42_RS06170: RR42_RS06170 - hypothetical protein, at 1,356,174 to 1,356,464 _RS06170 RR42_RS06175: RR42_RS06175 - enolase, at 1,356,578 to 1,357,867 _RS06175 RR42_RS06180: RR42_RS06180 - cell division protein FtsB, at 1,357,951 to 1,358,289 _RS06180 RR42_RS06185: RR42_RS06185 - hypothetical protein, at 1,358,413 to 1,358,814 _RS06185 Position (kb) 1356 1357 1358Strain fitness (log2 ratio) -1 0 1 2at 1356.138 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strandat 1356.186 kb on + strandat 1356.187 kb on - strandat 1356.187 kb on - strandat 1356.187 kb on - strandat 1356.189 kb on - strandat 1356.234 kb on + strand, within RR42_RS06170at 1356.280 kb on + strand, within RR42_RS06170at 1356.280 kb on + strand, within RR42_RS06170at 1356.360 kb on + strand, within RR42_RS06170at 1356.360 kb on + strand, within RR42_RS06170at 1356.528 kb on + strandat 1356.531 kb on + strandat 1356.531 kb on + strandat 1357.853 kb on + strandat 1357.854 kb on - strandat 1358.287 kb on + strandat 1358.287 kb on + strandat 1358.405 kb on - strandat 1358.414 kb on + strandat 1358.414 kb on + strandat 1358.414 kb on + strandat 1358.424 kb on - strandat 1358.514 kb on - strand, within RR42_RS06185at 1358.526 kb on + strand, within RR42_RS06185at 1358.527 kb on - strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.543 kb on + strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.544 kb on - strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.546 kb on + strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.547 kb on - strand, within RR42_RS06185at 1358.614 kb on + strand, within RR42_RS06185at 1358.615 kb on - strand, within RR42_RS06185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,356,138 + -0.7
1,356,152 + +0.3
1,356,152 + +0.8
1,356,152 + -0.5
1,356,186 + -1.2
1,356,187 - +1.8
1,356,187 - -0.3
1,356,187 - +0.0
1,356,189 - +0.2
1,356,234 + RR42_RS06170 0.21 +0.5
1,356,280 + RR42_RS06170 0.36 -0.2
1,356,280 + RR42_RS06170 0.36 -0.2
1,356,360 + RR42_RS06170 0.64 -0.8
1,356,360 + RR42_RS06170 0.64 +0.0
1,356,528 + +0.6
1,356,531 + -0.2
1,356,531 + +0.3
1,357,853 + +0.6
1,357,854 - -0.8
1,358,287 + +0.6
1,358,287 + +0.2
1,358,405 - +0.4
1,358,414 + +0.3
1,358,414 + -0.1
1,358,414 + +0.2
1,358,424 - +0.2
1,358,514 - RR42_RS06185 0.25 -0.1
1,358,526 + RR42_RS06185 0.28 -0.2
1,358,527 - RR42_RS06185 0.28 +0.1
1,358,543 + RR42_RS06185 0.32 +0.3
1,358,543 + RR42_RS06185 0.32 +0.4
1,358,543 + RR42_RS06185 0.32 -0.1
1,358,543 + RR42_RS06185 0.32 -0.2
1,358,543 + RR42_RS06185 0.32 +0.0
1,358,544 - RR42_RS06185 0.33 +0.4
1,358,544 - RR42_RS06185 0.33 -1.0
1,358,544 - RR42_RS06185 0.33 +0.7
1,358,544 - RR42_RS06185 0.33 +0.3
1,358,544 - RR42_RS06185 0.33 -0.1
1,358,544 - RR42_RS06185 0.33 +0.6
1,358,546 + RR42_RS06185 0.33 +0.3
1,358,546 + RR42_RS06185 0.33 +1.3
1,358,546 + RR42_RS06185 0.33 -0.2
1,358,547 - RR42_RS06185 0.33 +0.5
1,358,547 - RR42_RS06185 0.33 -1.0
1,358,547 - RR42_RS06185 0.33 -0.0
1,358,547 - RR42_RS06185 0.33 -1.2
1,358,547 - RR42_RS06185 0.33 -0.0
1,358,547 - RR42_RS06185 0.33 +0.4
1,358,547 - RR42_RS06185 0.33 -0.4
1,358,614 + RR42_RS06185 0.50 +0.2
1,358,615 - RR42_RS06185 0.50 +0.3

Or see this region's nucleotide sequence